Literature DB >> 26596591

Structure Formation of Toluene around C60: Implementation of the Adaptive Resolution Scheme (AdResS) into GROMACS.

Sebastian Fritsch1, Christoph Junghans1, Kurt Kremer1.   

Abstract

For the example of C60 solutes in toluene, we present the implementation of the adaptive resolutions scheme (AdResS) for molecular simulations into GROMACS. In AdResS a local, typically all-atom cavity is coupled to a surrounding of coarse-grained, simplified molecules. This methodology can not only be used to reduce the CPU time demand of atomistic simulations but also to systematically investigate the relative influence of different interactions on structure formation. For this, we vary the thickness of the all atom layer of toluene around the C60 and analyze the first toluene layers in comparison to a full bulk simulation.

Entities:  

Year:  2012        PMID: 26596591     DOI: 10.1021/ct200706f

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  2 in total

1.  Relative Entropy and Optimization-Driven Coarse-Graining Methods in VOTCA.

Authors:  S Y Mashayak; Mara N Jochum; Konstantin Koschke; N R Aluru; Victor Rühle; Christoph Junghans
Journal:  PLoS One       Date:  2015-07-20       Impact factor: 3.240

2.  HBP Builder: A Tool to Generate Hyperbranched Polymers and Hyperbranched Multi-Arm Copolymers for Coarse-grained and Fully Atomistic Molecular Simulations.

Authors:  Chunyang Yu; Li Ma; Shanlong Li; Haina Tan; Yongfeng Zhou; Deyue Yan
Journal:  Sci Rep       Date:  2016-05-18       Impact factor: 4.379

  2 in total

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