Literature DB >> 26596442

Accurate Intermolecular Potentials with Physically Grounded Electrostatics.

Maxim Tafipolsky1, Bernd Engels1.   

Abstract

A strategy is proposed to include the missing charge penetration energy term directly into a force field using a sum over pairwise electrostatic energies between spherical atoms as originally suggested by Spackman. This important contribution to the intermolecular potential can be further refined to reproduce the accurate electrostatic energy between monomers in a dimer by allowing for the radial contraction-expansion of atomic charge densities. The other components of a force field (exchange-repulsion and dispersion) are parametrized to reproduce the accurate data calculated by symmetry-adapted perturbation theory (SAPT). As a proof-of-concept, we have derived the force field parameters suitable for modeling intermolecular interactions between polycyclic aromatic hydrocarbons (PAH). It is shown that it is possible to have a balanced force field suitable for molecular simulations of large molecules avoiding error cancellation to a large extent.

Entities:  

Year:  2011        PMID: 26596442     DOI: 10.1021/ct200185h

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  14 in total

1.  AMOEBA+ Classical Potential for Modeling Molecular Interactions.

Authors:  Chengwen Liu; Jean-Philip Piquemal; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2019-06-11       Impact factor: 6.006

Review 2.  Classical electrostatics for biomolecular simulations.

Authors:  G Andrés Cisneros; Mikko Karttunen; Pengyu Ren; Celeste Sagui
Journal:  Chem Rev       Date:  2013-08-27       Impact factor: 60.622

3.  Universal short-range ab initio atom-atom potentials for interaction energy contributions with an optimal repulsion functional form.

Authors:  Jan K Konieczny; W Andrzej Sokalski
Journal:  J Mol Model       Date:  2015-07-14       Impact factor: 1.810

Review 4.  Biomolecular electrostatics and solvation: a computational perspective.

Authors:  Pengyu Ren; Jaehun Chun; Dennis G Thomas; Michael J Schnieders; Marcelo Marucho; Jiajing Zhang; Nathan A Baker
Journal:  Q Rev Biophys       Date:  2012-11       Impact factor: 5.318

5.  Improved parameterization of interatomic potentials for rare gas dimers with density-based energy decomposition analysis.

Authors:  Nengjie Zhou; Zhenyu Lu; Qin Wu; Yingkai Zhang
Journal:  J Chem Phys       Date:  2014-06-07       Impact factor: 3.488

6.  Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model.

Authors:  Marie L Laury; Lee-Ping Wang; Vijay S Pande; Teresa Head-Gordon; Jay W Ponder
Journal:  J Phys Chem B       Date:  2015-02-26       Impact factor: 2.991

7.  An optimized charge penetration model for use with the AMOEBA force field.

Authors:  Joshua A Rackers; Qiantao Wang; Chengwen Liu; Jean-Philip Piquemal; Pengyu Ren; Jay W Ponder
Journal:  Phys Chem Chem Phys       Date:  2016-12-21       Impact factor: 3.676

8.  General van der Waals potential for common organic molecules.

Authors:  Rui Qi; Qiantao Wang; Pengyu Ren
Journal:  Bioorg Med Chem       Date:  2016-08-02       Impact factor: 3.641

Review 9.  Advanced Potential Energy Surfaces for Molecular Simulation.

Authors:  Alex Albaugh; Henry A Boateng; Richard T Bradshaw; Omar N Demerdash; Jacek Dziedzic; Yuezhi Mao; Daniel T Margul; Jason Swails; Qiao Zeng; David A Case; Peter Eastman; Lee-Ping Wang; Jonathan W Essex; Martin Head-Gordon; Vijay S Pande; Jay W Ponder; Yihan Shao; Chris-Kriton Skylaris; Ilian T Todorov; Mark E Tuckerman; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2016-09-22       Impact factor: 3.466

10.  General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field.

Authors:  Qiantao Wang; Joshua A Rackers; Chenfeng He; Rui Qi; Christophe Narth; Louis Lagardere; Nohad Gresh; Jay W Ponder; Jean-Philip Piquemal; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2015-04-28       Impact factor: 6.006

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.