Literature DB >> 26596167

A Classical Potential to Model the Adsorption of Biological Molecules on Oxidized Titanium Surfaces.

Julian Schneider1, Lucio Colombi Ciacchi1.   

Abstract

The behavior of titanium implants in physiological environments is governed by the thin oxide layer that forms spontaneously on the metal surface and mediates the interactions with adsorbate molecules. In order to study the adsorption of biomolecules on titanium in a realistic fashion, we first build up a model of an oxidized Ti surface in contact with liquid water by means of extensive first-principles molecular dynamics simulations. Taking the obtained structure as reference, we then develop a classical potential to model the Ti/TiOx/water interface. This is based on the mapping with Coulomb and Lennard-Jones potentials of the adsorption energy landscape of single water and ammonia molecules on the rutile TiO2(110) surface. The interactions with arbitrary organic molecules are obtained via standard combination rules to established biomolecular force fields. The transferability of our potential to the case of organic molecules adsorbing on the oxidized Ti surface is checked by comparing the classical potential energy surfaces of representative systems to quantum mechanical results at the level of density functional theory. Moreover, we calculate the heat of immersion of the TiO2 rutile surface and the detachment force of a single tyrosine residue from steered molecular dynamics simulations, finding good agreement with experimental reference data in both cases. As a first application, we study the adsorption behavior of the Arg-Gly-Asp (RGD) peptide on the oxidized titanium surface, focusing particularly on the calculation of the free energy of desorption.

Entities:  

Year:  2010        PMID: 26596167     DOI: 10.1021/ct1004388

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  4 in total

1.  Perspectives on the simulation of protein-surface interactions using empirical force field methods.

Authors:  Robert A Latour
Journal:  Colloids Surf B Biointerfaces       Date:  2014-06-30       Impact factor: 5.268

2.  Atoms-to-microns model for small solute transport through sticky nanochannels.

Authors:  Rogan Carr; Jeffrey Comer; Mark D Ginsberg; Aleksei Aksimentiev
Journal:  Lab Chip       Date:  2011-10-10       Impact factor: 6.799

3.  Microscopic Perspective on the Adsorption Isotherm of a Heterogeneous Surface.

Authors:  Rogan Carr; Jeffrey Comer; Mark D Ginsberg; Aleksei Aksimentiev
Journal:  J Phys Chem Lett       Date:  2011-07-02       Impact factor: 6.475

4.  Interaction of KRSR Peptide with Titanium Dioxide Anatase (100) Surface: A Molecular Dynamics Simulation Study.

Authors:  Tamás Tarjányi; Ferenc Bogár; Janos Minarovits; Márió Gajdács; Zsolt Tóth
Journal:  Int J Mol Sci       Date:  2021-12-09       Impact factor: 5.923

  4 in total

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