Literature DB >> 26594579

Crystal structure of (E)-1,3-bis-(6-methoxy-naphthalen-2-yl)prop-2-en-1-one.

Paresh N Patel1, Anju Chadha2.   

Abstract

In the title compound, C25H20O3, the central -C(=O)-C=C- chain is disordered over two positions about the central C atom, with an occupancy ratio of 0.848 (6):0.152 (6). The mol-ecule is twisted with the two naphthalene ring systems being inclined to one another by 52.91 (9)°. In the crystal, mol-ecules are linked by C-H⋯π inter-actions, forming a three-dimensional structure. The structure was refined as a two-component twin with a 180 ° rotation about the c* axis.

Entities:  

Keywords:  C—H⋯π inter­actions; bis-naphthalene; chalcone; crystal structure

Year:  2015        PMID: 26594579      PMCID: PMC4644999          DOI: 10.1107/S2056989015019714

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For natural sources of chalcones and their derivatives, see: Anderson & Markham (2006 ▸); Yadav et al. (2011 ▸). For examples of their biological activities, see: Liu et al. (2011 ▸); Siddiqui et al. (2012 ▸). For their use as synthons for the preparation of five- and six-membered ring systems, see: Powers et al. (1998 ▸). For their use as inter­mediates in the synthesis of pharmaceutical mol­ecules, see: Perozo-Rondon et al. (2006 ▸). For the crystal structure of a closely related compound, 3-(6-meth­oxy-2-naphth­yl)-1-(2-naphth­yl)prop-2-en-1-one, see: Yathirajan et al. (2006 ▸).

Experimental

Crystal data

C25H20O3 M = 368.41 Monoclinic a = 6.027 (5) Å b = 19.926 (5) Å c = 15.415 (5) Å β = 90.366 (5)° V = 1851.2 (17) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS: Bruker, 2004 ▸) T min = 0.932, T max = 0.951 3345 measured reflections 3345 independent reflections 1837 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.179 S = 1.13 3345 reflections 267 parameters 2 restraints H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.16 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: APEX2 and SAINT (Bruker, 2004 ▸); data reduction: SAINT and XPREP (Bruker, 2004 ▸); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: SHELXL2014 and PLATON (Spek, 2009 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015019714/su5219sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015019714/su5219Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015019714/su5219Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015019714/su5219fig1.tif The mol­ecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Only the major component of the disordered O atom is shown. Click here for additional data file. c . DOI: 10.1107/S2056989015019714/su5219fig2.tif A view along the c axis of the crystal packing of the title compound. CCDC reference: 1432044 Additional supporting information: crystallographic information; 3D view; checkCIF report
C25H20O3F(000) = 776
Mr = 368.41Dx = 1.322 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 6.027 (5) ÅCell parameters from 4691 reflections
b = 19.926 (5) Åθ = 2.6–22.4°
c = 15.415 (5) ŵ = 0.09 mm1
β = 90.366 (5)°T = 293 K
V = 1851.2 (17) Å3Block, colourless
Z = 40.30 × 0.20 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer1837 reflections with I > 2σ(I)
Radiation source: Sealed tubeRint = 0.072
ω and φ scanθmax = 25.3°, θmin = 2.4°
Absorption correction: multi-scan (SADABS: Bruker, 2004)h = −7→7
Tmin = 0.932, Tmax = 0.951k = −23→23
3345 measured reflectionsl = 0→18
3345 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.061w = 1/[σ2(Fo2) + (0.076P)2 + 0.242P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.179(Δ/σ)max < 0.001
S = 1.13Δρmax = 0.19 e Å3
3345 reflectionsΔρmin = −0.16 e Å3
267 parametersExtinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
2 restraintsExtinction coefficient: 0.0042 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refined as a 2-component twin.
xyzUiso*/UeqOcc. (<1)
O10.7149 (4)0.07041 (12)0.81151 (15)0.0752 (7)
O2A0.3022 (4)0.46629 (14)0.8854 (2)0.0831 (12)0.848 (6)
O2B0.3818 (18)0.5689 (8)0.9159 (10)0.075 (6)0.152 (6)
O31.0538 (4)0.94015 (12)0.91441 (16)0.0810 (8)
C10.9200 (6)0.05490 (18)0.7708 (3)0.0878 (12)
H1A0.92650.07690.71550.132*
H1B0.93110.00720.76280.132*
H1C1.04050.07010.80680.132*
C20.6696 (5)0.13625 (18)0.82763 (19)0.0588 (9)
C30.4657 (5)0.14718 (18)0.8680 (2)0.0637 (9)
H30.37640.11080.88210.076*
C40.3971 (5)0.20984 (18)0.88679 (19)0.0624 (9)
H40.26010.21610.91300.075*
C50.5308 (4)0.26629 (16)0.86723 (18)0.0507 (8)
C60.4623 (5)0.33174 (17)0.88371 (18)0.0582 (9)
H60.32250.33890.90710.070*
C70.5958 (5)0.38617 (16)0.86635 (19)0.0568 (8)
C80.8060 (5)0.37394 (18)0.8290 (2)0.0631 (9)
H80.90010.40980.81740.076*
C90.8711 (5)0.31106 (18)0.8100 (2)0.0619 (9)
H91.00840.30450.78420.074*
C100.7380 (4)0.25513 (16)0.82814 (18)0.0513 (8)
C110.8029 (5)0.18913 (17)0.80906 (19)0.0576 (8)
H110.93970.18150.78330.069*
C120.5122 (6)0.45453 (18)0.8827 (2)0.0683 (10)
H12B0.36020.46190.88640.082*0.152 (6)
C130.6636 (5)0.51023 (18)0.8930 (2)0.0664 (9)
H13A0.81280.50160.90390.080*
C140.5946 (5)0.57381 (18)0.8872 (2)0.0660 (9)
H14A0.44460.57960.87470.079*0.848 (6)
C150.7225 (5)0.63517 (17)0.89786 (19)0.0548 (8)
C160.6339 (5)0.69511 (17)0.87011 (19)0.0575 (9)
H160.49480.69480.84360.069*
C170.7436 (4)0.75620 (16)0.87992 (18)0.0514 (8)
C180.6536 (5)0.81769 (19)0.8512 (2)0.0628 (9)
H180.51630.81770.82340.075*
C190.7603 (5)0.87635 (18)0.8629 (2)0.0656 (9)
H190.69860.91610.84230.079*
C200.9658 (5)0.87709 (17)0.9066 (2)0.0613 (9)
C211.0620 (5)0.81927 (16)0.93433 (18)0.0534 (8)
H211.19990.82060.96170.064*
C220.9538 (4)0.75732 (16)0.92185 (17)0.0491 (7)
C231.0433 (5)0.69571 (16)0.94924 (19)0.0536 (8)
H231.18210.69530.97590.064*
C240.9338 (5)0.63677 (16)0.93804 (19)0.0573 (8)
H240.99860.59700.95700.069*
C251.2506 (6)0.94859 (18)0.9618 (3)0.0897 (12)
H25A1.22740.93511.02090.135*
H25B1.29410.99490.96030.135*
H25C1.36540.92150.93680.135*
U11U22U33U12U13U23
O10.0769 (16)0.0723 (18)0.0765 (16)−0.0081 (12)0.0102 (13)0.0067 (13)
O2A0.0531 (19)0.084 (2)0.112 (2)−0.0078 (14)0.0012 (15)0.0059 (17)
O2B0.039 (9)0.096 (13)0.091 (12)0.008 (7)−0.008 (7)−0.015 (9)
O30.0854 (17)0.0663 (17)0.0910 (18)−0.0005 (13)−0.0171 (14)0.0050 (13)
C10.081 (3)0.089 (3)0.093 (3)0.006 (2)0.014 (2)0.006 (2)
C20.055 (2)0.071 (2)0.0501 (19)−0.0080 (17)−0.0043 (15)0.0090 (17)
C30.057 (2)0.073 (3)0.061 (2)−0.0186 (18)0.0040 (16)0.0117 (19)
C40.0439 (17)0.092 (3)0.052 (2)−0.0166 (18)0.0061 (14)0.0073 (19)
C50.0416 (16)0.071 (2)0.0393 (16)−0.0106 (15)−0.0027 (13)0.0049 (16)
C60.0461 (18)0.088 (3)0.0403 (17)−0.0165 (17)−0.0003 (13)−0.0003 (17)
C70.0517 (19)0.069 (2)0.0495 (19)−0.0129 (16)−0.0015 (14)−0.0002 (16)
C80.056 (2)0.072 (3)0.061 (2)−0.0228 (17)0.0017 (16)0.0061 (18)
C90.0464 (18)0.084 (3)0.056 (2)−0.0174 (17)0.0040 (15)0.0064 (19)
C100.0419 (16)0.072 (2)0.0400 (16)−0.0126 (16)−0.0033 (13)0.0063 (16)
C110.0439 (17)0.079 (2)0.0501 (19)−0.0083 (17)0.0025 (14)0.0114 (17)
C120.070 (2)0.082 (3)0.053 (2)−0.021 (2)0.0053 (17)0.0013 (18)
C130.058 (2)0.075 (3)0.066 (2)−0.0085 (19)−0.0023 (16)0.0023 (19)
C140.0477 (19)0.082 (3)0.069 (2)−0.0019 (18)−0.0021 (16)−0.014 (2)
C150.0490 (18)0.068 (2)0.0475 (18)0.0004 (16)−0.0006 (14)−0.0124 (16)
C160.0439 (17)0.077 (3)0.0512 (19)0.0023 (16)−0.0057 (14)−0.0156 (17)
C170.0464 (17)0.065 (2)0.0428 (17)0.0082 (16)−0.0002 (14)−0.0077 (15)
C180.0486 (18)0.086 (3)0.053 (2)0.0098 (18)−0.0033 (15)−0.0082 (19)
C190.063 (2)0.071 (3)0.063 (2)0.0156 (18)−0.0007 (17)0.0020 (18)
C200.063 (2)0.064 (2)0.057 (2)0.0004 (18)0.0026 (16)−0.0042 (17)
C210.0472 (17)0.066 (2)0.0469 (18)0.0018 (16)−0.0007 (14)0.0005 (16)
C220.0457 (16)0.063 (2)0.0389 (16)0.0029 (15)0.0028 (13)−0.0048 (15)
C230.0441 (17)0.070 (2)0.0469 (18)0.0016 (16)−0.0069 (13)−0.0036 (16)
C240.0536 (19)0.066 (2)0.0521 (19)0.0056 (16)−0.0011 (15)−0.0022 (16)
C250.081 (3)0.076 (3)0.112 (3)−0.006 (2)−0.013 (2)0.000 (2)
O1—C21.363 (4)C12—C131.445 (4)
O1—C11.423 (4)C12—H12B0.9300
O2A—C121.288 (4)C13—C141.336 (4)
O2B—C141.363 (11)C13—H13A0.9300
O3—C201.369 (4)C14—C151.454 (4)
O3—C251.400 (4)C14—H14A0.9300
C1—H1A0.9600C15—C161.375 (4)
C1—H1B0.9600C15—C241.413 (4)
C1—H1C0.9600C16—C171.393 (4)
C2—C111.357 (4)C16—H160.9300
C2—C31.398 (4)C17—C181.410 (4)
C3—C41.347 (4)C17—C221.419 (4)
C3—H30.9300C18—C191.346 (4)
C4—C51.417 (4)C18—H180.9300
C4—H40.9300C19—C201.406 (5)
C5—C61.392 (4)C19—H190.9300
C5—C101.408 (4)C20—C211.358 (4)
C6—C71.377 (4)C21—C221.409 (4)
C6—H60.9300C21—H210.9300
C7—C81.416 (4)C22—C231.405 (4)
C7—C121.475 (4)C23—C241.358 (4)
C8—C91.346 (4)C23—H230.9300
C8—H80.9300C24—H240.9300
C9—C101.402 (4)C25—H25A0.9600
C9—H90.9300C25—H25B0.9600
C10—C111.404 (4)C25—H25C0.9600
C11—H110.9300
C2—O1—C1117.7 (3)C14—C13—H13A119.2
C20—O3—C25118.9 (3)C12—C13—H13A119.2
O1—C1—H1A109.5C13—C14—O2B101.7 (7)
O1—C1—H1B109.5C13—C14—C15128.7 (3)
H1A—C1—H1B109.5O2B—C14—C15121.5 (7)
O1—C1—H1C109.5C13—C14—H14A115.6
H1A—C1—H1C109.5C15—C14—H14A115.6
H1B—C1—H1C109.5C16—C15—C24117.6 (3)
C11—C2—O1126.1 (3)C16—C15—C14119.4 (3)
C11—C2—C3119.8 (3)C24—C15—C14123.0 (3)
O1—C2—C3114.1 (3)C15—C16—C17122.8 (3)
C4—C3—C2120.8 (3)C15—C16—H16118.6
C4—C3—H3119.6C17—C16—H16118.6
C2—C3—H3119.6C16—C17—C18123.0 (3)
C3—C4—C5120.9 (3)C16—C17—C22119.0 (3)
C3—C4—H4119.5C18—C17—C22118.0 (3)
C5—C4—H4119.5C19—C18—C17122.0 (3)
C6—C5—C10119.4 (3)C19—C18—H18119.0
C6—C5—C4122.4 (3)C17—C18—H18119.0
C10—C5—C4118.2 (3)C18—C19—C20119.5 (3)
C7—C6—C5121.9 (3)C18—C19—H19120.3
C7—C6—H6119.1C20—C19—H19120.3
C5—C6—H6119.1C21—C20—O3125.9 (3)
C6—C7—C8117.9 (3)C21—C20—C19121.0 (3)
C6—C7—C12119.6 (3)O3—C20—C19113.1 (3)
C8—C7—C12122.4 (3)C20—C21—C22120.3 (3)
C9—C8—C7120.8 (3)C20—C21—H21119.9
C9—C8—H8119.6C22—C21—H21119.9
C7—C8—H8119.6C23—C22—C21123.2 (3)
C8—C9—C10121.9 (3)C23—C22—C17117.6 (3)
C8—C9—H9119.0C21—C22—C17119.2 (3)
C10—C9—H9119.0C24—C23—C22122.2 (3)
C9—C10—C11122.8 (3)C24—C23—H23118.9
C9—C10—C5118.0 (3)C22—C23—H23118.9
C11—C10—C5119.1 (3)C23—C24—C15120.7 (3)
C2—C11—C10121.1 (3)C23—C24—H24119.6
C2—C11—H11119.4C15—C24—H24119.6
C10—C11—H11119.4O3—C25—H25A109.5
O2A—C12—C13118.5 (3)O3—C25—H25B109.5
O2A—C12—C7120.7 (3)H25A—C25—H25B109.5
C13—C12—C7120.8 (3)O3—C25—H25C109.5
C13—C12—H12B119.6H25A—C25—H25C109.5
C7—C12—H12B119.6H25B—C25—H25C109.5
C14—C13—C12121.7 (3)
C1—O1—C2—C11−0.5 (5)C12—C13—C14—O2B30.1 (7)
C1—O1—C2—C3−179.7 (3)C12—C13—C14—C15178.3 (3)
C11—C2—C3—C41.7 (5)C13—C14—C15—C16165.1 (3)
O1—C2—C3—C4−179.0 (3)O2B—C14—C15—C16−52.0 (9)
C2—C3—C4—C5−0.9 (5)C13—C14—C15—C24−16.7 (5)
C3—C4—C5—C6178.3 (3)O2B—C14—C15—C24126.2 (8)
C3—C4—C5—C10−0.4 (4)C24—C15—C16—C170.1 (4)
C10—C5—C6—C7−2.9 (4)C14—C15—C16—C17178.4 (3)
C4—C5—C6—C7178.4 (3)C15—C16—C17—C18179.7 (3)
C5—C6—C7—C81.4 (4)C15—C16—C17—C22−1.3 (4)
C5—C6—C7—C12178.2 (3)C16—C17—C18—C19178.6 (3)
C6—C7—C8—C90.9 (5)C22—C17—C18—C19−0.3 (4)
C12—C7—C8—C9−175.8 (3)C17—C18—C19—C20−1.3 (5)
C7—C8—C9—C10−1.6 (5)C25—O3—C20—C21−6.3 (5)
C8—C9—C10—C11−179.9 (3)C25—O3—C20—C19175.6 (3)
C8—C9—C10—C50.0 (4)C18—C19—C20—C212.4 (5)
C6—C5—C10—C92.2 (4)C18—C19—C20—O3−179.4 (3)
C4—C5—C10—C9−179.1 (3)O3—C20—C21—C22−179.7 (3)
C6—C5—C10—C11−177.9 (3)C19—C20—C21—C22−1.8 (5)
C4—C5—C10—C110.8 (4)C20—C21—C22—C23−179.7 (3)
O1—C2—C11—C10179.5 (3)C20—C21—C22—C170.1 (4)
C3—C2—C11—C10−1.3 (4)C16—C17—C22—C231.8 (4)
C9—C10—C11—C2179.9 (3)C18—C17—C22—C23−179.2 (3)
C5—C10—C11—C20.0 (4)C16—C17—C22—C21−178.0 (3)
C6—C7—C12—O2A−22.7 (5)C18—C17—C22—C211.0 (4)
C8—C7—C12—O2A154.0 (3)C21—C22—C23—C24178.7 (3)
C6—C7—C12—C13159.5 (3)C17—C22—C23—C24−1.2 (4)
C8—C7—C12—C13−23.8 (5)C22—C23—C24—C150.0 (4)
O2A—C12—C13—C14−14.0 (5)C16—C15—C24—C230.6 (4)
C7—C12—C13—C14163.8 (3)C14—C15—C24—C23−177.6 (3)
D—H···AD—HH···AD···AD—H···A
C9—H9···Cg4i0.932.863.543 (4)131
C18—H18···Cg2ii0.932.853.611 (4)140
C23—H23···Cg2iii0.932.883.592 (4)134
Table 1

Hydrogen-bond geometry (, )

Cg2 and Cg4 are the centroids of rings C5-C10 and C17-C22, respectively.

DHA DHHA D A DHA
C9H9Cg4i 0.932.863.543(4)131
C18H18Cg2ii 0.932.853.611(4)140
C23H23Cg2iii 0.932.883.592(4)134

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

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Authors:  Vivek R Yadav; Sahdeo Prasad; Bokyung Sung; Bharat B Aggarwal
Journal:  Int Immunopharmacol       Date:  2010-12-22       Impact factor: 4.932

2.  Thermal solvent-free synthesis of chromonyl chalcones, pyrazolines and their in vitro antibacterial, antifungal activities.

Authors:  Zeba N Siddiqui; Shagufta Praveen; T N Mohammed Musthafa; Anis Ahmad; Asad U Khan
Journal:  J Enzyme Inhib Med Chem       Date:  2011-05-25       Impact factor: 5.051

3.  Synthesis of new chalcone derivatives bearing 2,4-thiazolidinedione and benzoic acid moieties as potential anti-bacterial agents.

Authors:  Xiao-Fang Liu; Chang-Ji Zheng; Liang-Peng Sun; Xue-Kun Liu; Hu-Ri Piao
Journal:  Eur J Med Chem       Date:  2011-05-12       Impact factor: 6.514

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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