Literature DB >> 26594570

Crystal structure of 3-bromo-pyridine N-oxide.

Matthew G Hutchinson1, Will E Lynch1, Clifford W Padgett1.   

Abstract

In the title compound, C5H4BrNO, there are two mol-ecules in the asymmetric unit that are related by a pseudo-inversion center. The two independent mol-ecules are approximately planar, with an observed (ring-ring) angle of 5.49 (13)°. The crystal structure exhibits a herringbone pattern with the zigzag running along the b-axis direction. The least-squares plane containing the rings of both asymmetric molecules and the plane containing the symmetrically related mol-ecules make a plane-plane angle of 66.69 (10)°, which makes the bend of the herringbone pattern. The bromo group on one mol-ecule points to the bromo group on the neighboring mol-ecule, with a Br⋯Br inter-molecular distance of 4.0408 (16) Å. The herringbone layer-to-layer distance is 3.431 (4) Å with a shift of 1.742 (7) Å. There are no short contacts, hydrogen bonds, or π-π inter-actions.

Entities:  

Keywords:  3-bromo­pyridine N-oxide; crystal structure; herringbone pattern

Year:  2015        PMID: 26594570      PMCID: PMC4645004          DOI: 10.1107/S205698901501909X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the synthesis of pyridine N-oxide-related compounds, see: Rousseau & Robins (1965 ▸). For an example of the chemistry of the title compound and its use in catalysed cyclization of alkynyl oxiranes and oxetanes, see: Gronnier et al. (2012 ▸).

Experimental

Crystal data

C5H4BrNO M = 174.00 Monoclinic, a = 7.832 (5) Å b = 18.398 (10) Å c = 8.298 (5) Å β = 92.906 (5)° V = 1194.2 (12) Å3 Z = 8 Mo Kα radiation μ = 6.77 mm−1 T = 173 K 0.3 × 0.3 × 0.2 mm

Data collection

Rigaku XtaLAB mini diffractometer Absorption correction: multi-scan (REQAB; Rigaku, 1998 ▸) T min = 0.189, T max = 0.257 12561 measured reflections 2732 independent reflections 1881 reflections with I > 2σ(I) R int = 0.056

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.092 S = 1.09 2732 reflections 146 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.67 e Å−3

Data collection: CrystalClear-SM Expert (Rigaku, 2011 ▸); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S205698901501909X/lh5792sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901501909X/lh5792Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901501909X/lh5792Isup3.cml Click here for additional data file. . DOI: 10.1107/S205698901501909X/lh5792fig1.tif The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 50% probability level. CCDC reference: 1430552 Additional supporting information: crystallographic information; 3D view; checkCIF report
C5H4BrNOF(000) = 672
Mr = 174.00Dx = 1.936 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 7.832 (5) ÅCell parameters from 2269 reflections
b = 18.398 (10) Åθ = 1.6–27.4°
c = 8.298 (5) ŵ = 6.77 mm1
β = 92.906 (5)°T = 173 K
V = 1194.2 (12) Å3Prism, colorless
Z = 80.3 × 0.3 × 0.2 mm
Rigaku XtaLAB mini diffractometer2732 independent reflections
Radiation source: Sealed Tube1881 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.056
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 2.7°
ω scansh = −10→10
Absorption correction: multi-scan (REQAB; Rigaku, 1998)k = −23→23
Tmin = 0.189, Tmax = 0.257l = −10→10
12561 measured reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.041w = 1/[σ2(Fo2) + (0.0225P)2 + 1.184P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.092(Δ/σ)max < 0.001
S = 1.09Δρmax = 0.50 e Å3
2732 reflectionsΔρmin = −0.67 e Å3
146 parametersExtinction correction: SHELXL2014 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.0059 (6)
Primary atom site location: structure-invariant direct methods
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Br20.67164 (6)0.60185 (3)0.12441 (6)0.0635 (2)
Br10.49425 (6)0.20942 (3)0.64430 (6)0.0639 (2)
O20.3319 (3)0.40963 (15)0.4152 (4)0.0529 (8)
N20.3246 (4)0.46580 (17)0.3178 (4)0.0405 (7)
O10.8214 (4)0.41613 (18)0.3888 (4)0.0688 (10)
N10.8315 (4)0.36058 (18)0.4861 (4)0.0458 (8)
C60.4715 (5)0.4993 (2)0.2786 (4)0.0399 (9)
H60.57650.48320.32220.048*
C20.6948 (5)0.2634 (2)0.6143 (4)0.0423 (9)
C10.6861 (5)0.3230 (2)0.5159 (5)0.0439 (9)
H10.58140.33800.46940.053*
C70.4632 (5)0.5572 (2)0.1741 (5)0.0419 (9)
C30.8487 (6)0.2403 (2)0.6878 (5)0.0494 (10)
H30.85480.19970.75470.059*
C100.1717 (5)0.4901 (2)0.2572 (5)0.0473 (10)
H100.07130.46810.28730.057*
C50.9832 (5)0.3399 (2)0.5567 (5)0.0500 (10)
H51.08180.36590.53720.060*
C40.9919 (5)0.2807 (2)0.6567 (5)0.0519 (11)
H41.09700.26730.70490.062*
C80.3107 (5)0.5830 (2)0.1079 (5)0.0525 (11)
H80.30620.62230.03750.063*
C90.1645 (5)0.5475 (3)0.1510 (5)0.0571 (12)
H90.05890.56280.10730.069*
U11U22U33U12U13U23
Br20.0504 (3)0.0630 (3)0.0777 (4)−0.0142 (2)0.0089 (2)0.0102 (2)
Br10.0534 (3)0.0706 (4)0.0674 (3)−0.0198 (2)0.0011 (2)0.0044 (2)
O20.0458 (17)0.0450 (17)0.0679 (19)−0.0009 (13)0.0033 (15)0.0144 (14)
N20.0385 (19)0.0358 (18)0.0471 (18)0.0008 (14)0.0014 (15)0.0007 (14)
O10.0456 (19)0.072 (2)0.089 (2)0.0061 (15)0.0075 (17)0.0410 (18)
N10.0341 (18)0.049 (2)0.055 (2)0.0025 (15)0.0058 (16)0.0087 (17)
C60.030 (2)0.044 (2)0.046 (2)−0.0008 (16)−0.0014 (17)−0.0017 (17)
C20.039 (2)0.047 (2)0.041 (2)−0.0045 (18)0.0027 (18)−0.0059 (18)
C10.034 (2)0.052 (3)0.046 (2)0.0011 (18)−0.0014 (17)−0.0006 (19)
C70.039 (2)0.040 (2)0.047 (2)−0.0015 (17)0.0039 (18)−0.0035 (18)
C30.053 (3)0.046 (2)0.048 (2)−0.002 (2)−0.009 (2)0.0049 (19)
C100.028 (2)0.054 (3)0.060 (3)0.0035 (18)0.0047 (19)0.001 (2)
C50.030 (2)0.061 (3)0.059 (3)0.0003 (19)0.0000 (19)0.006 (2)
C40.041 (2)0.055 (3)0.058 (3)0.006 (2)−0.008 (2)0.001 (2)
C80.046 (3)0.052 (3)0.059 (3)0.010 (2)0.003 (2)0.018 (2)
C90.039 (2)0.064 (3)0.067 (3)0.014 (2)−0.006 (2)0.004 (2)
Br2—C71.892 (4)C1—H10.9300
Br1—C21.885 (4)C7—C81.373 (5)
O2—N21.312 (4)C3—H30.9300
N2—C61.359 (5)C3—C41.381 (6)
N2—C101.351 (5)C10—H100.9300
O1—N11.302 (4)C10—C91.374 (6)
N1—C11.365 (5)C5—H50.9300
N1—C51.352 (5)C5—C41.369 (6)
C6—H60.9300C4—H40.9300
C6—C71.373 (5)C8—H80.9300
C2—C11.367 (5)C8—C91.380 (6)
C2—C31.390 (5)C9—H90.9300
O2—N2—C6119.6 (3)C2—C3—H3121.7
O2—N2—C10120.0 (3)C4—C3—C2116.7 (4)
C10—N2—C6120.4 (3)C4—C3—H3121.7
O1—N1—C1119.0 (3)N2—C10—H10120.0
O1—N1—C5120.9 (3)N2—C10—C9120.0 (4)
C5—N1—C1120.1 (3)C9—C10—H10120.0
N2—C6—H6120.4N1—C5—H5119.9
N2—C6—C7119.2 (3)N1—C5—C4120.2 (4)
C7—C6—H6120.4C4—C5—H5119.9
C1—C2—Br1119.0 (3)C3—C4—H4119.2
C1—C2—C3121.5 (4)C5—C4—C3121.7 (4)
C3—C2—Br1119.4 (3)C5—C4—H4119.2
N1—C1—C2119.9 (4)C7—C8—H8121.7
N1—C1—H1120.1C7—C8—C9116.7 (4)
C2—C1—H1120.1C9—C8—H8121.7
C6—C7—Br2117.4 (3)C10—C9—C8121.4 (4)
C6—C7—C8122.3 (4)C10—C9—H9119.3
C8—C7—Br2120.3 (3)C8—C9—H9119.3
Br2—C7—C8—C9−179.7 (3)N1—C5—C4—C30.4 (7)
Br1—C2—C1—N1−176.6 (3)C6—N2—C10—C92.2 (6)
Br1—C2—C3—C4177.8 (3)C6—C7—C8—C9−0.3 (6)
O2—N2—C6—C7178.8 (3)C2—C3—C4—C5−0.8 (6)
O2—N2—C10—C9−177.9 (4)C1—N1—C5—C40.8 (6)
N2—C6—C7—Br2179.8 (3)C1—C2—C3—C40.1 (6)
N2—C6—C7—C80.4 (6)C7—C8—C9—C101.1 (7)
N2—C10—C9—C8−2.1 (7)C3—C2—C1—N11.1 (6)
O1—N1—C1—C2178.3 (4)C10—N2—C6—C7−1.4 (5)
O1—N1—C5—C4−179.0 (4)C5—N1—C1—C2−1.6 (6)
  3 in total

1.  Cu(I)-catalyzed oxidative cyclization of alkynyl oxiranes and oxetanes.

Authors:  Colombe Gronnier; Søren Kramer; Yann Odabachian; Fabien Gagosz
Journal:  J Am Chem Soc       Date:  2011-12-19       Impact factor: 15.419

2.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  3 in total

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