Literature DB >> 26594560

Crystal structure of morpholin-4-ium cinnamate.

Graham Smith1.   

Abstract

In the anhydrous salt formed from the reaction of morpholine with cinnamic acid, C4H10NO(+)·C9H7O2 (-), the acid side chain in the trans-cinnamate anion is significantly rotated out of the benzene plane [C-C-C- C torsion angle = 158.54 (17)°]. In the crystal, one of the the aminium H atoms is involved in an asymmetric three-centre cation-anion N-H⋯(O,O') R 1 (2)(4) hydrogen-bonding inter-action with the two carboxyl-ate O-atom acceptors of the anion. The second aminium-H atom forms an inter-species N-H⋯Ocarboxyl-ate hydrogen bond. The result of the hydrogen bonding is the formation of a chain structure extending along [100]. Chains are linked by C-H⋯O inter-actions, forming a supra-molecular layer parallel to (01-1).

Entities:  

Keywords:  cinnamate; crystal structure; hydrogen bonding; morpholinium; salt

Year:  2015        PMID: 26594560      PMCID: PMC4645001          DOI: 10.1107/S2056989015019179

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background on morpholine compounds and the structure of an aliphatic morpholine salt, see: Kelley et al. (2013 ▸). For the structures of analogous morpholinate salts of some aromatic acid analogues, see: Chumakov et al. (2006 ▸); Ishida et al. (2001a ▸,b ▸,c ▸); Smith & Lynch (2015 ▸).

Experimental

Crystal data

C4H10NOC9H7O2 M = 235.27 Triclinic, a = 5.7365 (7) Å b = 9.7526 (10) Å c = 11.7760 (11) Å α = 103.270 (8)° β = 93.468 (9)° γ = 105.493 (10)° V = 612.69 (12) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 200 K 0.52 × 0.24 × 0.05 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014 ▸) T min = 0.965, T max = 0.990 4253 measured reflections 2393 independent reflections 1860 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.100 S = 1.01 2393 reflections 160 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.15 e Å−3

Data collection: CrysAlis PRO (Agilent, 2014 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸) within WinGX (Farrugia, 2012 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015019179/tk5397sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015019179/tk5397Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015019179/tk5397Isup3.cml Click here for additional data file. B A . DOI: 10.1107/S2056989015019179/tk5397fig1.tif The atom-numbering scheme and the mol­ecular conformation of the morpholinium anion (B) and the cinnamate cation (A) in the title salt, with displacement ellipsoids drawn at the 40% probability level. The cation–anion hydrogen bonds are shown as dashed lines. Click here for additional data file. a . DOI: 10.1107/S2056989015019179/tk5397fig2.tif The one-dimensional hydrogen-bonded polymeric structure extending along a. For symmetry codes, see Table 1. CCDC reference: 1430629 Additional supporting information: crystallographic information; 3D view; checkCIF report
C4H10NO+·C9H7O2Z = 2
Mr = 235.27F(000) = 252
Triclinic, P1Dx = 1.281 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.7365 (7) ÅCell parameters from 1133 reflections
b = 9.7526 (10) Åθ = 3.6–28.4°
c = 11.7760 (11) ŵ = 0.09 mm1
α = 103.270 (8)°T = 200 K
β = 93.468 (9)°Plate, colourless
γ = 105.493 (10)°0.52 × 0.24 × 0.05 mm
V = 612.69 (12) Å3
Oxford Diffraction Gemini-S CCD-detector diffractometer2393 independent reflections
Radiation source: Enhance (Mo) X-ray source1860 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.023
Detector resolution: 16.077 pixels mm-1θmax = 26.0°, θmin = 3.2°
ω scansh = −6→7
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)k = −12→12
Tmin = 0.965, Tmax = 0.990l = −14→14
4253 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.100H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0429P)2 + 0.0676P] where P = (Fo2 + 2Fc2)/3
2393 reflections(Δ/σ)max < 0.001
160 parametersΔρmax = 0.15 e Å3
2 restraintsΔρmin = −0.15 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O13A0.72059 (18)0.32720 (13)0.51574 (9)0.0370 (4)
O14A0.50422 (18)0.43517 (12)0.63746 (10)0.0323 (4)
C1A0.0669 (3)0.04440 (16)0.29775 (13)0.0256 (5)
C2A−0.1554 (3)0.00183 (17)0.34093 (15)0.0299 (5)
C3A−0.3583 (3)−0.09424 (18)0.26731 (16)0.0365 (6)
C4A−0.3450 (3)−0.14842 (18)0.14947 (16)0.0388 (6)
C5A−0.1258 (3)−0.10770 (18)0.10580 (15)0.0384 (6)
C6A0.0789 (3)−0.01381 (17)0.17959 (14)0.0321 (5)
C11A0.2852 (3)0.14762 (17)0.37395 (14)0.0262 (5)
C12A0.2907 (3)0.24300 (17)0.47379 (14)0.0276 (5)
C13A0.5213 (3)0.34254 (17)0.54714 (13)0.0258 (5)
O4B1.2058 (2)0.63511 (13)0.93100 (10)0.0398 (4)
N1B1.0764 (2)0.48489 (14)0.68969 (11)0.0253 (4)
C2B1.0246 (3)0.40701 (18)0.78354 (14)0.0310 (5)
C3B1.2089 (3)0.48633 (18)0.89057 (14)0.0354 (6)
C5B1.2676 (3)0.71057 (18)0.84191 (15)0.0355 (6)
C6B1.0875 (3)0.64183 (17)0.73241 (14)0.0298 (5)
H2A−0.167200.039300.421600.0360*
H3A−0.50810−0.123300.297900.0440*
H4A−0.48570−0.213200.098800.0470*
H5A−0.11570−0.144400.024800.0460*
H6A0.229900.011300.149200.0390*
H11A0.438200.145100.348300.0310*
H12A0.140000.248900.500700.0330*
H11B1.227 (3)0.4752 (17)0.6663 (13)0.0300*
H12B0.951 (3)0.4376 (17)0.6261 (12)0.0300*
H21B1.032300.304700.755500.0370*
H22B0.858300.403300.803700.0370*
H31B1.172100.435400.953900.0420*
H32B1.373700.484300.871200.0420*
H51B1.432500.708300.822900.0430*
H52B1.271300.814800.871600.0430*
H61B0.924300.650200.749500.0360*
H62B1.137700.694000.671000.0360*
U11U22U33U12U13U23
O13A0.0181 (6)0.0508 (8)0.0320 (7)0.0093 (5)−0.0013 (5)−0.0075 (6)
O14A0.0217 (6)0.0368 (7)0.0304 (6)0.0073 (5)−0.0001 (5)−0.0048 (5)
C1A0.0255 (8)0.0211 (8)0.0289 (9)0.0061 (7)−0.0022 (7)0.0063 (7)
C2A0.0265 (8)0.0251 (9)0.0334 (9)0.0043 (7)−0.0008 (7)0.0035 (7)
C3A0.0259 (9)0.0273 (9)0.0516 (12)0.0036 (7)−0.0029 (8)0.0075 (8)
C4A0.0375 (10)0.0242 (9)0.0453 (11)0.0036 (8)−0.0174 (8)0.0026 (8)
C5A0.0522 (11)0.0299 (10)0.0279 (9)0.0099 (9)−0.0062 (8)0.0026 (8)
C6A0.0349 (9)0.0279 (9)0.0312 (9)0.0069 (8)0.0013 (7)0.0065 (7)
C11A0.0213 (8)0.0277 (9)0.0294 (9)0.0065 (7)0.0021 (6)0.0080 (7)
C12A0.0191 (8)0.0311 (9)0.0303 (9)0.0072 (7)0.0019 (6)0.0039 (7)
C13A0.0213 (8)0.0295 (9)0.0261 (9)0.0076 (7)0.0007 (6)0.0064 (7)
O4B0.0518 (8)0.0356 (7)0.0241 (6)0.0068 (6)−0.0002 (5)0.0001 (5)
N1B0.0185 (6)0.0305 (8)0.0222 (7)0.0066 (6)−0.0013 (5)−0.0007 (6)
C2B0.0287 (8)0.0269 (9)0.0361 (10)0.0057 (7)0.0024 (7)0.0085 (8)
C3B0.0402 (10)0.0363 (10)0.0286 (9)0.0101 (8)−0.0011 (7)0.0088 (8)
C5B0.0380 (10)0.0257 (9)0.0351 (10)0.0009 (8)0.0011 (8)0.0032 (8)
C6B0.0296 (9)0.0280 (9)0.0321 (9)0.0082 (7)0.0045 (7)0.0085 (7)
O13A—C13A1.258 (2)C2A—H2A0.9500
O14A—C13A1.2553 (19)C3A—H3A0.9500
O4B—C3B1.425 (2)C4A—H4A0.9500
O4B—C5B1.424 (2)C5A—H5A0.9500
N1B—C2B1.480 (2)C6A—H6A0.9500
N1B—C6B1.480 (2)C11A—H11A0.9500
N1B—H11B0.944 (18)C12A—H12A0.9500
N1B—H12B0.943 (15)C2B—C3B1.503 (2)
C1A—C6A1.390 (2)C5B—C6B1.501 (2)
C1A—C2A1.396 (2)C2B—H21B0.9900
C1A—C11A1.471 (2)C2B—H22B0.9900
C2A—C3A1.381 (2)C3B—H31B0.9900
C3A—C4A1.382 (3)C3B—H32B0.9900
C4A—C5A1.382 (3)C5B—H51B0.9900
C5A—C6A1.382 (2)C5B—H52B0.9900
C11A—C12A1.314 (2)C6B—H61B0.9900
C12A—C13A1.493 (2)C6B—H62B0.9900
C3B—O4B—C5B109.75 (12)C1A—C6A—H6A120.00
C2B—N1B—C6B111.05 (12)C12A—C11A—H11A117.00
C6B—N1B—H11B110.9 (10)C1A—C11A—H11A117.00
C2B—N1B—H12B107.7 (10)C11A—C12A—H12A118.00
H11B—N1B—H12B109.8 (14)C13A—C12A—H12A118.00
C2B—N1B—H11B107.0 (10)N1B—C2B—C3B109.50 (14)
C6B—N1B—H12B110.3 (10)O4B—C3B—C2B110.91 (14)
C2A—C1A—C11A121.67 (14)O4B—C5B—C6B111.36 (14)
C6A—C1A—C11A120.00 (15)N1B—C6B—C5B109.46 (14)
C2A—C1A—C6A118.33 (15)N1B—C2B—H21B110.00
C1A—C2A—C3A120.55 (16)N1B—C2B—H22B110.00
C2A—C3A—C4A120.46 (17)C3B—C2B—H21B110.00
C3A—C4A—C5A119.55 (16)C3B—C2B—H22B110.00
C4A—C5A—C6A120.21 (16)H21B—C2B—H22B108.00
C1A—C6A—C5A120.88 (16)O4B—C3B—H31B109.00
C1A—C11A—C12A126.79 (16)O4B—C3B—H32B109.00
C11A—C12A—C13A123.45 (16)C2B—C3B—H31B109.00
O13A—C13A—O14A123.98 (15)C2B—C3B—H32B109.00
O13A—C13A—C12A118.14 (14)H31B—C3B—H32B108.00
O14A—C13A—C12A117.87 (15)O4B—C5B—H51B109.00
C1A—C2A—H2A120.00O4B—C5B—H52B109.00
C3A—C2A—H2A120.00C6B—C5B—H51B109.00
C4A—C3A—H3A120.00C6B—C5B—H52B109.00
C2A—C3A—H3A120.00H51B—C5B—H52B108.00
C3A—C4A—H4A120.00N1B—C6B—H61B110.00
C5A—C4A—H4A120.00N1B—C6B—H62B110.00
C6A—C5A—H5A120.00C5B—C6B—H61B110.00
C4A—C5A—H5A120.00C5B—C6B—H62B110.00
C5A—C6A—H6A120.00H61B—C6B—H62B108.00
C3B—O4B—C5B—C6B61.19 (17)C1A—C2A—C3A—C4A−0.7 (3)
C5B—O4B—C3B—C2B−61.29 (17)C2A—C3A—C4A—C5A1.0 (3)
C2B—N1B—C6B—C5B54.09 (17)C3A—C4A—C5A—C6A0.2 (3)
C6B—N1B—C2B—C3B−54.46 (17)C4A—C5A—C6A—C1A−1.8 (3)
C2A—C1A—C6A—C5A2.1 (2)C1A—C11A—C12A—C13A178.94 (15)
C6A—C1A—C11A—C12A158.54 (17)C11A—C12A—C13A—O13A−5.0 (2)
C11A—C1A—C6A—C5A−178.16 (16)C11A—C12A—C13A—O14A175.97 (16)
C2A—C1A—C11A—C12A−21.7 (3)N1B—C2B—C3B—O4B57.95 (17)
C6A—C1A—C2A—C3A−0.8 (2)O4B—C5B—C6B—N1B−57.43 (18)
C11A—C1A—C2A—C3A179.41 (16)
D—H···AD—HH···AD···AD—H···A
N1B—H11B···O14Ai0.94 (2)1.77 (2)2.7052 (17)170 (2)
N1B—H12B···O13A0.94 (2)1.73 (2)2.6643 (17)172 (2)
N1B—H12B···O14A0.94 (2)2.57 (2)3.1868 (17)123 (1)
C4A—H4A···O4Bii0.952.463.393 (2)167
C11A—H11A···O13A0.952.482.812 (2)101
C6B—H62B···O13Aiii0.992.373.234 (2)145
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1BH11BO14A i 0.94(2)1.77(2)2.7052(17)170(2)
N1BH12BO13A 0.94(2)1.73(2)2.6643(17)172(2)
N1BH12BO14A 0.94(2)2.57(2)3.1868(17)123(1)
C4AH4AO4B ii 0.952.463.393(2)167
C6BH62BO13A iii 0.992.373.234(2)145

Symmetry codes: (i) ; (ii) ; (iii) .

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