Literature DB >> 26594548

Crystal structure of N'-[(E)-3,5-di-chloro-2-hy-droxy-benzyl-idene]-4-nitro-benzo-hydrazide di-methyl-formamide monosolvate.

Bibitha Joseph1, N R Sajitha1, M Sithambaresan2, E B Seena3, M R Prathapachandra Kurup1.   

Abstract

In the title compound, C14H9Cl2N3O4·C3H7NO, the hydrazone mol-ecule adopts an E conformation with respect to azomethine bond, and the dihedral angle between the two aromatic rings [8.96 (11)°] shows that the rings are almost co-planar. The planar conformation of the mol-ecule is stabilized by the intra-molecular O-H⋯N hydrogen bond involving the OH group and azomethine N atom. The azomethine and keto bond distances [1.269 (2) and 1.210 (2) Å, respectively] are very close to the formal C=N and C=O bond lengths. The di-methyl-formamide solvent mol-ecule is connected to the hydrazone NH group via an N-H⋯O hydrogen bond. In the crystal, non-classical C-H⋯O and C-H⋯Cl hydrogen bonds link the mol-ecules into chains along [322]. A supra-molecular three-dimensional architecture is created by weak C-Cl⋯π [4.163 (3) Å, 83.26 (9)°] and π-π [centroid-centroid distance = 4.0395 (14) Å] inter-actions.

Entities:  

Keywords:  aroyl hydrazone; crystal structure; hydrogen bonding

Year:  2015        PMID: 26594548      PMCID: PMC4645068          DOI: 10.1107/S2056989015018290

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For applications of hydrazones in supra­molecular chemistry, see: Su & Aprahamian (2014 ▸). For biological applications of hydrazones and derivatives, see: Nair et al. (2014 ▸); Prasanna & Kumar (2013 ▸); Holló et al. (2014 ▸). For the synthesis of related compounds, see: Bessy et al. (2006 ▸).

Experimental

Crystal data

C14H9Cl2N3O4·C3H7NO M = 427.24 Triclinic, a = 7.8853 (6) Å b = 11.9445 (10) Å c = 11.9521 (15) Å α = 114.408 (6)° β = 102.895 (7)° γ = 98.939 (5)° V = 959.60 (17) Å3 Z = 2 Mo Kα radiation μ = 0.38 mm−1 T = 296 K 0.40 × 0.11 × 0.09 mm

Data collection

Bruker Kappa APEXII CCD Diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▸) T min = 0.834, T max = 0.929 7569 measured reflections 4660 independent reflections 3000 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.159 S = 0.95 4660 reflections 263 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: APEX2 and SAINT (Bruker, 2004 ▸); data reduction: SAINT and XPREP (Bruker, 2004 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015018290/yk2106sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015018290/yk2106Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015018290/yk2106Isup3.cml Click here for additional data file. ORTEP . DOI: 10.1107/S2056989015018290/yk2106fig1.tif ORTEP view of the title compound, drawn with 50% probability displacement ellipsoids for the non-H atoms. Click here for additional data file. c . DOI: 10.1107/S2056989015018290/yk2106fig2.tif Diagram showing mol­ecular packing viewed along the c axis along with inter­molecular inter­actions.. CCDC reference: 1428612 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H9Cl2N3O4·C3H7NOZ = 2
Mr = 427.24F(000) = 440
Triclinic, P1Dx = 1.479 Mg m3
a = 7.8853 (6) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.9445 (10) ÅCell parameters from 2537 reflections
c = 11.9521 (15) Åθ = 2.8–28.1°
α = 114.408 (6)°µ = 0.38 mm1
β = 102.895 (7)°T = 296 K
γ = 98.939 (5)°Needle, pale yellow
V = 959.60 (17) Å30.40 × 0.11 × 0.09 mm
Bruker Kappa APEXII CCD Diffractometer3000 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
ω and φ scanθmax = 28.4°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −10→9
Tmin = 0.834, Tmax = 0.929k = −15→15
7569 measured reflectionsl = −15→15
4660 independent reflections
Refinement on F22 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.159w = 1/[σ2(Fo2) + (0.0998P)2 + 0.0446P] where P = (Fo2 + 2Fc2)/3
S = 0.95(Δ/σ)max = 0.001
4660 reflectionsΔρmax = 0.23 e Å3
263 parametersΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cl11.35723 (9)1.29047 (6)1.47197 (6)0.0756 (2)
Cl21.23273 (9)1.51632 (6)1.17091 (7)0.0756 (2)
O11.0508 (2)1.08266 (15)1.27329 (15)0.0576 (4)
O20.6756 (2)0.77509 (15)1.08867 (15)0.0652 (4)
O3−0.0311 (3)0.25861 (16)0.6472 (2)0.0864 (6)
O4−0.0770 (3)0.3439 (2)0.5227 (2)0.0989 (7)
O50.4796 (2)1.06202 (17)0.22900 (16)0.0668 (4)
N10.78454 (19)0.97794 (15)1.05922 (16)0.0457 (4)
N20.6378 (2)0.87905 (15)0.96978 (16)0.0454 (4)
N30.0045 (2)0.34550 (18)0.6219 (2)0.0619 (5)
N40.5894 (3)0.96448 (18)0.34168 (18)0.0616 (5)
C11.0866 (2)1.18037 (18)1.24598 (19)0.0441 (4)
C21.2306 (3)1.2870 (2)1.3331 (2)0.0512 (5)
C31.2741 (3)1.39056 (18)1.3111 (2)0.0529 (5)
H31.36941.46221.37140.063*
C41.1756 (3)1.38669 (19)1.1995 (2)0.0521 (5)
C51.0326 (2)1.28330 (19)1.1101 (2)0.0489 (5)
H50.96751.28241.03440.059*
C60.9853 (2)1.17920 (17)1.13350 (19)0.0426 (4)
C70.8316 (2)1.07285 (19)1.03936 (19)0.0464 (4)
H70.76731.07380.96450.056*
C80.5925 (2)0.77882 (18)0.99269 (18)0.0428 (4)
C90.4325 (2)0.67029 (17)0.89195 (18)0.0397 (4)
C100.3727 (3)0.57541 (19)0.9227 (2)0.0496 (5)
H100.42760.58411.00440.060*
C110.2333 (3)0.4681 (2)0.8348 (2)0.0548 (5)
H110.19440.40340.85510.066*
C120.1536 (2)0.45939 (18)0.7164 (2)0.0470 (4)
C130.2077 (3)0.5529 (2)0.6837 (2)0.0507 (5)
H130.14970.54490.60290.061*
C140.3485 (2)0.65882 (19)0.77184 (19)0.0456 (4)
H140.38730.72280.75060.055*
C150.4196 (5)0.8698 (3)0.2961 (4)0.1047 (11)
H15A0.32230.90220.26990.157*
H15B0.40520.85060.36450.157*
H15C0.41770.79340.22360.157*
C160.7510 (5)0.9501 (3)0.4148 (3)0.0998 (10)
H16A0.76920.86910.36410.150*
H16B0.73650.95380.49380.150*
H16C0.85411.01790.43490.150*
C170.6030 (3)1.0510 (2)0.3016 (2)0.0531 (5)
H170.71621.10870.33100.064*
H20.589 (3)0.888 (2)0.9019 (17)0.072 (8)*
H10.962 (3)1.028 (2)1.2106 (19)0.090 (9)*
U11U22U33U12U13U23
Cl10.0735 (4)0.0650 (4)0.0560 (3)−0.0053 (3)−0.0032 (3)0.0191 (3)
Cl20.0772 (4)0.0489 (3)0.1074 (5)0.0066 (3)0.0394 (4)0.0413 (4)
O10.0540 (8)0.0471 (9)0.0590 (9)−0.0035 (7)0.0066 (7)0.0249 (8)
O20.0644 (9)0.0599 (10)0.0530 (9)−0.0038 (7)−0.0047 (7)0.0286 (8)
O30.0830 (12)0.0449 (10)0.1029 (15)−0.0120 (8)0.0080 (11)0.0295 (10)
O40.0887 (13)0.0704 (12)0.0839 (13)−0.0243 (10)−0.0282 (10)0.0310 (11)
O50.0629 (9)0.0687 (11)0.0651 (10)0.0103 (8)0.0063 (8)0.0375 (9)
N10.0368 (8)0.0370 (8)0.0492 (9)0.0012 (6)0.0089 (7)0.0128 (7)
N20.0367 (8)0.0378 (8)0.0467 (9)−0.0013 (6)0.0027 (7)0.0152 (8)
N30.0514 (10)0.0408 (10)0.0705 (13)−0.0025 (8)0.0058 (9)0.0171 (9)
N40.0783 (12)0.0453 (10)0.0564 (11)0.0101 (9)0.0138 (9)0.0257 (9)
C10.0418 (9)0.0370 (10)0.0489 (11)0.0042 (7)0.0173 (8)0.0169 (9)
C20.0449 (10)0.0446 (11)0.0487 (11)0.0018 (8)0.0140 (9)0.0119 (9)
C30.0440 (10)0.0368 (11)0.0579 (12)−0.0015 (8)0.0172 (9)0.0078 (10)
C40.0468 (10)0.0365 (10)0.0702 (14)0.0055 (8)0.0282 (10)0.0197 (10)
C50.0441 (10)0.0433 (11)0.0584 (12)0.0096 (8)0.0187 (9)0.0228 (10)
C60.0363 (8)0.0342 (9)0.0487 (10)0.0052 (7)0.0155 (8)0.0122 (8)
C70.0389 (9)0.0423 (11)0.0495 (11)0.0074 (8)0.0094 (8)0.0174 (9)
C80.0372 (9)0.0391 (10)0.0424 (10)0.0035 (7)0.0080 (7)0.0150 (8)
C90.0349 (8)0.0351 (9)0.0441 (9)0.0061 (7)0.0098 (7)0.0165 (8)
C100.0497 (10)0.0467 (11)0.0499 (11)0.0057 (8)0.0082 (9)0.0267 (10)
C110.0526 (11)0.0412 (11)0.0673 (13)0.0016 (8)0.0121 (10)0.0298 (11)
C120.0399 (9)0.0345 (10)0.0540 (11)0.0019 (7)0.0092 (8)0.0149 (9)
C130.0478 (10)0.0463 (11)0.0484 (11)0.0042 (8)0.0053 (9)0.0214 (9)
C140.0424 (9)0.0399 (10)0.0507 (11)0.0031 (8)0.0093 (8)0.0232 (9)
C150.121 (3)0.072 (2)0.111 (2)−0.0127 (17)0.039 (2)0.0468 (19)
C160.128 (3)0.086 (2)0.0810 (19)0.041 (2)0.0054 (18)0.0460 (18)
C170.0537 (11)0.0449 (11)0.0524 (12)0.0040 (9)0.0108 (9)0.0216 (10)
Cl1—C21.716 (2)C5—C61.397 (3)
Cl2—C41.734 (2)C5—H50.9300
O1—C11.342 (2)C6—C71.442 (3)
O1—H10.835 (10)C7—H70.9300
O2—C81.210 (2)C8—C91.498 (2)
O3—N31.206 (2)C9—C101.378 (3)
O4—N31.207 (3)C9—C141.380 (3)
O5—C171.214 (2)C10—C111.375 (3)
N1—C71.269 (2)C10—H100.9300
N1—N21.363 (2)C11—C121.367 (3)
N2—C81.348 (2)C11—H110.9300
N2—H20.872 (10)C12—C131.367 (3)
N3—C121.466 (3)C13—C141.372 (3)
N4—C171.306 (3)C13—H130.9300
N4—C151.437 (3)C14—H140.9300
N4—C161.454 (3)C15—H15A0.9600
C1—C21.386 (3)C15—H15B0.9600
C1—C61.396 (3)C15—H15C0.9600
C2—C31.376 (3)C16—H16A0.9600
C3—C41.363 (3)C16—H16B0.9600
C3—H30.9300C16—H16C0.9600
C4—C51.370 (3)C17—H170.9300
C1—O1—H1105 (2)N2—C8—C9116.40 (16)
C7—N1—N2118.71 (16)C10—C9—C14119.48 (17)
C8—N2—N1117.36 (15)C10—C9—C8116.28 (16)
C8—N2—H2128.4 (18)C14—C9—C8124.20 (16)
N1—N2—H2114.1 (18)C11—C10—C9121.12 (18)
O3—N3—O4123.3 (2)C11—C10—H10119.4
O3—N3—C12118.6 (2)C9—C10—H10119.4
O4—N3—C12118.07 (19)C12—C11—C10117.92 (18)
C17—N4—C15120.0 (2)C12—C11—H11121.0
C17—N4—C16120.2 (2)C10—C11—H11121.0
C15—N4—C16119.0 (2)C13—C12—C11122.36 (18)
O1—C1—C2118.66 (18)C13—C12—N3119.26 (19)
O1—C1—C6122.82 (16)C11—C12—N3118.38 (18)
C2—C1—C6118.52 (17)C12—C13—C14119.15 (18)
C3—C2—C1121.57 (19)C12—C13—H13120.4
C3—C2—Cl1119.12 (16)C14—C13—H13120.4
C1—C2—Cl1119.31 (16)C13—C14—C9119.95 (17)
C4—C3—C2119.06 (18)C13—C14—H14120.0
C4—C3—H3120.5C9—C14—H14120.0
C2—C3—H3120.5N4—C15—H15A109.5
C3—C4—C5121.61 (19)N4—C15—H15B109.5
C3—C4—Cl2119.00 (16)H15A—C15—H15B109.5
C5—C4—Cl2119.39 (18)N4—C15—H15C109.5
C4—C5—C6119.5 (2)H15A—C15—H15C109.5
C4—C5—H5120.2H15B—C15—H15C109.5
C6—C5—H5120.2N4—C16—H16A109.5
C1—C6—C5119.70 (17)N4—C16—H16B109.5
C1—C6—C7121.85 (16)H16A—C16—H16B109.5
C5—C6—C7118.44 (18)N4—C16—H16C109.5
N1—C7—C6119.61 (18)H16A—C16—H16C109.5
N1—C7—H7120.2H16B—C16—H16C109.5
C6—C7—H7120.2O5—C17—N4125.3 (2)
O2—C8—N2122.52 (17)O5—C17—H17117.4
O2—C8—C9121.07 (17)N4—C17—H17117.4
C7—N1—N2—C8179.15 (17)N1—N2—C8—C9−179.03 (15)
O1—C1—C2—C3−179.80 (17)O2—C8—C9—C108.0 (3)
C6—C1—C2—C30.3 (3)N2—C8—C9—C10−172.24 (16)
O1—C1—C2—Cl10.0 (3)O2—C8—C9—C14−169.75 (19)
C6—C1—C2—Cl1−179.94 (14)N2—C8—C9—C1410.0 (3)
C1—C2—C3—C4−1.5 (3)C14—C9—C10—C111.4 (3)
Cl1—C2—C3—C4178.75 (15)C8—C9—C10—C11−176.44 (18)
C2—C3—C4—C51.2 (3)C9—C10—C11—C12−1.1 (3)
C2—C3—C4—Cl2−179.09 (15)C10—C11—C12—C13−0.1 (3)
C3—C4—C5—C60.3 (3)C10—C11—C12—N3−179.89 (18)
Cl2—C4—C5—C6−179.43 (13)O3—N3—C12—C13173.37 (19)
O1—C1—C6—C5−178.71 (16)O4—N3—C12—C13−7.0 (3)
C2—C1—C6—C51.2 (3)O3—N3—C12—C11−6.8 (3)
O1—C1—C6—C71.2 (3)O4—N3—C12—C11172.8 (2)
C2—C1—C6—C7−178.87 (18)C11—C12—C13—C140.9 (3)
C4—C5—C6—C1−1.5 (3)N3—C12—C13—C14−179.30 (18)
C4—C5—C6—C7178.56 (17)C12—C13—C14—C9−0.5 (3)
N2—N1—C7—C6179.29 (15)C10—C9—C14—C13−0.6 (3)
C1—C6—C7—N11.0 (3)C8—C9—C14—C13177.11 (18)
C5—C6—C7—N1−179.11 (16)C15—N4—C17—O52.2 (4)
N1—N2—C8—O20.7 (3)C16—N4—C17—O5172.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O5i0.87 (1)1.90 (1)2.757 (2)169 (3)
C3—H3···Cl1ii0.932.923.836 (2)169
C7—H7···O5i0.932.383.145 (3)139
C13—H13···O4iii0.932.423.231 (3)146
O1—H1···N10.84 (1)1.82 (2)2.581 (2)151 (3)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1N10.84(1)1.82(2)2.581(2)151(3)
N2H2O5i 0.87(1)1.90(1)2.757(2)169(3)
C3H3Cl1ii 0.932.923.836(2)169
C7H7O5i 0.932.383.145(3)139
C13H13O4iii 0.932.423.231(3)146

Symmetry codes: (i) ; (ii) ; (iii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
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Authors:  Rakesh S Nair; Mini Kuriakose; Veena Somasundaram; Vinesh Shenoi; M R Prathapachandra Kurup; Priya Srinivas
Journal:  Life Sci       Date:  2014-09-22       Impact factor: 5.037

Review 3.  Hydrazone-based switches, metallo-assemblies and sensors.

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Journal:  Chem Soc Rev       Date:  2014-01-16       Impact factor: 54.564

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

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