Literature DB >> 26594514

Crystal structure of cyclo-tris-(μ-3,4,5,6-tetra-fluoro-o-phenyl-ene-κ(2) C (1):C (2))trimercury-tetra-cyano-ethyl-ene (1/1).

Raúl Castañeda1, Tatiana V Timofeeva1, Victor N Khrustalev2.   

Abstract

The title compound, [Hg3(C6F4)3]·C6N4, contains one mol-ecule of tetra-cyano-ethyl-ene B per one mol-ecule of mercury macrocycle A, i.e., A•B, and crystallizes in the monoclinic space group C2/c. Macrocycle A and mol-ecule B both occupy special positions on a twofold rotation axis and the inversion centre, respectively. The supra-molecular unit [A•B] is built by the simultaneous coordination of one of the nitrile N atoms of B to the three mercury atoms of the macrocycle A. The Hg⋯N distances range from 2.990 (4) to 3.030 (4) Å and are very close to those observed in the related adducts of the macrocycle A with other nitrile derivatives. The mol-ecule of B is almost perpendicular to the mean plane of the macrocycle A at the dihedral angle of 88.20 (5)°. The donor-acceptor Hg⋯N inter-actions do not affect the C N bond lengths [1.136 (6) and 1.140 (6) Å]. The trans nitrile group of B coordinates to another macrocycle A, forming an infinite mixed-stack [A•B]∞ architecture toward [101]. The remaining N atoms of two nitrile groups of B are not engaged in any donor-acceptor inter-actions. In the crystal, the mixed stacks are held together by inter-molecular C-F⋯C N secondary inter-actions [2.846 (5)-2.925 (5) Å].

Entities:  

Keywords:  TGA; X-ray diffraction; complexation; crystal structure; tetra­cyano­ethyl­ene; trimeric perfluoro-o-phenyl­ene mercury

Year:  2015        PMID: 26594514      PMCID: PMC4644994          DOI: 10.1107/S2056989015019350

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Trimeric perfluoro-o-phenyl­ene mercury (A) is a versatile Lewis acid that is applied for complexation with different substrates, in particular, for the obtaining of charge-transfer complexes based on donor–acceptor inter­molecular inter­actions (Hasegawa et al., 2004 ▸). Importantly, some physical properties of the guest substrates can change upon complexation. For example, unusual optical properties of the organic mol­ecules in supra­molecular complexes with macrocycle A have previously been observed (Haneline et al., 2002 ▸; Elbjeirami et al., 2007 ▸; Filatov et al., 2009 ▸, 2011 ▸). Moreover, using complexation with A, the stabilization of different organic (di­phenyl­polyynes; Taylor & Gabbaï, 2006 ▸; Taylor et al., 2008 ▸) and metal-organic (nickelocene; Haneline & Gabbaï, 2004a ▸) mol­ecules was achieved under ambient conditions. In this paper, a complex of A with tetra­cyano­ethyl­ene (B) – an unstable dienophilic (σ-electron donor and π-electron acceptor) compound – [Hg3(C6F4)3]·C6N4, (I), was prepared and studied by X-ray diffraction analysis to get a deeper understanding of the complexation process.

Structural commentary

Complex (I) contains one mol­ecule of tetra­cyano­ethyl­ene B per one mol­ecule of the mercury macrocycle A, i.e., C18F12Hg3·C6N4 (A•B), and crystallizes in the monoclinic space group C2/c. Both macrocycle A and the mol­ecule of B occupy special positions on a twofold rotation axis and inversion centre, respectively. The supra­molecular unit of (I) is built by the simultaneous coordination of the nitrile N1 nitro­gen atom of B to the three mercury atoms of the macrocycle A (Fig. 1 ▸). The Hg⋯N distances range from 2.990 (4) to 3.030 (4) Å and are very close to those observed in related adducts of macrocycle A with other nitrile derivatives: aceto­nitrile [2.93 (1)–2.99 (1) Å], acrylo­nitrile [2.87 (1)–2.96 (1) Å] and benzo­nitrile [2.97 (1)–3.13 (1) Å] (Tikhonova et al., 2000 ▸) and 7,7,8,8-tetra­cyano­quinodi­methane (II) [3.102 (11)–3.134 (11) Å] (Haneline & Gabbaï, 2004b ▸). Thus, the N1 nitro­gen atom is essentially equidistant to the three Lewis acidic sites of the macrocycle A. The mol­ecule of B is almost perpendicular to the mean plane of macrocycle A, making a dihedral angle of 88.20 (5)°. It is very important to point out that the donor–acceptor Hg⋯N inter­actions do not affect the C N bond lengths [1.136 (6) and 1.140 (6) Å].
Figure 1

The supra­molecular unit of complex (I) (A•B). Displacement ellipsoids are drawn at the 50% probability level. Dashed lines indicate the inter­molecular secondary Hg⋯N inter­actions. [Symmetry codes: (i) 1 − x, y,  − z; (ii)  − x,  − y, 1 − z.]

Taking into account the intrinsic C symmetry of B, the trans nitrile group of this mol­ecule coordinates to another macrocycle A, forming an infinite mixed-stack [A•B]∞ architecture (Fig. 2 ▸). The remaining nitro­gen atoms of the two nitrile groups of B are not engaged in any donor–acceptor inter­actions.
Figure 2

The infinite mixed-stack [A•B]∞ architecture of (I). Dashed lines indicate the inter­molecular secondary Hg⋯N inter­actions.

Supra­molecular features

In the crystal, the mixed stacks toward [101] are held together by inter­molecular C—F⋯C N secondary inter­actions [F2⋯C11iii 2.864 (5), F5⋯C12iv 2.846 (5) and F6⋯C11v 2.925 (5) Å; symmetry codes: (iii) − + x,  + y, z; (iv) 1 − x, 1 − y, 1 − z; (v) − + x, − + y, z] (Fig. 3 ▸).
Figure 3

Crystal packing of complex (I) along the b axis, showing the infinite mixed stacks toward [101]. Dashed lines indicate the inter­molecular secondary Hg⋯N and F⋯C inter­actions.

Comparison with compound (II)

It is inter­esting to note that the crystal structures of (I) and (II) are very similar. In both complexes, the guest mol­ecules of tetra­cyano­ethyl­ene B and tetra­cyano­quinodi­methane C are arranged perpendicularly to macrocycle A, with the same coordination mode of the trans nitrile groups to the three mercury atoms (Fig. 4 ▸). However, the supra­molecular unit in (I) is A•B (a 1:1 ratio), whereas that in (II) is A•C•A (a 2:1 ratio) (Fig. 4 ▸). Beside the mol­ecules of C, complex (II) includes the additional solvate CS2 (D) mol­ecules. The mol­ecules of D participate in the construction of the supra­molecular architecture of (II), resulting in infinite mixed stacks [A•C•A•1.5D] ∞ (Fig. 4 ▸). Remarkably, the total number of donor–acceptor inter­molecular inter­actions within the infinite mixed stacks of (I) and (II) is equal ([12 Hg⋯N]∞ and [6 Hg⋯N + 6 Hg⋯S]∞, respectively).
Figure 4

The supra­molecular structure of complex (II) ([A•C•A•1.5D] ∞). Dashed lines indicate the inter­molecular secondary Hg⋯N inter­actions.

TGA analysis

Despite complexes (I) and (II) being structural analogs, they are substanti­ally different in their chemical stability. The crystalline complex (II) decomposes over a few days, while complex (I) is stable in the solid state for several months under ambient conditions. As free B decomposes rapidly upon reaction with moisture to produce toxic hydrogen cyanide, the high chemical stability of complex (I) is surprising. Moreover, the thermal stability of complex (I) has been studied by thermogravimetric analysis (TGA) which revealed that, upon complexation, tetra­cyano­ethyl­ene is stable to higher temperatures (Fig. 5 ▸). So, the free compound B starts to decompose at 363 K, but, being incorporated into the supra­molecular complex (I), B is stable up to 393 K. Complex (I) decomposes in two different steps. The first step of a 18.3% weight loss is attributed to molecule B because the much lower decomposition temperature of this molecule compared to macrocycle A. Consequently, the second weight loss of 81.7% is attributed to decomposition of macrocycle A. The complete decomposition of the free B is complete at 445 K; however, its final decomposition temperature is equal to 467 K within the supra­molecular complex (I). Final decomposition of complex (I) occurs at 573 K, and is likely due decomposition of macrocycle A.
Figure 5

TGA diagram of free B (in red) and complex (I) (in blue).

It is known that tetra­cyano­ethyl­ene is used not only as a component of charge-transfer complexes for organic electronics, but also in the preparation of organic magnets (Kao et al., 2012 ▸). Consequently, the increase of its thermal stability attracts special attention in the manufacturing of organic materials. The complexation method described here could help to solve this problem.

Synthesis and crystallization

Trimeric per­fluoro-o-phenyl­ene mercury was synthesized according to the procedure described previously (Sartori & Golloch, 1968 ▸), and purified by recrystallization in di­chloro­methane (Filatov et al., 2009 ▸). Tetra­cyano­ethyl­ene was acquired from TCI America. All solvents were HPLC grade and used without any further purification. Thermogravimetric analysis was performed with a Hitachi STA7200 SII NanoTechnology instrument (an aluminum crucible (45 mL) was used; heating rate was 10 K min−1). Stoichiometric amounts of trimeric per­fluoro-o-phenyl­ene mercury (63.8 mg, 59.6 mmol) and tetra­cyano­ethyl­ene (7.7 mg, 59.6 mmol) were dissolved in di­chloro­methane in separate tubes using ultrasonication. The contents of the tubes were mixed carefully, and then left for slow evaporation of the solvents. Complex (I) was obtained as yellow prismatic crystals, m.p. = 499–500 K.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 1 ▸. There is a high positive residual density of 1.19–1.78 e Å−3 near the Hg1 and Hg2 atoms due to considerable absorption effects which could not be completely corrected.
Table 1

Experimental details

Crystal data
Chemical formula[Hg3(C6F4)3]C6N4
M r 1174.05
Crystal system, space groupMonoclinic, C2/c
Temperature (K)100
a, b, c ()10.5658(11), 13.8297(15), 16.7166(18)
()90.575(1)
V (3)2442.5(5)
Z 4
Radiation typeMo K
(mm1)18.93
Crystal size (mm)0.15 0.15 0.10
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2003)
T min, T max 0.150, 0.250
No. of measured, independent and observed [I > 2(I)] reflections13813, 3560, 3404
R int 0.036
(sin /)max (1)0.703
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.023, 0.055, 1.06
No. of reflections3560
No. of parameters195
max, min (e 3)1.78, 1.70

Computer programs: APEX2 (Bruker, 2005 ▸), SAINT (Bruker, 2001 ▸), SHELXTL (Sheldrick, 2008 ▸) and SHELXL2014 (Sheldrick, 2015 ▸).

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015019350/ru2064sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015019350/ru2064Isup2.hkl CCDC reference: 1430883 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Hg3(C6F4)3]·C6N4F(000) = 2080
Mr = 1174.05Dx = 3.193 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 10.5658 (11) ÅCell parameters from 9624 reflections
b = 13.8297 (15) Åθ = 4.4–32.7°
c = 16.7166 (18) ŵ = 18.93 mm1
β = 90.575 (1)°T = 100 K
V = 2442.5 (5) Å3Prism, light-yellow
Z = 40.15 × 0.15 × 0.10 mm
Bruker APEXII CCD diffractometer3404 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
φ and ω scansθmax = 30.0°, θmin = 4.4°
Absorption correction: multi-scan (SADABS; Bruker, 2003)h = −14→14
Tmin = 0.150, Tmax = 0.250k = −19→19
13813 measured reflectionsl = −23→23
3560 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullPrimary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Secondary atom site location: difference Fourier map
wR(F2) = 0.055w = 1/[σ2(Fo2) + (0.0191P)2 + 19.1P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.002
3560 reflectionsΔρmax = 1.78 e Å3
195 parametersΔρmin = −1.70 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Hg10.50000.83281 (2)0.25000.01573 (6)
Hg20.36631 (2)0.60249 (2)0.31557 (2)0.01493 (5)
F10.3423 (3)0.9966 (2)0.33993 (17)0.0259 (6)
F20.1469 (3)0.98904 (19)0.44275 (17)0.0267 (6)
F30.0409 (3)0.8182 (2)0.48130 (17)0.0253 (5)
F40.1388 (3)0.65100 (19)0.42523 (17)0.0247 (5)
F50.3016 (3)0.38265 (19)0.35217 (16)0.0240 (5)
F60.4034 (3)0.21483 (18)0.30301 (17)0.0238 (5)
C10.3490 (4)0.8248 (3)0.3293 (3)0.0186 (7)
C20.2968 (4)0.9087 (3)0.3601 (3)0.0198 (8)
C30.1952 (4)0.9069 (3)0.4121 (3)0.0199 (8)
C40.1415 (4)0.8193 (3)0.4332 (3)0.0191 (8)
C50.1927 (4)0.7350 (3)0.4030 (2)0.0177 (7)
C60.2958 (4)0.7350 (3)0.3517 (2)0.0153 (7)
C70.4474 (4)0.4743 (3)0.2765 (2)0.0161 (7)
C80.4008 (4)0.3863 (3)0.3008 (2)0.0173 (7)
C90.4501 (4)0.2987 (3)0.2762 (3)0.0189 (8)
N10.6254 (4)0.6785 (3)0.3521 (2)0.0213 (7)
N20.9176 (4)0.5836 (3)0.5355 (3)0.0289 (8)
C100.7588 (4)0.7081 (3)0.4799 (2)0.0165 (7)
C110.6861 (4)0.6895 (3)0.4081 (2)0.0174 (7)
C120.8478 (4)0.6369 (3)0.5080 (2)0.0198 (7)
U11U22U33U12U13U23
Hg10.01452 (9)0.01481 (10)0.01793 (10)0.0000.00398 (7)0.000
Hg20.01430 (7)0.01349 (8)0.01709 (8)0.00109 (4)0.00400 (5)0.00000 (5)
F10.0273 (13)0.0178 (12)0.0327 (14)−0.0010 (10)0.0092 (11)0.0003 (10)
F20.0296 (14)0.0186 (13)0.0321 (14)0.0050 (10)0.0088 (11)−0.0055 (10)
F30.0209 (12)0.0275 (14)0.0277 (13)0.0033 (10)0.0111 (10)−0.0001 (11)
F40.0243 (13)0.0192 (12)0.0308 (14)−0.0003 (10)0.0110 (10)0.0012 (10)
F50.0237 (13)0.0204 (13)0.0281 (13)−0.0003 (10)0.0139 (10)0.0032 (10)
F60.0251 (13)0.0132 (12)0.0333 (14)−0.0026 (9)0.0073 (11)0.0029 (10)
C10.0174 (18)0.0188 (19)0.0195 (18)0.0010 (14)0.0016 (14)0.0010 (14)
C20.0200 (19)0.0171 (19)0.0225 (19)0.0003 (14)0.0045 (15)−0.0001 (15)
C30.0190 (18)0.0184 (19)0.0223 (19)0.0091 (14)0.0018 (15)−0.0041 (15)
C40.0142 (17)0.023 (2)0.0206 (18)0.0024 (14)0.0054 (14)−0.0003 (15)
C50.0181 (18)0.0180 (18)0.0171 (17)0.0014 (14)0.0023 (14)0.0010 (14)
C60.0142 (16)0.0158 (18)0.0161 (17)0.0034 (13)0.0031 (13)−0.0007 (13)
C70.0148 (17)0.0149 (17)0.0186 (17)0.0038 (13)0.0053 (14)0.0002 (14)
C80.0159 (17)0.0188 (19)0.0173 (17)0.0026 (14)0.0035 (14)0.0019 (14)
C90.0177 (18)0.0161 (18)0.0228 (19)−0.0020 (14)0.0001 (15)0.0018 (15)
N10.0216 (17)0.0193 (17)0.0231 (17)−0.0011 (13)0.0044 (13)0.0001 (13)
N20.028 (2)0.028 (2)0.031 (2)0.0051 (16)0.0072 (16)0.0016 (16)
C100.0143 (16)0.0169 (18)0.0184 (17)−0.0012 (13)0.0030 (13)0.0010 (14)
C110.0182 (18)0.0166 (18)0.0174 (17)−0.0001 (14)0.0036 (14)−0.0011 (14)
C120.0196 (18)0.0195 (19)0.0205 (18)0.0001 (15)0.0030 (14)−0.0006 (15)
Hg1—C12.087 (4)C2—C31.389 (6)
Hg1—N13.030 (4)C3—C41.385 (6)
Hg2—C62.071 (4)C4—C51.382 (6)
Hg2—C72.077 (4)C5—C61.394 (5)
Hg2—N12.990 (4)C7—C81.375 (6)
F1—C21.351 (5)C7—C7i1.429 (7)
F2—C31.348 (5)C8—C91.384 (6)
F3—C41.340 (4)C9—C9i1.377 (8)
F4—C51.347 (5)N1—C111.140 (6)
F5—C81.363 (5)N2—C121.136 (6)
F6—C91.339 (5)C10—C10ii1.355 (8)
C1—C21.387 (6)C10—C121.437 (6)
C1—C61.415 (6)C10—C111.441 (6)
C1—Hg1—C1i173.9 (2)C1—C6—Hg2123.7 (3)
C6—Hg2—C7176.24 (16)C8—C7—C7i117.8 (2)
C2—C1—C6118.4 (4)C8—C7—Hg2120.8 (3)
C2—C1—Hg1120.0 (3)C7i—C7—Hg2121.39 (11)
C6—C1—Hg1121.6 (3)F5—C8—C7119.9 (3)
F1—C2—C1121.1 (4)F5—C8—C9116.7 (4)
F1—C2—C3116.8 (4)C7—C8—C9123.4 (4)
C1—C2—C3122.1 (4)F6—C9—C9i120.0 (2)
F2—C3—C4118.9 (4)F6—C9—C8121.2 (4)
F2—C3—C2121.4 (4)C9i—C9—C8118.8 (2)
C4—C3—C2119.7 (4)C11—N1—Hg2136.2 (3)
F3—C4—C5121.7 (4)C11—N1—Hg1127.4 (3)
F3—C4—C3119.5 (4)Hg2—N1—Hg174.82 (9)
C5—C4—C3118.9 (4)C10ii—C10—C12121.1 (5)
F4—C5—C4117.3 (4)C10ii—C10—C11119.4 (5)
F4—C5—C6120.3 (4)C12—C10—C11119.5 (4)
C4—C5—C6122.4 (4)N1—C11—C10176.9 (5)
C5—C6—C1118.6 (4)N2—C12—C10175.2 (5)
C5—C6—Hg2117.7 (3)
C6—C1—C2—F1−179.0 (4)F4—C5—C6—C1179.4 (4)
Hg1—C1—C2—F1−0.2 (6)C4—C5—C6—C1−0.6 (6)
C6—C1—C2—C30.3 (6)F4—C5—C6—Hg2−2.5 (5)
Hg1—C1—C2—C3179.1 (3)C4—C5—C6—Hg2177.5 (3)
F1—C2—C3—F2−1.9 (6)C2—C1—C6—C50.7 (6)
C1—C2—C3—F2178.8 (4)Hg1—C1—C6—C5−178.1 (3)
F1—C2—C3—C4177.9 (4)C2—C1—C6—Hg2−177.2 (3)
C1—C2—C3—C4−1.4 (7)Hg1—C1—C6—Hg24.0 (5)
F2—C3—C4—F32.0 (6)C7i—C7—C8—F5179.2 (4)
C2—C3—C4—F3−177.8 (4)Hg2—C7—C8—F5−1.1 (5)
F2—C3—C4—C5−178.7 (4)C7i—C7—C8—C9−0.4 (7)
C2—C3—C4—C51.5 (6)Hg2—C7—C8—C9179.3 (3)
F3—C4—C5—F4−1.2 (6)F5—C8—C9—F6−1.2 (6)
C3—C4—C5—F4179.5 (4)C7—C8—C9—F6178.4 (4)
F3—C4—C5—C6178.8 (4)F5—C8—C9—C9i179.5 (5)
C3—C4—C5—C6−0.5 (6)C7—C8—C9—C9i−0.8 (8)
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