Literature DB >> 26594488

Crystal structure of (E)-4-[N-(7-methyl-2-phenyl-imidazo[1,2-a]pyridin-3-yl)carboximido-yl]phenol.

Abdelmalik Elaatiaoui1, Rafik Saddik2, Noureddine Benchat2, Mohamed Saadi3, Lahcen El Ammari3.   

Abstract

The mol-ecule of the title compound, C21H17N3O, is built up from fused five- and six-membered rings connected to a methyl group, a phenyl ring and an (imino-meth-yl)phenol group. The fused ring system is almost planar (r.m.s. deviation = 0.031 Å) and forms dihedral angles of 64.97 (7) and 18.52 (6)° with the phenyl ring and the (imino-meth-yl)phenol group, respectively. In the crystal, centrosymmetric mol-ecules are linked by pairs of C-H⋯π inter-actions into dimeric units, which are further connected by O-H⋯N hydrogen bonds to form layers parallel to (101).

Entities:  

Keywords:  C—H⋯π inter­actions; crystal structure; hydrogen bonding; imidazo[1,2a]pyridine derivative

Year:  2015        PMID: 26594488      PMCID: PMC4647394          DOI: 10.1107/S2056989015017843

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activities of imidazo[1,2a]pyridine derivatives, see: Solomons et al. (1997 ▸); Bhandari et al. (2008 ▸); Ertl et al. (2000 ▸). For the synthesis of related compounds, see: Radi et al. (2015 ▸); Elaatiaoui et al. (2014 ▸).

Experimental

Crystal data

C21H17N3O M = 327.38 Monoclinic a = 12.295 (3) Å b = 9.587 (2) Å c = 14.977 (4) Å β = 101.548 (1)° V = 1729.6 (7) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.42 × 0.31 × 0.26 mm

Data collection

Bruker X8 APEX Diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.673, T max = 0.746 26727 measured reflections 4126 independent reflections 2970 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.140 S = 1.02 4126 reflections 226 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.18 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014/7 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015017843/rz5169sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017843/rz5169Isup2.hkl Click here for additional data file. . DOI: 10.1107/S2056989015017843/rz5169fig1.tif The mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. H atoms are represented as small circles of arbitrary radius. Click here for additional data file. . DOI: 10.1107/S2056989015017843/rz5169fig2.tif Packing diagram of the title compound showing the fornation of a layer parallel to the (1 0 1) plane by O—H⋯N hydrogen bonds cyan dotted lines) and C—H⋯π hydrogen inter­actions (red dotted lines). Hydrogen atoms not invoolved in hydrogen bonding are omitted. CCDC reference: 1426925 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H17N3OF(000) = 688
Mr = 327.38Dx = 1.257 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 12.295 (3) ÅCell parameters from 4126 reflections
b = 9.587 (2) Åθ = 2.4–27.9°
c = 14.977 (4) ŵ = 0.08 mm1
β = 101.548 (1)°T = 296 K
V = 1729.6 (7) Å3Block, green
Z = 40.42 × 0.31 × 0.26 mm
Bruker X8 APEX Diffractometer4126 independent reflections
Radiation source: fine-focus sealed tube2970 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
φ and ω scansθmax = 27.9°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −16→16
Tmin = 0.673, Tmax = 0.746k = −12→12
26727 measured reflectionsl = −15→19
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.140w = 1/[σ2(Fo2) + (0.0656P)2 + 0.4096P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4126 reflectionsΔρmax = 0.30 e Å3
226 parametersΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.54952 (12)0.49279 (15)0.29735 (10)0.0451 (3)
C20.50833 (14)0.40312 (17)0.22392 (11)0.0535 (4)
H20.55520.37130.18670.064*
C30.39967 (15)0.36297 (19)0.20743 (12)0.0615 (4)
C40.33099 (15)0.4141 (2)0.26548 (14)0.0695 (5)
H40.25720.38580.25550.083*
C50.36876 (13)0.5026 (2)0.33486 (13)0.0620 (5)
H50.32190.53490.37190.074*
C60.53862 (12)0.62960 (16)0.41673 (10)0.0452 (3)
C70.64653 (12)0.62297 (15)0.40304 (9)0.0418 (3)
C80.75103 (12)0.68006 (16)0.45771 (9)0.0436 (3)
C90.83189 (14)0.58748 (19)0.50032 (11)0.0561 (4)
H90.81930.49200.49400.067*
C100.93079 (16)0.6352 (2)0.55190 (12)0.0696 (5)
H100.98390.57190.58050.083*
C110.95080 (16)0.7758 (3)0.56102 (14)0.0751 (6)
H111.01700.80790.59640.090*
C120.87302 (17)0.8688 (2)0.51789 (14)0.0727 (5)
H120.88720.96410.52320.087*
C130.77345 (14)0.82168 (18)0.46638 (12)0.0579 (4)
H130.72120.88560.43740.069*
C140.52384 (14)0.78868 (19)0.52891 (12)0.0562 (4)
H140.59410.81930.52370.067*
C150.47106 (12)0.85783 (17)0.59525 (10)0.0484 (4)
C160.36939 (12)0.81542 (16)0.61444 (10)0.0470 (3)
H160.33180.74080.58260.056*
C170.32421 (12)0.88222 (16)0.67956 (10)0.0464 (3)
H170.25740.85110.69240.056*
C180.37814 (12)0.99643 (16)0.72644 (10)0.0457 (3)
C190.47875 (13)1.04114 (19)0.70700 (11)0.0556 (4)
H190.51521.11770.73730.067*
C200.52369 (13)0.9715 (2)0.64294 (11)0.0586 (4)
H200.59141.00130.63110.070*
C210.3546 (2)0.2628 (2)0.13212 (16)0.0885 (7)
H21A0.27720.24690.13080.133*
H21B0.36360.30140.07490.133*
H21C0.39420.17610.14250.133*
N10.65214 (10)0.53861 (13)0.32982 (8)0.0456 (3)
N20.47802 (10)0.54401 (13)0.34959 (8)0.0465 (3)
N30.48107 (11)0.68926 (14)0.47735 (9)0.0506 (3)
O10.33670 (9)1.06880 (13)0.78932 (7)0.0589 (3)
H10.27771.03390.79530.088*
U11U22U33U12U13U23
C10.0404 (7)0.0465 (8)0.0483 (8)0.0019 (6)0.0084 (6)0.0070 (6)
C20.0550 (9)0.0524 (9)0.0513 (9)−0.0014 (7)0.0063 (7)0.0013 (7)
C30.0577 (10)0.0605 (10)0.0600 (10)−0.0065 (8)−0.0028 (8)0.0048 (8)
C40.0408 (9)0.0817 (13)0.0793 (13)−0.0094 (9)−0.0039 (8)0.0051 (10)
C50.0361 (8)0.0752 (11)0.0742 (11)0.0034 (8)0.0096 (8)0.0066 (9)
C60.0412 (8)0.0482 (8)0.0463 (8)0.0044 (6)0.0095 (6)0.0059 (6)
C70.0411 (7)0.0428 (7)0.0422 (7)0.0013 (6)0.0096 (6)0.0064 (6)
C80.0408 (7)0.0510 (8)0.0399 (7)−0.0002 (6)0.0106 (6)0.0044 (6)
C90.0544 (9)0.0591 (9)0.0527 (9)0.0081 (8)0.0053 (7)0.0004 (7)
C100.0537 (10)0.0908 (14)0.0582 (10)0.0154 (10)−0.0031 (8)−0.0059 (10)
C110.0495 (10)0.1046 (16)0.0673 (12)−0.0103 (11)0.0020 (8)−0.0204 (11)
C120.0654 (12)0.0690 (12)0.0826 (13)−0.0206 (10)0.0119 (10)−0.0095 (10)
C130.0540 (9)0.0538 (9)0.0642 (10)−0.0036 (8)0.0078 (8)0.0086 (8)
C140.0481 (9)0.0665 (10)0.0577 (9)0.0027 (8)0.0193 (7)0.0031 (8)
C150.0444 (8)0.0551 (9)0.0469 (8)0.0026 (7)0.0121 (6)0.0052 (7)
C160.0457 (8)0.0453 (8)0.0497 (8)0.0000 (6)0.0092 (6)0.0052 (6)
C170.0381 (7)0.0524 (8)0.0500 (8)−0.0015 (6)0.0118 (6)0.0073 (7)
C180.0406 (8)0.0560 (8)0.0403 (7)0.0008 (6)0.0077 (6)0.0037 (6)
C190.0467 (8)0.0688 (10)0.0520 (9)−0.0129 (8)0.0116 (7)−0.0071 (8)
C200.0435 (8)0.0778 (11)0.0576 (9)−0.0110 (8)0.0180 (7)−0.0022 (8)
C210.0867 (15)0.0875 (15)0.0824 (14)−0.0259 (12)−0.0044 (12)−0.0115 (12)
N10.0410 (6)0.0489 (7)0.0476 (7)−0.0011 (5)0.0108 (5)0.0019 (5)
N20.0366 (6)0.0509 (7)0.0513 (7)0.0028 (5)0.0068 (5)0.0054 (6)
N30.0474 (7)0.0553 (8)0.0508 (7)0.0083 (6)0.0139 (6)0.0045 (6)
O10.0498 (6)0.0726 (8)0.0577 (7)−0.0102 (5)0.0184 (5)−0.0137 (6)
C1—N11.3326 (19)C11—H110.9300
C1—N21.3789 (19)C12—C131.386 (3)
C1—C21.408 (2)C12—H120.9300
C2—C31.364 (2)C13—H130.9300
C2—H20.9300C14—N31.272 (2)
C3—C41.415 (3)C14—C151.451 (2)
C3—C211.500 (3)C14—H140.9300
C4—C51.350 (3)C15—C201.390 (2)
C4—H40.9300C15—C161.398 (2)
C5—N21.375 (2)C16—C171.374 (2)
C5—H50.9300C16—H160.9300
C6—N31.3818 (19)C17—C181.395 (2)
C6—C71.384 (2)C17—H170.9300
C6—N21.393 (2)C18—O11.3491 (18)
C7—N11.3753 (19)C18—C191.394 (2)
C7—C81.483 (2)C19—C201.372 (2)
C8—C131.386 (2)C19—H190.9300
C8—C91.389 (2)C20—H200.9300
C9—C101.382 (2)C21—H21A0.9600
C9—H90.9300C21—H21B0.9600
C10—C111.372 (3)C21—H21C0.9600
C10—H100.9300O1—H10.8200
C11—C121.371 (3)
N1—C1—N2109.89 (13)C12—C13—C8120.56 (17)
N1—C1—C2130.74 (14)C12—C13—H13119.7
N2—C1—C2119.36 (14)C8—C13—H13119.7
C3—C2—C1119.98 (16)N3—C14—C15124.79 (16)
C3—C2—H2120.0N3—C14—H14117.6
C1—C2—H2120.0C15—C14—H14117.6
C2—C3—C4118.30 (16)C20—C15—C16117.76 (14)
C2—C3—C21121.16 (19)C20—C15—C14118.96 (14)
C4—C3—C21120.50 (18)C16—C15—C14123.28 (15)
C5—C4—C3122.34 (16)C17—C16—C15121.05 (15)
C5—C4—H4118.8C17—C16—H16119.5
C3—C4—H4118.8C15—C16—H16119.5
C4—C5—N2118.64 (17)C16—C17—C18120.29 (14)
C4—C5—H5120.7C16—C17—H17119.9
N2—C5—H5120.7C18—C17—H17119.9
N3—C6—C7138.47 (15)O1—C18—C19117.56 (14)
N3—C6—N2116.61 (13)O1—C18—C17123.18 (13)
C7—C6—N2104.84 (12)C19—C18—C17119.25 (14)
N1—C7—C6110.35 (13)C20—C19—C18119.66 (16)
N1—C7—C8118.76 (12)C20—C19—H19120.2
C6—C7—C8130.65 (13)C18—C19—H19120.2
C13—C8—C9118.18 (15)C19—C20—C15121.97 (15)
C13—C8—C7123.17 (14)C19—C20—H20119.0
C9—C8—C7118.62 (14)C15—C20—H20119.0
C10—C9—C8120.95 (17)C3—C21—H21A109.5
C10—C9—H9119.5C3—C21—H21B109.5
C8—C9—H9119.5H21A—C21—H21B109.5
C11—C10—C9120.06 (18)C3—C21—H21C109.5
C11—C10—H10120.0H21A—C21—H21C109.5
C9—C10—H10120.0H21B—C21—H21C109.5
C12—C11—C10119.85 (18)C1—N1—C7106.85 (12)
C12—C11—H11120.1C5—N2—C1121.28 (14)
C10—C11—H11120.1C5—N2—C6130.54 (14)
C11—C12—C13120.37 (19)C1—N2—C6108.05 (12)
C11—C12—H12119.8C14—N3—C6120.33 (14)
C13—C12—H12119.8C18—O1—H1109.5
D—H···AD—HH···AD···AD—H···A
C13—H13···Cg1i0.932.743.6705 (18)175
O1—H1···N1ii0.821.862.6699 (17)170
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C15C20 ring.

DHA DHHA D A DHA
C13H13Cg1i 0.932.743.6705(18)175
O1H1N1ii 0.821.862.6699(17)170

Symmetry codes: (i) ; (ii) .

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