Literature DB >> 26594486

Redetermined structure of 4,4'-bi-pyridine-1,4-phenyl-enedi-acetic acid (1/1) co-crystal.

Rima Paul1, Sanchay Jyoti Bora1.   

Abstract

The asymmetric unit of the title 1:1 co-crystal, C10H8N2·C10H10O4, consists of one half-mol-ecule each of 4,4'-bi-pyridine and 1,4-phenyl-enedi-acetic acid: the complete mol-ecules are generated by crystallographic inversion centres. The dihedral angle between the -CO2H group and the benzene ring in the diacid is 73.02 (7)°. In the crystal, the components are linked by O-H⋯N hydrogen bonds, generating [1-2-1] chains of alternating amine and carb-oxy-lic acid mol-ecules. The chains are cross-linked by C-H⋯O inter-actions. This structure was previously incorrectly described as a (C10H10N2)(2+)·(C10H8O4)(2-) mol-ecular salt [Jia et al. (2009 ▸). Acta Cryst. E65, o2490-o2490].

Entities:  

Keywords:  co-crystal; crystal structure; hydrogen bonding; supra­molecular inter­action

Year:  2015        PMID: 26594486      PMCID: PMC4647443          DOI: 10.1107/S2056989015017569

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the previous erroneous report of this structure as a mol­ecular salt, see: Jia et al. (2009 ▸). For hydrogen-bonded co-crystals, see: Stahly (2009 ▸); Kavuru et al. (2010 ▸). For pharmaceutical co-crystals, see: Childs et al. (2009 ▸); Walsh et al. (2003 ▸). For a similar structure, see: Chinnakali et al. (1999 ▸).

Experimental

Crystal data

C10H8N2·C10H10O4 M = 350.36 Triclinic, a = 4.5577 (5) Å b = 6.9806 (8) Å c = 13.7995 (15) Å α = 99.508 (6)° β = 94.297 (6)° γ = 97.643 (7)° V = 427.05 (8) Å3 Z = 1 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.20 × 0.17 × 0.13 mm

Data collection

Bruker SMART CCD diffractometer 8581 measured reflections 2405 independent reflections 1876 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.123 S = 1.05 2405 reflections 155 parameters All H-atom parameters refined Δρmax = 0.19 e Å−3 Δρmin = −0.16 e Å−3

Data collection: SMART (Bruker, 2004 ▸); cell refinement: SAINT (Bruker, 2004 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015017569/hb7506sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017569/hb7506Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015017569/hb7506Isup3.doc Click here for additional data file. I . DOI: 10.1107/S2056989015017569/hb7506fig1.tif The mol­ecular structure of (I) showing 50% probability displacement ellipsoids. Click here for additional data file. . DOI: 10.1107/S2056989015017569/hb7506fig2.tif A view of the O—H⋯N, C—H⋯O and C—H⋯π inter­actions observed in the crystal structure of the title compound. CCDC reference: 1423417 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H8N2·C10H10O4V = 427.05 (8) Å3
Mr = 350.36Z = 1
Triclinic, P1F(000) = 184
a = 4.5577 (5) ÅDx = 1.362 Mg m3
b = 6.9806 (8) ÅMo Kα radiation, λ = 0.71073 Å
c = 13.7995 (15) ŵ = 0.10 mm1
α = 99.508 (6)°T = 296 K
β = 94.297 (6)°Rectangular block, colourless
γ = 97.643 (7)°0.20 × 0.17 × 0.13 mm
Bruker SMART CCD diffractometer1876 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
Graphite monochromatorθmax = 29.8°, θmin = 3.0°
phi and ω scansh = −6→6
8581 measured reflectionsk = −9→9
2405 independent reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041All H-atom parameters refined
wR(F2) = 0.123w = 1/[σ2(Fo2) + (0.0605P)2 + 0.0515P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
2405 reflectionsΔρmax = 0.19 e Å3
155 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.061 (11)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.8197 (2)0.45294 (13)−0.18830 (6)0.0541 (3)
C10.7209 (2)0.60720 (15)−0.21279 (8)0.0408 (3)
C20.5619 (3)0.71533 (19)−0.13310 (10)0.0490 (3)
C30.7850 (2)0.86342 (15)−0.06291 (8)0.0400 (3)
C40.9459 (3)0.80852 (16)0.01476 (9)0.0454 (3)
C50.8422 (3)1.05717 (17)−0.07687 (8)0.0446 (3)
O20.7616 (3)0.66207 (15)−0.28973 (7)0.0675 (3)
N10.8832 (2)0.73182 (15)0.32203 (7)0.0476 (3)
C60.8316 (3)0.67172 (18)0.40629 (9)0.0517 (3)
C70.6844 (3)0.77149 (18)0.47798 (9)0.0487 (3)
C80.5796 (2)0.94340 (15)0.46266 (7)0.0376 (2)
C100.7840 (3)0.8964 (2)0.30711 (10)0.0566 (3)
C90.6326 (3)1.00451 (19)0.37423 (9)0.0532 (3)
H90.927 (5)0.382 (3)−0.2421 (15)0.104 (7)*
H30.908 (3)0.676 (2)0.0263 (11)0.061 (4)*
H40.731 (3)1.100 (2)−0.1302 (11)0.055 (4)*
H60.660 (3)0.722 (2)0.5378 (12)0.067 (4)*
H10.462 (4)0.621 (2)−0.0977 (12)0.065 (4)*
H80.822 (4)0.935 (2)0.2459 (13)0.073 (5)*
H70.560 (4)1.122 (3)0.3533 (13)0.081 (5)*
H20.412 (4)0.787 (3)−0.1669 (12)0.071 (5)*
H50.902 (4)0.551 (3)0.4159 (12)0.071 (4)*
U11U22U33U12U13U23
O10.0764 (6)0.0483 (5)0.0463 (5)0.0272 (4)0.0173 (4)0.0141 (4)
C10.0449 (6)0.0370 (5)0.0403 (5)0.0071 (4)0.0035 (4)0.0055 (4)
C20.0434 (6)0.0489 (6)0.0549 (7)0.0115 (5)0.0119 (5)0.0025 (5)
C30.0431 (5)0.0405 (5)0.0396 (5)0.0148 (4)0.0163 (4)0.0046 (4)
C40.0580 (7)0.0363 (5)0.0467 (6)0.0141 (5)0.0146 (5)0.0116 (4)
C50.0545 (7)0.0452 (6)0.0394 (5)0.0184 (5)0.0097 (5)0.0116 (4)
O20.1023 (8)0.0630 (6)0.0502 (5)0.0351 (6)0.0215 (5)0.0232 (4)
N10.0507 (6)0.0478 (5)0.0450 (5)0.0158 (4)0.0075 (4)0.0023 (4)
C60.0643 (8)0.0439 (6)0.0511 (7)0.0221 (6)0.0096 (6)0.0075 (5)
C70.0631 (7)0.0441 (6)0.0443 (6)0.0189 (5)0.0116 (5)0.0117 (5)
C80.0370 (5)0.0374 (5)0.0379 (5)0.0073 (4)0.0026 (4)0.0045 (4)
C100.0714 (9)0.0614 (8)0.0466 (7)0.0285 (6)0.0200 (6)0.0159 (6)
C90.0691 (8)0.0515 (7)0.0490 (6)0.0284 (6)0.0181 (6)0.0166 (5)
O1—C11.3051 (13)C5—H40.972 (14)
O1—H91.02 (2)N1—C61.3264 (16)
C1—O21.2056 (14)N1—C101.3301 (16)
C1—C21.5147 (16)C6—C71.3820 (17)
C2—C31.5108 (17)C6—H50.964 (17)
C2—H10.970 (16)C7—C81.3906 (15)
C2—H21.027 (17)C7—H60.955 (16)
C3—C41.3877 (16)C8—C91.3850 (16)
C3—C51.3908 (15)C8—C8ii1.486 (2)
C4—C5i1.3844 (18)C10—C91.3810 (17)
C4—H30.961 (15)C10—H80.950 (18)
C5—C4i1.3844 (18)C9—H70.998 (19)
C1—O1—H9112.6 (12)C3—C5—H4120.1 (8)
O2—C1—O1123.26 (10)C6—N1—C10117.10 (10)
O2—C1—C2123.39 (11)N1—C6—C7123.47 (11)
O1—C1—C2113.30 (10)N1—C6—H5116.3 (10)
C3—C2—C1109.58 (9)C7—C6—H5120.2 (10)
C3—C2—H1110.0 (9)C6—C7—C8119.66 (11)
C1—C2—H1108.9 (10)C6—C7—H6119.0 (10)
C3—C2—H2109.4 (9)C8—C7—H6121.4 (10)
C1—C2—H2107.7 (9)C9—C8—C7116.53 (10)
H1—C2—H2111.2 (13)C9—C8—C8ii121.59 (12)
C4—C3—C5118.28 (11)C7—C8—C8ii121.88 (12)
C4—C3—C2121.06 (10)N1—C10—C9123.35 (12)
C5—C3—C2120.61 (10)N1—C10—H8115.3 (10)
C5i—C4—C3120.99 (10)C9—C10—H8121.3 (10)
C5i—C4—H3119.3 (9)C10—C9—C8119.89 (11)
C3—C4—H3119.7 (9)C10—C9—H7116.0 (11)
C4i—C5—C3120.73 (11)C8—C9—H7124.1 (11)
C4i—C5—H4119.2 (8)
D—H···AD—HH···AD···AD—H···A
O1—H9···N1iii1.02 (2)1.62 (2)2.6373 (13)176 (2)
C7—H6···O2iv0.954 (16)2.504 (16)3.4196 (16)160.8 (11)
C9—H7···O2v1.00 (2)2.45 (2)3.4205 (18)162.2 (16)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H9N1i 1.02(2)1.62(2)2.6373(13)176(2)
C7H6O2ii 0.954(16)2.504(16)3.4196(16)160.8(11)
C9H7O2iii 1.00(2)2.45(2)3.4205(18)162.2(16)

Symmetry codes: (i) ; (ii) ; (iii) .

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