| Literature DB >> 26594483 |
M Amudha1, P Praveen Kumar2, G Chakkaravarthi3.
Abstract
In the anion of the title mol-ecular salt, C7H7N2 (+)·C7H5O3 (-) (systematic name: 1H-benzimidazol-3-ium 2-hy-droxy-ben-zo-ate), there is an intra-molecular O-H⋯O hydrogen bond that generates an S(6) ring motif. The CO2 group makes a dihedral angle of 5.33 (15)° with its attached ring. In the crystal, the dihedral angle between the benzimidazolium ring and the anion benzene ring is 75.88 (5)°. Two cations bridge two anions via two pairs of N-H⋯O hydrogen bonds, enclosing an R (4) 4(16) ring motif, forming a four-membered centrosymmetric arrangement. These units are linked via C-H⋯O hydrogen bonds, forming chains propagating along the b-axis direction. The chains are linked by C-H⋯π and π-π inter-actions [inter-centroid distances = 3.4156 (7) and 3.8196 (8) Å], forming a three-dimensional structure.Entities:
Keywords: benzimidazolium; crystal structure; hydrogen bonding; salicylate
Year: 2015 PMID: 26594483 PMCID: PMC4647433 DOI: 10.1107/S2056989015017764
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C7H7N2+·C7H5O3− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 8207 reflections |
| θ = 2.7–31.0° | |
| µ = 0.10 mm−1 | |
| β = 94.445 (2)° | Block, colourless |
| 0.34 × 0.30 × 0.25 mm | |
| Bruker Kappa APEXII CCD diffractometer | 4606 independent reflections |
| Radiation source: fine-focus sealed tube | 3020 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 39.4°, θmin = 2.7° |
| Absorption correction: multi-scan ( | |
| 23125 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 4606 reflections | Δρmax = 0.35 e Å−3 |
| 176 parameters | Δρmin = −0.26 e Å−3 |
| 1 restraint | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.025 (3) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.85922 (14) | 0.54826 (15) | 0.16407 (4) | 0.0321 (2) | |
| C2 | 0.94451 (17) | 0.73153 (18) | 0.17277 (5) | 0.0414 (3) | |
| H2 | 1.0347 | 0.7692 | 0.1511 | 0.050* | |
| C3 | 0.8971 (2) | 0.8581 (2) | 0.21304 (5) | 0.0499 (3) | |
| H3 | 0.9554 | 0.9798 | 0.2187 | 0.060* | |
| C4 | 0.76260 (19) | 0.8026 (2) | 0.24480 (5) | 0.0503 (3) | |
| H4 | 0.7296 | 0.8882 | 0.2717 | 0.060* | |
| C5 | 0.67701 (18) | 0.6234 (2) | 0.23729 (5) | 0.0475 (3) | |
| H5 | 0.5866 | 0.5878 | 0.2591 | 0.057* | |
| C6 | 0.72508 (16) | 0.49396 (18) | 0.19710 (4) | 0.0391 (3) | |
| C7 | 0.91104 (17) | 0.41505 (16) | 0.12000 (4) | 0.0375 (2) | |
| C8 | 1.27512 (15) | 1.05724 (17) | 0.05515 (5) | 0.0381 (2) | |
| C9 | 1.3448 (2) | 1.0252 (2) | 0.10764 (6) | 0.0562 (4) | |
| H9 | 1.3355 | 1.1203 | 0.1345 | 0.067* | |
| C10 | 1.4287 (2) | 0.8448 (3) | 0.11783 (7) | 0.0697 (5) | |
| H10 | 1.4781 | 0.8180 | 0.1525 | 0.084* | |
| C11 | 1.4420 (2) | 0.7016 (3) | 0.07804 (8) | 0.0659 (4) | |
| H11 | 1.4981 | 0.5810 | 0.0870 | 0.079* | |
| C12 | 1.37525 (18) | 0.7325 (2) | 0.02618 (6) | 0.0516 (3) | |
| H12 | 1.3854 | 0.6367 | −0.0004 | 0.062* | |
| C13 | 1.29132 (15) | 0.91474 (16) | 0.01517 (5) | 0.0371 (2) | |
| C14 | 1.14314 (16) | 1.17020 (18) | −0.02020 (5) | 0.0409 (3) | |
| H14 | 1.0797 | 1.2524 | −0.0450 | 0.049* | |
| N1 | 1.18155 (14) | 1.21523 (14) | 0.03109 (4) | 0.0398 (2) | |
| H1A | 1.1532 | 1.3239 | 0.0467 | 0.048* | |
| N2 | 1.20728 (13) | 0.99240 (14) | −0.03137 (4) | 0.0400 (2) | |
| H2A | 1.1981 | 0.9351 | −0.0624 | 0.048* | |
| O1 | 1.02203 (14) | 0.47695 (13) | 0.08885 (4) | 0.0521 (3) | |
| O2 | 0.83774 (17) | 0.24546 (14) | 0.11610 (4) | 0.0613 (3) | |
| O3 | 0.63621 (17) | 0.31901 (17) | 0.19135 (4) | 0.0653 (3) | |
| H3A | 0.680 (3) | 0.261 (3) | 0.1658 (7) | 0.098* |
| C1 | 0.0371 (5) | 0.0327 (5) | 0.0266 (4) | 0.0025 (4) | 0.0035 (4) | −0.0024 (4) |
| C2 | 0.0442 (6) | 0.0390 (6) | 0.0411 (6) | −0.0041 (5) | 0.0050 (5) | −0.0034 (4) |
| C3 | 0.0594 (8) | 0.0395 (6) | 0.0497 (7) | −0.0019 (6) | −0.0034 (6) | −0.0137 (5) |
| C4 | 0.0556 (7) | 0.0559 (8) | 0.0389 (6) | 0.0139 (6) | 0.0004 (5) | −0.0169 (5) |
| C5 | 0.0454 (6) | 0.0626 (8) | 0.0357 (6) | 0.0047 (6) | 0.0106 (5) | −0.0078 (5) |
| C6 | 0.0413 (6) | 0.0431 (6) | 0.0334 (5) | −0.0024 (5) | 0.0065 (4) | −0.0031 (4) |
| C7 | 0.0508 (6) | 0.0334 (5) | 0.0290 (5) | 0.0041 (4) | 0.0074 (4) | −0.0012 (4) |
| C8 | 0.0342 (5) | 0.0409 (6) | 0.0400 (6) | −0.0039 (4) | 0.0077 (4) | −0.0050 (4) |
| C9 | 0.0551 (8) | 0.0698 (9) | 0.0426 (7) | −0.0019 (7) | −0.0021 (6) | −0.0076 (6) |
| C10 | 0.0627 (9) | 0.0871 (12) | 0.0566 (9) | 0.0073 (9) | −0.0127 (7) | 0.0111 (8) |
| C11 | 0.0541 (8) | 0.0583 (9) | 0.0838 (11) | 0.0114 (7) | −0.0049 (8) | 0.0125 (8) |
| C12 | 0.0431 (7) | 0.0421 (6) | 0.0701 (9) | 0.0045 (5) | 0.0083 (6) | −0.0051 (6) |
| C13 | 0.0321 (5) | 0.0367 (5) | 0.0433 (6) | −0.0031 (4) | 0.0089 (4) | −0.0040 (4) |
| C14 | 0.0436 (6) | 0.0393 (6) | 0.0409 (6) | −0.0013 (5) | 0.0113 (5) | 0.0021 (4) |
| N1 | 0.0439 (5) | 0.0342 (5) | 0.0426 (5) | −0.0009 (4) | 0.0119 (4) | −0.0064 (4) |
| N2 | 0.0454 (5) | 0.0404 (5) | 0.0354 (5) | −0.0036 (4) | 0.0100 (4) | −0.0066 (4) |
| O1 | 0.0708 (6) | 0.0415 (5) | 0.0480 (5) | 0.0047 (4) | 0.0301 (4) | −0.0018 (4) |
| O2 | 0.0956 (8) | 0.0428 (5) | 0.0487 (5) | −0.0176 (5) | 0.0264 (5) | −0.0168 (4) |
| O3 | 0.0751 (7) | 0.0598 (6) | 0.0656 (7) | −0.0275 (5) | 0.0340 (5) | −0.0142 (5) |
| C1—C2 | 1.3929 (16) | C8—C13 | 1.3913 (16) |
| C1—C6 | 1.3939 (15) | C9—C10 | 1.376 (2) |
| C1—C7 | 1.4889 (14) | C9—H9 | 0.9300 |
| C2—C3 | 1.3803 (17) | C10—C11 | 1.388 (3) |
| C2—H2 | 0.9300 | C10—H10 | 0.9300 |
| C3—C4 | 1.378 (2) | C11—C12 | 1.364 (2) |
| C3—H3 | 0.9300 | C11—H11 | 0.9300 |
| C4—C5 | 1.367 (2) | C12—C13 | 1.3902 (17) |
| C4—H4 | 0.9300 | C12—H12 | 0.9300 |
| C5—C6 | 1.3922 (16) | C13—N2 | 1.3769 (15) |
| C5—H5 | 0.9300 | C14—N2 | 1.3219 (15) |
| C6—O3 | 1.3496 (15) | C14—N1 | 1.3220 (15) |
| C7—O1 | 1.2499 (14) | C14—H14 | 0.9300 |
| C7—O2 | 1.2620 (14) | N1—H1A | 0.8600 |
| C8—N1 | 1.3798 (15) | N2—H2A | 0.8600 |
| C8—C9 | 1.3861 (18) | O3—H3A | 0.834 (9) |
| C2—C1—C6 | 118.68 (10) | C10—C9—H9 | 121.9 |
| C2—C1—C7 | 120.07 (10) | C8—C9—H9 | 121.9 |
| C6—C1—C7 | 121.25 (10) | C9—C10—C11 | 122.17 (14) |
| C3—C2—C1 | 120.96 (12) | C9—C10—H10 | 118.9 |
| C3—C2—H2 | 119.5 | C11—C10—H10 | 118.9 |
| C1—C2—H2 | 119.5 | C12—C11—C10 | 121.97 (14) |
| C4—C3—C2 | 119.41 (12) | C12—C11—H11 | 119.0 |
| C4—C3—H3 | 120.3 | C10—C11—H11 | 119.0 |
| C2—C3—H3 | 120.3 | C11—C12—C13 | 116.52 (13) |
| C5—C4—C3 | 120.90 (11) | C11—C12—H12 | 121.7 |
| C5—C4—H4 | 119.5 | C13—C12—H12 | 121.7 |
| C3—C4—H4 | 119.5 | N2—C13—C12 | 131.86 (11) |
| C4—C5—C6 | 120.08 (12) | N2—C13—C8 | 106.47 (10) |
| C4—C5—H5 | 120.0 | C12—C13—C8 | 121.64 (12) |
| C6—C5—H5 | 120.0 | N2—C14—N1 | 110.72 (11) |
| O3—C6—C5 | 117.70 (11) | N2—C14—H14 | 124.6 |
| O3—C6—C1 | 122.34 (10) | N1—C14—H14 | 124.6 |
| C5—C6—C1 | 119.96 (11) | C14—N1—C8 | 108.01 (10) |
| O1—C7—O2 | 123.80 (10) | C14—N1—H1A | 126.0 |
| O1—C7—C1 | 118.80 (10) | C8—N1—H1A | 126.0 |
| O2—C7—C1 | 117.40 (10) | C14—N2—C13 | 108.22 (10) |
| N1—C8—C9 | 132.02 (11) | C14—N2—H2A | 125.9 |
| N1—C8—C13 | 106.57 (10) | C13—N2—H2A | 125.9 |
| C9—C8—C13 | 121.41 (12) | C6—O3—H3A | 105.2 (16) |
| C10—C9—C8 | 116.28 (14) | ||
| C6—C1—C2—C3 | −0.37 (17) | C13—C8—C9—C10 | −0.6 (2) |
| C7—C1—C2—C3 | 179.30 (11) | C8—C9—C10—C11 | −0.5 (2) |
| C1—C2—C3—C4 | −0.42 (19) | C9—C10—C11—C12 | 1.1 (3) |
| C2—C3—C4—C5 | 0.6 (2) | C10—C11—C12—C13 | −0.6 (2) |
| C3—C4—C5—C6 | −0.1 (2) | C11—C12—C13—N2 | −178.38 (13) |
| C4—C5—C6—O3 | −179.93 (12) | C11—C12—C13—C8 | −0.51 (19) |
| C4—C5—C6—C1 | −0.75 (19) | N1—C8—C13—N2 | 0.10 (12) |
| C2—C1—C6—O3 | −179.91 (12) | C9—C8—C13—N2 | 179.49 (11) |
| C7—C1—C6—O3 | 0.42 (18) | N1—C8—C13—C12 | −178.25 (11) |
| C2—C1—C6—C5 | 0.96 (17) | C9—C8—C13—C12 | 1.14 (18) |
| C7—C1—C6—C5 | −178.71 (11) | N2—C14—N1—C8 | −0.50 (13) |
| C2—C1—C7—O1 | −5.18 (17) | C9—C8—N1—C14 | −179.06 (14) |
| C6—C1—C7—O1 | 174.49 (11) | C13—C8—N1—C14 | 0.23 (13) |
| C2—C1—C7—O2 | 175.54 (12) | N1—C14—N2—C13 | 0.56 (13) |
| C6—C1—C7—O2 | −4.79 (17) | C12—C13—N2—C14 | 177.72 (13) |
| N1—C8—C9—C10 | 178.60 (14) | C8—C13—N2—C14 | −0.40 (12) |
| H··· | ||||
| O3—H3 | 0.83 (1) | 1.78 (1) | 2.5425 (14) | 152 (2) |
| N1—H1 | 0.86 | 1.81 | 2.6139 (13) | 155 |
| N2—H2 | 0.86 | 1.81 | 2.6448 (13) | 164 |
| C14—H14···O1iii | 0.93 | 2.22 | 3.1161 (16) | 161 |
| C3—H3··· | 0.93 | 2.81 | 3.5779 (15) | 141 |
| C10—H10··· | 0.93 | 2.88 | 3.6302 (17) | 139 |
Hydrogen-bond geometry (, )
Cg3 is the centroid of the C1C6 ring.
|
|
| H |
|
|
|---|---|---|---|---|
| O3H3 | 0.83(1) | 1.78(1) | 2.5425(14) | 152(2) |
| N1H1 | 0.86 | 1.81 | 2.6139(13) | 155 |
| N2H2 | 0.86 | 1.81 | 2.6448(13) | 164 |
| C14H14O1iii | 0.93 | 2.22 | 3.1161(16) | 161 |
| C3H3 | 0.93 | 2.81 | 3.5779(15) | 141 |
| C10H10 | 0.93 | 2.88 | 3.6302(17) | 139 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .