| Literature DB >> 26594480 |
Dang-Dang Li1, Xin-Wei Shi2, Qiang-Qiang Lu2, Sheng-Kun Li1.
Abstract
The title compound, C23H35NO2, is an amide derivative of the lactone (+)-sclareolide, and was synthesized from natural sclareol. In the mol-ecular structure, the two six-membered rings (A and B) of the labdane skeleton are trans-fused, and adopt chair conformations. There is an intra-molecular N-H⋯O hydrogen bond present forming an S(7) ring motif. In the crystal, O-H⋯O hydrogen bonds link the mol-ecules into helical chains propagating along the b-axis direction. The chains are linked via C-H⋯π inter-actions, forming a three-dimensional structure.Entities:
Keywords: C—H⋯π interactions; crystal structure; hydrogen bonding; sclareol; sclareolide
Year: 2015 PMID: 26594480 PMCID: PMC4647428 DOI: 10.1107/S2056989015017600
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C23H35NO2 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 2068 reflections |
| θ = 3.1–23.4° | |
| µ = 0.07 mm−1 | |
| β = 96.983 (2)° | Block, colorless |
| 0.22 × 0.20 × 0.18 mm | |
| Bruker SMART APEX CCD diffractometer | 3714 independent reflections |
| Radiation source: fine-focus sealed tube | 3121 reflections with |
| Graphite monochromator | |
| phi and ω scans | θmax = 25.4°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 3714 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3714 reflections | (Δ/σ)max < 0.001 |
| 242 parameters | Δρmax = 0.11 e Å−3 |
| 1 restraint | Δρmin = −0.13 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.4624 (2) | 0.38763 (11) | 0.90592 (12) | 0.0598 (4) | |
| H1O | 0.5362 | 0.4362 | 0.9269 | 0.090* | |
| O2 | 0.3383 (3) | 0.06216 (10) | 1.00512 (14) | 0.0661 (4) | |
| N1 | 0.2698 (2) | 0.22934 (12) | 1.01913 (11) | 0.0413 (4) | |
| H1 | 0.3134 | 0.2876 | 1.0012 | 0.050* | |
| C1 | 0.0998 (3) | 0.23103 (14) | 1.08233 (13) | 0.0373 (4) | |
| C2 | 0.0322 (3) | 0.32517 (14) | 1.11475 (15) | 0.0449 (5) | |
| C3 | −0.1453 (4) | 0.32833 (19) | 1.16972 (18) | 0.0601 (6) | |
| H3 | −0.1947 | 0.3906 | 1.1900 | 0.072* | |
| C4 | −0.2502 (4) | 0.2428 (2) | 1.19504 (17) | 0.0647 (6) | |
| H4 | −0.3692 | 0.2472 | 1.2315 | 0.078* | |
| C5 | −0.1783 (4) | 0.1515 (2) | 1.16623 (18) | 0.0608 (6) | |
| H5 | −0.2466 | 0.0931 | 1.1848 | 0.073* | |
| C6 | −0.0049 (3) | 0.14439 (16) | 1.10965 (17) | 0.0503 (5) | |
| H6 | 0.0419 | 0.0815 | 1.0898 | 0.060* | |
| C7 | 0.3739 (3) | 0.15013 (14) | 0.98281 (15) | 0.0412 (4) | |
| C8 | 0.5396 (3) | 0.17800 (15) | 0.91191 (16) | 0.0448 (5) | |
| H8A | 0.6079 | 0.1167 | 0.8914 | 0.054* | |
| H8B | 0.6485 | 0.2187 | 0.9523 | 0.054* | |
| C9 | 0.4531 (3) | 0.23662 (13) | 0.80977 (13) | 0.0351 (4) | |
| H9 | 0.2994 | 0.2439 | 0.8135 | 0.042* | |
| C10 | 0.5404 (3) | 0.34563 (14) | 0.81224 (16) | 0.0461 (5) | |
| C11 | 0.4370 (4) | 0.40191 (15) | 0.71547 (18) | 0.0601 (6) | |
| H11A | 0.5034 | 0.4677 | 0.7131 | 0.072* | |
| H11B | 0.2869 | 0.4123 | 0.7224 | 0.072* | |
| C12 | 0.4552 (4) | 0.34729 (15) | 0.61180 (17) | 0.0584 (6) | |
| H12A | 0.6046 | 0.3408 | 0.6016 | 0.070* | |
| H12B | 0.3838 | 0.3862 | 0.5532 | 0.070* | |
| C13 | 0.3536 (3) | 0.24265 (16) | 0.61310 (15) | 0.0458 (5) | |
| H13 | 0.2113 | 0.2551 | 0.6342 | 0.055* | |
| C14 | 0.4691 (3) | 0.17743 (14) | 0.70513 (14) | 0.0380 (4) | |
| C15 | 0.7835 (4) | 0.35592 (19) | 0.82392 (19) | 0.0667 (7) | |
| H15A | 0.8226 | 0.4244 | 0.8415 | 0.100* | |
| H15B | 0.8349 | 0.3379 | 0.7584 | 0.100* | |
| H15C | 0.8459 | 0.3120 | 0.8793 | 0.100* | |
| C16 | 0.7032 (3) | 0.15146 (18) | 0.69257 (18) | 0.0558 (5) | |
| H16A | 0.7818 | 0.1407 | 0.7612 | 0.084* | |
| H16B | 0.7663 | 0.2061 | 0.6578 | 0.084* | |
| H16C | 0.7073 | 0.0913 | 0.6508 | 0.084* | |
| C17 | 0.3428 (3) | 0.07858 (15) | 0.71010 (17) | 0.0507 (5) | |
| H17A | 0.4192 | 0.0347 | 0.7628 | 0.061* | |
| H17B | 0.2047 | 0.0936 | 0.7329 | 0.061* | |
| C18 | 0.3081 (5) | 0.02307 (19) | 0.6044 (2) | 0.0782 (8) | |
| H18A | 0.4451 | 0.0016 | 0.5847 | 0.094* | |
| H18B | 0.2220 | −0.0366 | 0.6116 | 0.094* | |
| C19 | 0.1974 (4) | 0.0897 (2) | 0.5183 (2) | 0.0848 (9) | |
| H19A | 0.0535 | 0.1032 | 0.5343 | 0.102* | |
| H19B | 0.1858 | 0.0530 | 0.4518 | 0.102* | |
| C20 | 0.3085 (4) | 0.1906 (2) | 0.50341 (17) | 0.0658 (6) | |
| C21 | 0.5087 (5) | 0.1731 (3) | 0.4470 (2) | 0.0896 (9) | |
| H21A | 0.6003 | 0.1248 | 0.4861 | 0.134* | |
| H21B | 0.5843 | 0.2356 | 0.4431 | 0.134* | |
| H21C | 0.4663 | 0.1482 | 0.3767 | 0.134* | |
| C22 | 0.1549 (6) | 0.2562 (3) | 0.4303 (2) | 0.1163 (13) | |
| H22A | 0.1083 | 0.2197 | 0.3664 | 0.174* | |
| H22B | 0.2268 | 0.3167 | 0.4131 | 0.174* | |
| H22C | 0.0333 | 0.2732 | 0.4655 | 0.174* | |
| C23 | 0.1454 (4) | 0.42079 (16) | 1.0915 (2) | 0.0669 (7) | |
| H23A | 0.0722 | 0.4774 | 1.1175 | 0.100* | |
| H23B | 0.1467 | 0.4273 | 1.0164 | 0.100* | |
| H23C | 0.2897 | 0.4188 | 1.1259 | 0.100* |
| O1 | 0.0856 (11) | 0.0399 (8) | 0.0583 (9) | −0.0191 (7) | 0.0266 (8) | −0.0166 (7) |
| O2 | 0.0854 (11) | 0.0327 (8) | 0.0842 (11) | 0.0119 (8) | 0.0266 (9) | 0.0162 (8) |
| N1 | 0.0510 (9) | 0.0274 (8) | 0.0467 (9) | −0.0027 (7) | 0.0110 (7) | 0.0035 (7) |
| C1 | 0.0414 (9) | 0.0384 (10) | 0.0314 (9) | −0.0004 (9) | 0.0012 (7) | 0.0030 (8) |
| C2 | 0.0536 (12) | 0.0420 (11) | 0.0392 (11) | 0.0005 (9) | 0.0056 (9) | −0.0023 (8) |
| C3 | 0.0650 (14) | 0.0676 (16) | 0.0497 (13) | 0.0086 (13) | 0.0145 (11) | −0.0088 (11) |
| C4 | 0.0582 (13) | 0.092 (2) | 0.0467 (13) | 0.0002 (14) | 0.0160 (10) | 0.0072 (13) |
| C5 | 0.0603 (13) | 0.0724 (16) | 0.0495 (13) | −0.0172 (12) | 0.0059 (11) | 0.0188 (12) |
| C6 | 0.0605 (13) | 0.0429 (11) | 0.0473 (12) | −0.0045 (10) | 0.0051 (10) | 0.0092 (9) |
| C7 | 0.0497 (11) | 0.0344 (11) | 0.0379 (10) | 0.0053 (9) | −0.0009 (8) | 0.0056 (8) |
| C8 | 0.0452 (11) | 0.0438 (11) | 0.0449 (11) | 0.0107 (9) | 0.0044 (8) | −0.0001 (9) |
| C9 | 0.0365 (9) | 0.0314 (9) | 0.0383 (10) | 0.0025 (8) | 0.0075 (7) | 0.0001 (8) |
| C10 | 0.0594 (12) | 0.0352 (11) | 0.0459 (12) | −0.0093 (9) | 0.0151 (9) | −0.0071 (8) |
| C11 | 0.0855 (16) | 0.0337 (12) | 0.0642 (15) | −0.0013 (11) | 0.0215 (12) | 0.0091 (10) |
| C12 | 0.0787 (15) | 0.0495 (13) | 0.0489 (13) | 0.0011 (11) | 0.0152 (11) | 0.0159 (10) |
| C13 | 0.0433 (10) | 0.0532 (12) | 0.0415 (11) | 0.0001 (9) | 0.0079 (8) | 0.0025 (9) |
| C14 | 0.0395 (10) | 0.0366 (10) | 0.0397 (10) | −0.0017 (8) | 0.0116 (8) | −0.0019 (7) |
| C15 | 0.0656 (14) | 0.0696 (16) | 0.0664 (15) | −0.0320 (12) | 0.0143 (11) | −0.0156 (12) |
| C16 | 0.0493 (12) | 0.0572 (13) | 0.0639 (14) | 0.0062 (10) | 0.0193 (10) | −0.0053 (11) |
| C17 | 0.0610 (13) | 0.0417 (12) | 0.0520 (13) | −0.0102 (10) | 0.0172 (10) | −0.0090 (9) |
| C18 | 0.104 (2) | 0.0623 (17) | 0.0738 (19) | −0.0359 (15) | 0.0339 (16) | −0.0293 (13) |
| C19 | 0.0888 (19) | 0.111 (2) | 0.0561 (17) | −0.0440 (17) | 0.0149 (14) | −0.0369 (16) |
| C20 | 0.0702 (14) | 0.0887 (18) | 0.0385 (12) | −0.0182 (13) | 0.0066 (11) | −0.0055 (11) |
| C21 | 0.106 (2) | 0.117 (2) | 0.0529 (16) | −0.0345 (18) | 0.0368 (15) | −0.0212 (15) |
| C22 | 0.117 (3) | 0.166 (4) | 0.0575 (17) | −0.009 (2) | −0.0239 (17) | 0.0145 (19) |
| C23 | 0.0797 (16) | 0.0373 (12) | 0.0870 (18) | −0.0010 (11) | 0.0236 (14) | −0.0140 (11) |
| O1—C10 | 1.453 (2) | C13—C20 | 1.551 (3) |
| O1—H1O | 0.8200 | C13—C14 | 1.562 (3) |
| O2—C7 | 1.228 (2) | C13—H13 | 0.9800 |
| N1—C7 | 1.349 (2) | C14—C17 | 1.539 (3) |
| N1—C1 | 1.415 (2) | C14—C16 | 1.541 (3) |
| N1—H1 | 0.8600 | C15—H15A | 0.9600 |
| C1—C6 | 1.390 (3) | C15—H15B | 0.9600 |
| C1—C2 | 1.398 (3) | C15—H15C | 0.9600 |
| C2—C3 | 1.390 (3) | C16—H16A | 0.9600 |
| C2—C23 | 1.502 (3) | C16—H16B | 0.9600 |
| C3—C4 | 1.371 (3) | C16—H16C | 0.9600 |
| C3—H3 | 0.9300 | C17—C18 | 1.524 (3) |
| C4—C5 | 1.358 (4) | C17—H17A | 0.9700 |
| C4—H4 | 0.9300 | C17—H17B | 0.9700 |
| C5—C6 | 1.382 (3) | C18—C19 | 1.510 (4) |
| C5—H5 | 0.9300 | C18—H18A | 0.9700 |
| C6—H6 | 0.9300 | C18—H18B | 0.9700 |
| C7—C8 | 1.506 (3) | C19—C20 | 1.533 (4) |
| C8—C9 | 1.554 (3) | C19—H19A | 0.9700 |
| C8—H8A | 0.9700 | C19—H19B | 0.9700 |
| C8—H8B | 0.9700 | C20—C22 | 1.529 (4) |
| C9—C10 | 1.546 (3) | C20—C21 | 1.542 (4) |
| C9—C14 | 1.558 (2) | C21—H21A | 0.9600 |
| C9—H9 | 0.9800 | C21—H21B | 0.9600 |
| C10—C11 | 1.516 (3) | C21—H21C | 0.9600 |
| C10—C15 | 1.527 (3) | C22—H22A | 0.9600 |
| C11—C12 | 1.520 (3) | C22—H22B | 0.9600 |
| C11—H11A | 0.9700 | C22—H22C | 0.9600 |
| C11—H11B | 0.9700 | C23—H23A | 0.9600 |
| C12—C13 | 1.530 (3) | C23—H23B | 0.9600 |
| C12—H12A | 0.9700 | C23—H23C | 0.9600 |
| C12—H12B | 0.9700 | ||
| C10—O1—H1O | 109.5 | C17—C14—C16 | 108.65 (16) |
| C7—N1—C1 | 129.73 (16) | C17—C14—C9 | 107.87 (14) |
| C7—N1—H1 | 115.1 | C16—C14—C9 | 111.29 (15) |
| C1—N1—H1 | 115.1 | C17—C14—C13 | 107.85 (15) |
| C6—C1—C2 | 119.63 (17) | C16—C14—C13 | 114.27 (15) |
| C6—C1—N1 | 122.93 (18) | C9—C14—C13 | 106.69 (14) |
| C2—C1—N1 | 117.40 (16) | C10—C15—H15A | 109.5 |
| C3—C2—C1 | 117.90 (19) | C10—C15—H15B | 109.5 |
| C3—C2—C23 | 120.25 (19) | H15A—C15—H15B | 109.5 |
| C1—C2—C23 | 121.85 (18) | C10—C15—H15C | 109.5 |
| C4—C3—C2 | 122.2 (2) | H15A—C15—H15C | 109.5 |
| C4—C3—H3 | 118.9 | H15B—C15—H15C | 109.5 |
| C2—C3—H3 | 118.9 | C14—C16—H16A | 109.5 |
| C5—C4—C3 | 119.3 (2) | C14—C16—H16B | 109.5 |
| C5—C4—H4 | 120.4 | H16A—C16—H16B | 109.5 |
| C3—C4—H4 | 120.4 | C14—C16—H16C | 109.5 |
| C4—C5—C6 | 120.8 (2) | H16A—C16—H16C | 109.5 |
| C4—C5—H5 | 119.6 | H16B—C16—H16C | 109.5 |
| C6—C5—H5 | 119.6 | C18—C17—C14 | 113.26 (17) |
| C5—C6—C1 | 120.2 (2) | C18—C17—H17A | 108.9 |
| C5—C6—H6 | 119.9 | C14—C17—H17A | 108.9 |
| C1—C6—H6 | 119.9 | C18—C17—H17B | 108.9 |
| O2—C7—N1 | 123.46 (17) | C14—C17—H17B | 108.9 |
| O2—C7—C8 | 122.06 (17) | H17A—C17—H17B | 107.7 |
| N1—C7—C8 | 114.48 (16) | C19—C18—C17 | 111.1 (2) |
| C7—C8—C9 | 115.10 (15) | C19—C18—H18A | 109.4 |
| C7—C8—H8A | 108.5 | C17—C18—H18A | 109.4 |
| C9—C8—H8A | 108.5 | C19—C18—H18B | 109.4 |
| C7—C8—H8B | 108.5 | C17—C18—H18B | 109.4 |
| C9—C8—H8B | 108.5 | H18A—C18—H18B | 108.0 |
| H8A—C8—H8B | 107.5 | C18—C19—C20 | 115.0 (2) |
| C10—C9—C8 | 111.30 (15) | C18—C19—H19A | 108.5 |
| C10—C9—C14 | 115.40 (14) | C20—C19—H19A | 108.5 |
| C8—C9—C14 | 114.09 (15) | C18—C19—H19B | 108.5 |
| C10—C9—H9 | 104.9 | C20—C19—H19B | 108.5 |
| C8—C9—H9 | 104.9 | H19A—C19—H19B | 107.5 |
| C14—C9—H9 | 104.9 | C22—C20—C19 | 107.9 (2) |
| O1—C10—C11 | 108.73 (17) | C22—C20—C21 | 107.2 (2) |
| O1—C10—C15 | 108.72 (17) | C19—C20—C21 | 109.7 (2) |
| C11—C10—C15 | 111.21 (18) | C22—C20—C13 | 109.0 (2) |
| O1—C10—C9 | 102.74 (14) | C19—C20—C13 | 108.33 (18) |
| C11—C10—C9 | 109.11 (16) | C21—C20—C13 | 114.47 (19) |
| C15—C10—C9 | 115.82 (17) | C20—C21—H21A | 109.5 |
| C10—C11—C12 | 113.45 (17) | C20—C21—H21B | 109.5 |
| C10—C11—H11A | 108.9 | H21A—C21—H21B | 109.5 |
| C12—C11—H11A | 108.9 | C20—C21—H21C | 109.5 |
| C10—C11—H11B | 108.9 | H21A—C21—H21C | 109.5 |
| C12—C11—H11B | 108.9 | H21B—C21—H21C | 109.5 |
| H11A—C11—H11B | 107.7 | C20—C22—H22A | 109.5 |
| C11—C12—C13 | 110.33 (17) | C20—C22—H22B | 109.5 |
| C11—C12—H12A | 109.6 | H22A—C22—H22B | 109.5 |
| C13—C12—H12A | 109.6 | C20—C22—H22C | 109.5 |
| C11—C12—H12B | 109.6 | H22A—C22—H22C | 109.5 |
| C13—C12—H12B | 109.6 | H22B—C22—H22C | 109.5 |
| H12A—C12—H12B | 108.1 | C2—C23—H23A | 109.5 |
| C12—C13—C20 | 115.19 (17) | C2—C23—H23B | 109.5 |
| C12—C13—C14 | 110.69 (16) | H23A—C23—H23B | 109.5 |
| C20—C13—C14 | 116.36 (18) | C2—C23—H23C | 109.5 |
| C12—C13—H13 | 104.3 | H23A—C23—H23C | 109.5 |
| C20—C13—H13 | 104.3 | H23B—C23—H23C | 109.5 |
| C14—C13—H13 | 104.3 | ||
| C7—N1—C1—C6 | −6.7 (3) | C11—C12—C13—C20 | 164.77 (19) |
| C7—N1—C1—C2 | 175.54 (18) | C11—C12—C13—C14 | −60.6 (2) |
| C6—C1—C2—C3 | −2.8 (3) | C10—C9—C14—C17 | −170.84 (16) |
| N1—C1—C2—C3 | 175.04 (18) | C8—C9—C14—C17 | 58.41 (19) |
| C6—C1—C2—C23 | 177.3 (2) | C10—C9—C14—C16 | 70.1 (2) |
| N1—C1—C2—C23 | −4.9 (3) | C8—C9—C14—C16 | −60.7 (2) |
| C1—C2—C3—C4 | 1.8 (3) | C10—C9—C14—C13 | −55.19 (19) |
| C23—C2—C3—C4 | −178.3 (2) | C8—C9—C14—C13 | 174.06 (14) |
| C2—C3—C4—C5 | 0.4 (3) | C12—C13—C14—C17 | 173.35 (16) |
| C3—C4—C5—C6 | −1.7 (3) | C20—C13—C14—C17 | −52.6 (2) |
| C4—C5—C6—C1 | 0.6 (3) | C12—C13—C14—C16 | −65.7 (2) |
| C2—C1—C6—C5 | 1.7 (3) | C20—C13—C14—C16 | 68.3 (2) |
| N1—C1—C6—C5 | −176.07 (18) | C12—C13—C14—C9 | 57.69 (19) |
| C1—N1—C7—O2 | −3.4 (3) | C20—C13—C14—C9 | −168.28 (15) |
| C1—N1—C7—C8 | 176.65 (17) | C16—C14—C17—C18 | −70.6 (2) |
| O2—C7—C8—C9 | 120.4 (2) | C9—C14—C17—C18 | 168.6 (2) |
| N1—C7—C8—C9 | −59.7 (2) | C13—C14—C17—C18 | 53.7 (2) |
| C7—C8—C9—C10 | 113.33 (18) | C14—C17—C18—C19 | −56.3 (3) |
| C7—C8—C9—C14 | −113.93 (17) | C17—C18—C19—C20 | 55.1 (3) |
| C8—C9—C10—O1 | −60.06 (18) | C18—C19—C20—C22 | −168.8 (2) |
| C14—C9—C10—O1 | 167.86 (14) | C18—C19—C20—C21 | 74.7 (3) |
| C8—C9—C10—C11 | −175.33 (16) | C18—C19—C20—C13 | −51.0 (3) |
| C14—C9—C10—C11 | 52.6 (2) | C12—C13—C20—C22 | −60.1 (3) |
| C8—C9—C10—C15 | 58.3 (2) | C14—C13—C20—C22 | 168.0 (2) |
| C14—C9—C10—C15 | −73.8 (2) | C12—C13—C20—C19 | −177.2 (2) |
| O1—C10—C11—C12 | −163.68 (17) | C14—C13—C20—C19 | 50.8 (3) |
| C15—C10—C11—C12 | 76.6 (2) | C12—C13—C20—C21 | 60.0 (3) |
| C9—C10—C11—C12 | −52.3 (2) | C14—C13—C20—C21 | −72.0 (3) |
| C10—C11—C12—C13 | 58.1 (3) |
| H··· | ||||
| N1—H1···O1 | 0.86 | 2.09 | 2.894 (2) | 155 |
| O1—H1 | 0.82 | 2.00 | 2.8054 (19) | 168 |
| C8—H8 | 0.97 | 2.79 | 3.632 (2) | 146 |
| C22—H22 | 0.96 | 2.98 | 3.808 (3) | 145 |
Hydrogen-bond geometry (, )
Cg is the centroid of benzene ring C1C6.
|
|
| H |
|
|
|---|---|---|---|---|
| N1H1O1 | 0.86 | 2.09 | 2.894(2) | 155 |
| O1H1 | 0.82 | 2.00 | 2.8054(19) | 168 |
| C8H8 | 0.97 | 2.79 | 3.632(2) | 146 |
| C22H22 | 0.96 | 2.98 | 3.808(3) | 145 |
Symmetry codes: (i) ; (ii) ; (iii) .