Literature DB >> 26594471

Crystal structure of 4-[(E)-(2-carbamo-thio-ylhydrazinyl-idene)meth-yl]benzoic acid.

Muhammad Nawaz Tahir1, Muhammad Anwar-Ul-Haq1, Muhammad Aziz Choudhary2.   

Abstract

The title compound, C9H9N3O2S, is close to planar with an r.m.s. deviation of 0.032 Å. An intra-molecular N-H⋯N hydrogen bond closes an S(5) ring. In the crystal, mol-ecules are connected into inversion dimers of the R 2 (2)(8) type by pairs of O-H⋯O inter-actions. The dimers are further connected by pairs of N-H⋯S inter-actions, which also complete R 2 (2)(8) ring motifs. The chains of dimers are cross-linked by N-H⋯O bonds and hence R 4 (2)(28) rings are completed. Taken together, these inter-actions lead to infinite sheets propagating in the (122) plane.

Entities:  

Keywords:  crystal structure; hydrazinecarbo­thio­amide; hydrogen bonding

Year:  2015        PMID: 26594471      PMCID: PMC4647436          DOI: 10.1107/S2056989015017594

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For related structures, see: Carballo et al. (2014 ▸); Wu et al., (2009 ▸).

Experimental

Crystal data

C9H9N3O2S M = 223.25 Triclinic, a = 4.7454 (5) Å b = 8.5691 (10) Å c = 13.3886 (15) Å α = 81.386 (6)° β = 82.878 (6)° γ = 79.416 (6)° V = 526.52 (10) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 296 K 0.40 × 0.22 × 0.16 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▸) T min = 0.895, T max = 0.958 5971 measured reflections 2286 independent reflections 1566 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.146 S = 1.06 2286 reflections 143 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.55 e Å−3 Δρmin = −0.23 e Å−3

Data collection: APEX2 (Bruker, 2007 ▸); cell refinement: SAINT (Bruker, 2007 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014/6 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015017594/hb7508sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017594/hb7508Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015017594/hb7508Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015017594/hb7508fig1.tif View of the title compound with displacement ellipsoids drawn at the 50% probability level. The dotted line indicate the intra­molecular H-inter­action. Click here for additional data file. PLATON . DOI: 10.1107/S2056989015017594/hb7508fig2.tif The partial packing (PLATON; Spek, 2009), which shows that mol­ecules are dimerized and form a two-dimensional network with various ring motifs. CCDC reference: 1426244 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H9N3O2SZ = 2
Mr = 223.25F(000) = 232
Triclinic, P1Dx = 1.408 Mg m3
a = 4.7454 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.5691 (10) ÅCell parameters from 1566 reflections
c = 13.3886 (15) Åθ = 1.6–27.0°
α = 81.386 (6)°µ = 0.29 mm1
β = 82.878 (6)°T = 296 K
γ = 79.416 (6)°Needle, colourless
V = 526.52 (10) Å30.40 × 0.22 × 0.16 mm
Bruker Kappa APEXII CCD diffractometer2286 independent reflections
Radiation source: fine-focus sealed tube1566 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
Detector resolution: 7.70 pixels mm-1θmax = 27.0°, θmin = 1.6°
ω scansh = −5→6
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −10→10
Tmin = 0.895, Tmax = 0.958l = −17→17
5971 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.146H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0687P)2 + 0.105P] where P = (Fo2 + 2Fc2)/3
2286 reflections(Δ/σ)max < 0.001
143 parametersΔρmax = 0.55 e Å3
3 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S11.16213 (14)−0.24283 (8)0.07250 (5)0.0516 (3)
O1−0.7098 (4)0.3266 (3)0.50791 (14)0.0659 (6)
H1−0.83890.37910.54170.099*
O2−0.8294 (4)0.5276 (2)0.38826 (14)0.0598 (6)
N10.4804 (4)0.0209 (2)0.19255 (16)0.0417 (5)
N20.7068 (4)−0.0327 (2)0.12477 (16)0.0426 (5)
H20.73070.01940.06510.051*
N30.8427 (6)−0.2352 (3)0.24762 (19)0.0635 (7)
H3A0.951 (6)−0.321 (3)0.270 (2)0.095*
H3B0.702 (5)−0.199 (4)0.289 (2)0.095*
C1−0.6710 (5)0.4042 (3)0.41755 (19)0.0443 (6)
C2−0.4179 (5)0.3333 (3)0.35245 (19)0.0409 (6)
C3−0.3616 (5)0.4082 (3)0.2550 (2)0.0426 (6)
H3−0.48300.50050.23080.051*
C4−0.1243 (5)0.3456 (3)0.1935 (2)0.0434 (6)
H4−0.08580.39690.12820.052*
C50.0572 (4)0.2066 (3)0.22859 (19)0.0380 (6)
C6−0.0038 (5)0.1310 (3)0.3255 (2)0.0488 (7)
H60.11460.03720.34930.059*
C7−0.2402 (5)0.1942 (3)0.3875 (2)0.0495 (7)
H7−0.27950.14300.45270.059*
C80.3065 (5)0.1441 (3)0.16108 (19)0.0406 (6)
H80.33700.19490.09520.049*
C90.8922 (5)−0.1683 (3)0.15277 (19)0.0415 (6)
U11U22U33U12U13U23
S10.0457 (4)0.0493 (4)0.0491 (4)0.0093 (3)0.0097 (3)−0.0059 (3)
O10.0503 (11)0.0888 (16)0.0404 (11)0.0235 (10)0.0101 (8)−0.0059 (11)
O20.0497 (11)0.0690 (13)0.0463 (11)0.0202 (10)0.0079 (8)−0.0087 (10)
N10.0345 (10)0.0446 (12)0.0429 (12)−0.0032 (9)0.0093 (9)−0.0108 (10)
N20.0366 (10)0.0457 (12)0.0378 (12)0.0032 (9)0.0092 (8)−0.0041 (9)
N30.0702 (17)0.0557 (16)0.0458 (15)0.0152 (12)0.0145 (12)0.0054 (12)
C10.0340 (13)0.0574 (17)0.0390 (15)0.0029 (12)−0.0009 (10)−0.0133 (13)
C20.0306 (12)0.0519 (15)0.0393 (14)0.0012 (10)0.0003 (10)−0.0160 (12)
C30.0330 (12)0.0452 (14)0.0461 (15)0.0034 (10)0.0014 (10)−0.0115 (12)
C40.0381 (13)0.0483 (15)0.0402 (14)−0.0027 (11)0.0046 (10)−0.0069 (12)
C50.0273 (11)0.0465 (14)0.0407 (14)−0.0036 (10)0.0014 (9)−0.0143 (11)
C60.0382 (13)0.0536 (16)0.0466 (16)0.0088 (11)0.0018 (11)−0.0060 (13)
C70.0419 (14)0.0632 (18)0.0359 (14)0.0025 (12)0.0048 (11)−0.0039 (13)
C80.0324 (12)0.0458 (14)0.0406 (14)0.0007 (10)0.0023 (10)−0.0094 (12)
C90.0382 (13)0.0395 (14)0.0444 (15)−0.0050 (10)−0.0033 (10)−0.0007 (12)
S1—C91.664 (2)C2—C31.383 (4)
O1—C11.299 (3)C2—C71.383 (3)
O1—H10.8200C3—C41.383 (3)
O2—C11.222 (3)C3—H30.9300
N1—C81.268 (3)C4—C51.392 (3)
N1—N21.375 (3)C4—H40.9300
N2—C91.357 (3)C5—C61.383 (4)
N2—H20.8600C5—C81.466 (3)
N3—C91.325 (3)C6—C71.386 (3)
N3—H3A0.853 (10)C6—H60.9300
N3—H3B0.851 (10)C7—H70.9300
C1—C21.484 (3)C8—H80.9300
C1—O1—H1109.5C3—C4—H4119.7
C8—N1—N2116.9 (2)C5—C4—H4119.7
C9—N2—N1119.5 (2)C6—C5—C4119.1 (2)
C9—N2—H2120.3C6—C5—C8122.0 (2)
N1—N2—H2120.3C4—C5—C8118.8 (2)
C9—N3—H3A120 (2)C5—C6—C7120.4 (2)
C9—N3—H3B124 (2)C5—C6—H6119.8
H3A—N3—H3B116 (3)C7—C6—H6119.8
O2—C1—O1122.6 (2)C2—C7—C6120.1 (2)
O2—C1—C2122.2 (2)C2—C7—H7119.9
O1—C1—C2115.2 (2)C6—C7—H7119.9
C3—C2—C7119.9 (2)N1—C8—C5120.0 (2)
C3—C2—C1118.9 (2)N1—C8—H8120.0
C7—C2—C1121.2 (2)C5—C8—H8120.0
C4—C3—C2119.9 (2)N3—C9—N2115.3 (2)
C4—C3—H3120.0N3—C9—S1123.1 (2)
C2—C3—H3120.0N2—C9—S1121.62 (19)
C3—C4—C5120.5 (2)
C8—N1—N2—C9−177.0 (2)C4—C5—C6—C7−0.9 (4)
O2—C1—C2—C3−0.8 (4)C8—C5—C6—C7179.5 (2)
O1—C1—C2—C3179.8 (2)C3—C2—C7—C60.9 (4)
O2—C1—C2—C7179.5 (3)C1—C2—C7—C6−179.5 (2)
O1—C1—C2—C70.1 (4)C5—C6—C7—C20.3 (4)
C7—C2—C3—C4−1.3 (4)N2—N1—C8—C5179.0 (2)
C1—C2—C3—C4179.0 (2)C6—C5—C8—N1−2.9 (4)
C2—C3—C4—C50.7 (4)C4—C5—C8—N1177.6 (2)
C3—C4—C5—C60.5 (4)N1—N2—C9—N3−2.7 (4)
C3—C4—C5—C8180.0 (2)N1—N2—C9—S1177.48 (17)
D—H···AD—HH···AD···AD—H···A
N3—H3B···N10.86 (3)2.28 (3)2.600 (3)102 (2)
O1—H1···O2i0.821.842.653 (2)170
N2—H2···S1ii0.862.533.347 (2)160
N3—H3A···O2iii0.85 (1)2.14 (2)2.918 (3)152 (3)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N3H3BN10.86(3)2.28(3)2.600(3)102(2)
O1H1O2i 0.821.842.653(2)170
N2H2S1ii 0.862.533.347(2)160
N3H3AO2iii 0.85(1)2.14(2)2.918(3)152(3)

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Cyano-benzaldehyde thio-semi-carbazone.

Authors:  De-Hong Wu; You-Hong Zhang; Zhu-Feng Li; Yong-Hua Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-13

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.