Literature DB >> 26594469

Crystal structure of 1,5-diethyl-3',5'-di-phenyl-1,5-di-hydro-3'H-spiro-[pyra-zolo[3,4-d]pyrimidine-4,2'-[1,3,4]thia-diazole].

Mohammed El Fal1, Youssef Ramli2, El Mokhtar Essassi1, Mohamed Saadi3, Lahcen El Ammari3.   

Abstract

In the title compound, C22H22N6S, the pyrazolo-[3,4-d]pyrimidine rings system is almost planar, with the r.m.s. deviation for the fitted atoms being 0.011 Å. The two phenyl groups linked to the thia-diazole ring are nearly perpendicular to the fused-ring system as indicated by the dihedral angles of 86.93 (10) and 83.35 (11)°. However, the phenyl rings are almost coplanar with the thia-diazole ring (r.m.s. deviation = 0.015 Å), forming dihedral angles of 10.44 (11) and 10.06 (12)°. In the crystal, mol-ecules are connected into a supra-molecular layer in the ac plane via C-H⋯π inter-actions.

Entities:  

Keywords:  crystal structure; pyrazolo­[3,4-d]pyrimidine; thia­diazole

Year:  2015        PMID: 26594469      PMCID: PMC4647392          DOI: 10.1107/S2056989015017405

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For biological properties of pyrazolo­[3,4-d]pyrimidine derivatives, see: Chern et al. (2004 ▸); Schenone et al. (2009 ▸); Dinér et al. (2012 ▸); Taliani et al. (2010 ▸); Trivedi et al. (2012 ▸). For related structures, see: El Fal et al. (2014 ▸, 2015 ▸); Ahoya et al. (2011 ▸); Anothane et al. (2012 ▸).

Experimental

Crystal data

C22H22N6S M = 402.51 Orthorhombic, a = 14.501 (5) Å b = 22.898 (5) Å c = 12.468 (4) Å V = 4140 (2) Å3 Z = 8 Mo Kα radiation μ = 0.18 mm−1 T = 296 K 0.37 × 0.34 × 0.29 mm

Data collection

Bruker X8 APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.589, T max = 0.746 25025 measured reflections 4224 independent reflections 2566 reflections with I > 2σ(I) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.138 S = 1.00 4224 reflections 262 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.30 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT-Plus (Bruker, 2009 ▸); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: SHELXL2013. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015017405/tk5387sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017405/tk5387Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015017405/tk5387Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015017405/tk5387fig1.tif Mol­ecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are represented as small circles. CCDC reference: 1425539 Additional supporting information: crystallographic information; 3D view; checkCIF report
C22H22N6SDx = 1.292 Mg m3
Mr = 402.51Melting point: 468 K
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
a = 14.501 (5) ÅCell parameters from 4224 reflections
b = 22.898 (5) Åθ = 2.3–26.4°
c = 12.468 (4) ŵ = 0.18 mm1
V = 4140 (2) Å3T = 296 K
Z = 8Block, yellow
F(000) = 16960.37 × 0.34 × 0.29 mm
Bruker X8 APEX diffractometer4224 independent reflections
Radiation source: fine-focus sealed tube2566 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.079
φ and ω scansθmax = 26.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −18→17
Tmin = 0.589, Tmax = 0.746k = −24→28
25025 measured reflectionsl = −15→15
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.138w = 1/[σ2(Fo2) + (0.0625P)2 + 0.732P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4224 reflectionsΔρmax = 0.31 e Å3
262 parametersΔρmin = −0.30 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.48041 (15)0.16398 (10)0.52664 (19)0.0383 (5)
C20.54607 (15)0.07863 (9)0.63901 (19)0.0363 (5)
C30.49773 (15)0.04386 (10)0.72025 (19)0.0373 (5)
C40.41299 (17)0.04978 (11)0.7732 (2)0.0511 (7)
H40.37270.08090.76310.061*
C50.53365 (15)−0.00752 (10)0.75801 (19)0.0377 (5)
C60.65913 (16)−0.00200 (10)0.6605 (2)0.0413 (6)
H60.7162−0.01640.63920.050*
C70.69620 (18)0.07699 (12)0.5361 (2)0.0554 (7)
H7A0.75600.08140.57000.066*
H7B0.67330.11580.51990.066*
C80.7081 (3)0.04447 (17)0.4342 (3)0.1022 (13)
H8A0.74980.06540.38840.153*
H8B0.64950.04060.39920.153*
H8C0.73270.00640.44920.153*
C90.4750 (2)−0.08616 (13)0.8837 (3)0.0726 (9)
H9A0.4554−0.08140.95760.087*
H9B0.5377−0.10090.88410.087*
C100.4139 (3)−0.12911 (14)0.8295 (3)0.0962 (13)
H10A0.4166−0.16570.86680.144*
H10B0.4340−0.13450.75680.144*
H10C0.3517−0.11480.82980.144*
C110.61067 (15)0.15818 (10)0.76316 (19)0.0383 (6)
C120.66082 (17)0.11905 (11)0.8257 (2)0.0478 (6)
H120.66320.07970.80720.057*
C130.70698 (17)0.13906 (13)0.9156 (2)0.0538 (7)
H130.74040.11280.95710.065*
C140.70444 (18)0.19696 (13)0.9449 (2)0.0576 (8)
H140.73570.20991.00540.069*
C150.65481 (18)0.23514 (13)0.8829 (2)0.0577 (8)
H150.65240.27440.90210.069*
C160.60827 (16)0.21655 (11)0.7924 (2)0.0479 (7)
H160.57530.24320.75120.058*
C170.43453 (15)0.20319 (10)0.4501 (2)0.0399 (6)
C180.39468 (17)0.18210 (12)0.3574 (2)0.0505 (7)
H180.39700.14230.34240.061*
C190.35137 (19)0.21958 (14)0.2866 (2)0.0623 (8)
H190.32520.20510.22390.075*
C200.3471 (2)0.27838 (14)0.3090 (3)0.0665 (9)
H200.31820.30370.26140.080*
C210.38543 (19)0.29943 (13)0.4014 (3)0.0646 (8)
H210.38230.33920.41650.077*
C220.42870 (18)0.26235 (11)0.4724 (2)0.0527 (7)
H220.45400.27710.53540.063*
N10.52713 (13)0.18375 (8)0.60593 (16)0.0414 (5)
N20.56296 (14)0.14038 (8)0.67014 (16)0.0444 (5)
N30.63253 (12)0.04874 (8)0.61271 (16)0.0396 (5)
N40.61620 (13)−0.03289 (9)0.73112 (17)0.0430 (5)
N50.47290 (14)−0.02945 (9)0.82976 (18)0.0523 (6)
N60.39730 (15)0.00565 (10)0.8391 (2)0.0618 (7)
S10.47272 (5)0.08793 (3)0.51716 (6)0.0486 (2)
U11U22U33U12U13U23
C10.0362 (12)0.0355 (13)0.0431 (14)0.0013 (10)−0.0001 (11)0.0032 (11)
C20.0380 (12)0.0283 (12)0.0425 (14)0.0008 (10)−0.0069 (10)−0.0008 (10)
C30.0362 (12)0.0305 (12)0.0453 (15)0.0006 (10)−0.0020 (10)−0.0003 (11)
C40.0440 (14)0.0471 (16)0.0621 (19)0.0096 (12)0.0070 (12)0.0006 (14)
C50.0365 (12)0.0331 (13)0.0435 (14)−0.0019 (10)−0.0020 (10)0.0033 (11)
C60.0332 (12)0.0411 (14)0.0496 (15)0.0055 (11)−0.0048 (11)−0.0022 (12)
C70.0491 (15)0.0602 (18)0.0568 (19)−0.0083 (13)0.0078 (12)0.0152 (15)
C80.127 (3)0.107 (3)0.073 (3)−0.015 (2)0.048 (2)−0.004 (2)
C90.070 (2)0.066 (2)0.082 (2)0.0031 (17)0.0156 (17)0.0367 (18)
C100.118 (3)0.054 (2)0.117 (3)−0.008 (2)0.038 (3)0.014 (2)
C110.0373 (12)0.0403 (14)0.0372 (14)−0.0053 (10)0.0004 (10)−0.0034 (11)
C120.0557 (15)0.0409 (15)0.0469 (16)−0.0021 (13)−0.0091 (12)0.0008 (12)
C130.0506 (15)0.068 (2)0.0425 (16)−0.0036 (14)−0.0098 (12)0.0037 (14)
C140.0461 (15)0.075 (2)0.0516 (18)−0.0088 (15)−0.0046 (12)−0.0178 (15)
C150.0515 (15)0.0553 (18)0.066 (2)−0.0024 (14)−0.0024 (14)−0.0238 (15)
C160.0451 (14)0.0396 (15)0.0591 (18)0.0003 (11)−0.0071 (12)−0.0098 (13)
C170.0360 (12)0.0388 (14)0.0449 (15)0.0055 (11)0.0022 (10)0.0085 (11)
C180.0537 (15)0.0487 (16)0.0491 (17)0.0087 (13)−0.0019 (13)0.0070 (13)
C190.0596 (17)0.074 (2)0.0532 (19)0.0092 (15)−0.0122 (14)0.0101 (16)
C200.0640 (18)0.061 (2)0.074 (2)0.0148 (16)−0.0108 (16)0.0262 (17)
C210.0640 (18)0.0450 (17)0.085 (2)0.0131 (14)−0.0074 (17)0.0128 (16)
C220.0547 (15)0.0406 (16)0.0627 (19)0.0054 (13)−0.0086 (13)0.0080 (13)
N10.0478 (11)0.0308 (11)0.0457 (12)0.0023 (9)−0.0042 (10)0.0065 (9)
N20.0595 (13)0.0278 (11)0.0461 (13)−0.0011 (9)−0.0168 (10)0.0046 (9)
N30.0373 (10)0.0369 (11)0.0446 (12)−0.0005 (9)0.0006 (8)0.0041 (9)
N40.0377 (11)0.0395 (12)0.0519 (14)0.0061 (9)−0.0012 (9)0.0091 (10)
N50.0481 (12)0.0468 (13)0.0619 (15)0.0026 (10)0.0098 (11)0.0169 (11)
N60.0516 (13)0.0624 (16)0.0714 (17)0.0052 (12)0.0180 (12)0.0111 (13)
S10.0567 (4)0.0362 (4)0.0531 (4)−0.0001 (3)−0.0217 (3)0.0025 (3)
C1—N11.281 (3)C10—H10B0.9600
C1—C171.469 (3)C10—H10C0.9600
C1—S11.749 (2)C11—C161.386 (3)
C2—N31.466 (3)C11—C121.393 (3)
C2—C31.467 (3)C11—N21.411 (3)
C2—N21.487 (3)C12—C131.383 (3)
C2—S11.867 (2)C12—H120.9300
C3—C51.370 (3)C13—C141.376 (4)
C3—C41.401 (3)C13—H130.9300
C4—N61.323 (3)C14—C151.371 (4)
C4—H40.9300C14—H140.9300
C5—N51.352 (3)C15—C161.381 (4)
C5—N41.372 (3)C15—H150.9300
C6—N41.290 (3)C16—H160.9300
C6—N31.361 (3)C17—C181.379 (4)
C6—H60.9300C17—C221.386 (3)
C7—N31.478 (3)C18—C191.382 (4)
C7—C81.482 (4)C18—H180.9300
C7—H7A0.9700C19—C201.377 (4)
C7—H7B0.9700C19—H190.9300
C8—H8A0.9600C20—C211.368 (4)
C8—H8B0.9600C20—H200.9300
C8—H8C0.9600C21—C221.378 (4)
C9—N51.463 (3)C21—H210.9300
C9—C101.486 (5)C22—H220.9300
C9—H9A0.9700N1—N21.377 (3)
C9—H9B0.9700N5—N61.364 (3)
C10—H10A0.9600
N1—C1—C17121.6 (2)C12—C11—N2122.1 (2)
N1—C1—S1115.96 (18)C13—C12—C11119.6 (2)
C17—C1—S1122.39 (18)C13—C12—H12120.2
N3—C2—C3108.05 (18)C11—C12—H12120.2
N3—C2—N2111.20 (18)C14—C13—C12121.4 (3)
C3—C2—N2114.5 (2)C14—C13—H13119.3
N3—C2—S1111.02 (16)C12—C13—H13119.3
C3—C2—S1110.59 (15)C15—C14—C13118.6 (3)
N2—C2—S1101.41 (14)C15—C14—H14120.7
C5—C3—C4104.8 (2)C13—C14—H14120.7
C5—C3—C2121.5 (2)C14—C15—C16121.3 (3)
C4—C3—C2133.8 (2)C14—C15—H15119.3
N6—C4—C3111.7 (2)C16—C15—H15119.3
N6—C4—H4124.2C15—C16—C11120.0 (3)
C3—C4—H4124.2C15—C16—H16120.0
N5—C5—C3107.4 (2)C11—C16—H16120.0
N5—C5—N4124.9 (2)C18—C17—C22119.0 (2)
C3—C5—N4127.7 (2)C18—C17—C1121.3 (2)
N4—C6—N3129.0 (2)C22—C17—C1119.6 (2)
N4—C6—H6115.5C17—C18—C19120.6 (3)
N3—C6—H6115.5C17—C18—H18119.7
N3—C7—C8114.0 (2)C19—C18—H18119.7
N3—C7—H7A108.8C20—C19—C18119.9 (3)
C8—C7—H7A108.8C20—C19—H19120.1
N3—C7—H7B108.8C18—C19—H19120.1
C8—C7—H7B108.8C21—C20—C19119.8 (3)
H7A—C7—H7B107.6C21—C20—H20120.1
C7—C8—H8A109.5C19—C20—H20120.1
C7—C8—H8B109.5C20—C21—C22120.6 (3)
H8A—C8—H8B109.5C20—C21—H21119.7
C7—C8—H8C109.5C22—C21—H21119.7
H8A—C8—H8C109.5C21—C22—C17120.1 (3)
H8B—C8—H8C109.5C21—C22—H22120.0
N5—C9—C10111.5 (3)C17—C22—H22120.0
N5—C9—H9A109.3C1—N1—N2113.15 (19)
C10—C9—H9A109.3N1—N2—C11117.04 (18)
N5—C9—H9B109.3N1—N2—C2118.15 (18)
C10—C9—H9B109.3C11—N2—C2124.77 (19)
H9A—C9—H9B108.0C6—N3—C2122.90 (19)
C9—C10—H10A109.5C6—N3—C7118.6 (2)
C9—C10—H10B109.5C2—N3—C7118.34 (19)
H10A—C10—H10B109.5C6—N4—C5110.84 (19)
C9—C10—H10C109.5C5—N5—N6111.18 (19)
H10A—C10—H10C109.5C5—N5—C9128.3 (2)
H10B—C10—H10C109.5N6—N5—C9120.0 (2)
C16—C11—C12119.1 (2)C4—N6—N5105.0 (2)
C16—C11—N2118.9 (2)C1—S1—C291.28 (10)
D—H···AD—HH···AD···AD—H···A
C14—H14···Cg1i0.932.753.615 (3)155
C20—H20···Cg2ii0.932.773.564 (4)144
Table 1

Hydrogen-bond geometry (, )

Cg1 and Cg2 are the centroids of the C17C22 and C11C16 rings, respectively.

DHA DHHA D A DHA
C14H14Cg1i 0.932.753.615 (3)155
C20H20Cg2ii 0.932.773.564 (4)144

Symmetry codes: (i) ; (ii) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Preparation of 3-substituted-1-isopropyl-1H-pyrazolo[3,4-d]pyrimidin-4-amines as RET kinase inhibitors.

Authors:  Peter Dinér; John P Alao; Johan Söderlund; Per Sunnerhagen; Morten Grøtli
Journal:  J Med Chem       Date:  2012-05-16       Impact factor: 7.446

3.  Novel N2-substituted pyrazolo[3,4-d]pyrimidine adenosine A3 receptor antagonists: inhibition of A3-mediated human glioblastoma cell proliferation.

Authors:  Sabrina Taliani; Concettina La Motta; Laura Mugnaini; Francesca Simorini; Silvia Salerno; Anna Maria Marini; Federico Da Settimo; Sandro Cosconati; Barbara Cosimelli; Giovanni Greco; Vittorio Limongelli; Luciana Marinelli; Ettore Novellino; Osele Ciampi; Simona Daniele; Maria Letizia Trincavelli; Claudia Martini
Journal:  J Med Chem       Date:  2010-05-27       Impact factor: 7.446

4.  Design, synthesis, and structure-activity relationships of pyrazolo[3,4-d]pyrimidines: a novel class of potent enterovirus inhibitors.

Authors:  Jyh-Haur Chern; Kak-Shan Shia; Tsu-An Hsu; Chia-Liang Tai; Chung-Chi Lee; Yen-Chun Lee; Chih-Shiang Chang; Sung-Nien Tseng; Shin-Ru Shih
Journal:  Bioorg Med Chem Lett       Date:  2004-05-17       Impact factor: 2.823

5.  1-Benzyl-3-methyl-3',5'-diphenyl-spiro-[quinoxaline-2(1H),2'(3'H)-1,3,4-thia-diazole].

Authors:  Caleb Ahoya Anothane; Rachid Bouhfid; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-14

6.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

7.  Crystal structure of 4-allyl-sulfanyl-1H-pyrazolo-[3,4-d]pyrimidine.

Authors:  Mohammed El Fal; Youssef Ramli; El Mokhtar Essassi; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-23
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.