Literature DB >> 26594462

Crystal structure of benz-yl(meth-yl)phen-yl[(piperidin-1-ium-1-yl)meth-yl]silane bromide.

Eva Rebecca Barth1, Christopher Golz1, Stephan G Koller1, Carsten Strohmann1.   

Abstract

The title compound, C20H29NSi(+)·Br(-), contains a chiral silicon atom but crystallizes as a racemate. The C-Si-C bond angles in the range of 103.64 (8)-111.59 (9)° are usual for tetra-hedral geometry. The piperidine ring shows a regular chair conformation with an equatorially positioned exocyclic N-C bond. In the crystal, there is a hydrogen bond between the ammonium cation and the bromide anion. The crystal packing shows the dominant inter-molecular inter-action to be the electrostatic attraction between the ammonium cation and the bromide anion.

Entities:  

Keywords:  N—H⋯Br hydrogen bond; chiral organosilane; crystal structure

Year:  2015        PMID: 26594462      PMCID: PMC4647413          DOI: 10.1107/S2056989015016965

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

Benzyl­meth­yl(piperidino­meth­yl)silane and its methyl­iodide salt are used as model systems to investigate the stereochemistry of substitution reactions with silyllithium compounds as nucleophiles, see: Strohmann et al. (2004 ▸).

Experimental

Crystal data

C20H28NSiBr M = 390.43 Monoclinic, a = 13.9311 (12) Å b = 7.4605 (6) Å c = 19.3515 (17) Å β = 100.926 (2)° V = 1974.8 (3) Å3 Z = 4 Mo Kα radiation μ = 2.14 mm−1 T = 173 K 0.2 × 0.2 × 0.1 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS, Bruker, 2015 ▸) T min = 0.421, T max = 0.746 26749 measured reflections 4759 independent reflections 3948 reflections with I > 2σ(I) R int = 0.040

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.080 S = 1.02 4759 reflections 213 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.66 e Å−3 Δρmin = −0.25 e Å−3

Data collection: APEX2 (Bruker, 2003 ▸); cell refinement: SAINT (Bruker, 2003 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: SHELXTL (Sheldrick, 2008 ▸); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015016965/sj5471sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015016965/sj5471Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016965/sj5471Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015016965/sj5471fig1.tif Mol­ecular structure of the title compound with anisotropic displacement ellipsoids drawn at the 50% probability level. An inter­molecular hydrogen bond is shown as a dashed line. Click here for additional data file. b . DOI: 10.1107/S2056989015016965/sj5471fig2.tif Crystal packing of the title compound viewed along b axis. H-atoms are omitted for clarity. CCDC reference: 1423495 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H28NSi+·BrF(000) = 816
Mr = 390.43Dx = 1.313 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 13.9311 (12) ÅCell parameters from 7370 reflections
b = 7.4605 (6) Åθ = 2.9–27.9°
c = 19.3515 (17) ŵ = 2.14 mm1
β = 100.926 (2)°T = 173 K
V = 1974.8 (3) Å3Block, colourless
Z = 40.2 × 0.2 × 0.1 mm
Bruker APEXII CCD diffractometer3948 reflections with I > 2σ(I)
φ and ω scansRint = 0.040
Absorption correction: multi-scan (SADABS, Bruker, 2015)θmax = 28.0°, θmin = 2.1°
Tmin = 0.421, Tmax = 0.746h = −18→18
26749 measured reflectionsk = −9→9
4759 independent reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.031H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.080w = 1/[σ2(Fo2) + (0.0462P)2 + 0.3152P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
4759 reflectionsΔρmax = 0.66 e Å3
213 parametersΔρmin = −0.25 e Å3
0 restraints
Experimental. Absorption correction: SADABS-2014/5 (Bruker,2014/5) was used for absorption correction. wR2(int) was 0.1354 before and 0.0450 after correction. The Ratio of minimum to maximum transmission is 0.5649. The λ/2 correction factor is 0.00150.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. 1. Fixed Uiso At 1.2 times of: All C(H) groups, All C(H,H) groups At 1.5 times of: All C(H,H,H) groups 2.a Secondary CH2 refined with riding coordinates: C2(H2A,H2B), C15(H15A,H15B), C16(H16A,H16B), C17(H17A,H17B), C18(H18A,H18B), C19(H19A,H19B), C20(H20A,H20B) 2.b Aromatic/amide H refined with riding coordinates: C4(H4), C5(H5), C6(H6), C7(H7), C8(H8), C10(H10), C11(H11), C12(H12), C13(H13), C14(H14) 2.c Idealized Me refined as rotating group: C1(H1A,H1B,H1C)
xyzUiso*/Ueq
Si10.27017 (3)0.16579 (6)0.40241 (2)0.02506 (11)
N10.47332 (10)0.2487 (2)0.38731 (7)0.0226 (3)
H10.4648 (13)0.358 (3)0.3882 (9)0.026 (5)*
C10.22693 (15)−0.0080 (3)0.33465 (11)0.0397 (5)
H1A0.23880.03270.28890.060*
H1B0.1568−0.02820.33170.060*
H1C0.2624−0.12020.34770.060*
C20.22659 (14)0.3967 (3)0.37105 (10)0.0332 (4)
H2A0.25800.48720.40550.040*
H2B0.24630.42170.32550.040*
C30.11714 (13)0.4124 (2)0.36237 (9)0.0287 (4)
C40.05486 (15)0.3325 (2)0.30609 (11)0.0365 (4)
H40.08160.26900.27160.044*
C5−0.04527 (17)0.3443 (3)0.29963 (13)0.0494 (6)
H5−0.08670.28760.26120.059*
C6−0.08555 (16)0.4373 (3)0.34831 (14)0.0533 (6)
H6−0.15460.44530.34350.064*
C7−0.02525 (17)0.5190 (3)0.40435 (12)0.0499 (6)
H7−0.05280.58450.43790.060*
C80.07535 (15)0.5058 (3)0.41163 (10)0.0376 (4)
H80.11630.56090.45070.045*
C90.22505 (12)0.1129 (2)0.48553 (9)0.0274 (4)
C100.15034 (14)−0.0107 (3)0.48712 (11)0.0375 (4)
H100.1224−0.07260.44520.045*
C110.11604 (16)−0.0451 (3)0.54855 (12)0.0463 (5)
H110.0652−0.13010.54820.056*
C120.15485 (16)0.0426 (3)0.60973 (11)0.0466 (5)
H120.13110.01860.65170.056*
C130.22922 (17)0.1669 (3)0.60999 (11)0.0423 (5)
H130.25640.22840.65210.051*
C140.26369 (15)0.2009 (3)0.54857 (10)0.0339 (4)
H140.31470.28590.54930.041*
C150.40836 (12)0.1599 (2)0.43050 (9)0.0250 (3)
H15A0.42420.21260.47830.030*
H15B0.42780.03220.43520.030*
C160.57838 (13)0.2155 (3)0.41985 (9)0.0296 (4)
H16A0.59130.08490.42090.036*
H16B0.59110.25960.46900.036*
C170.64701 (14)0.3085 (3)0.37913 (10)0.0351 (4)
H17A0.71550.27960.40070.042*
H17B0.63850.43990.38180.042*
C180.62716 (14)0.2504 (3)0.30259 (10)0.0369 (4)
H18A0.64280.12160.29940.044*
H18B0.66950.31900.27640.044*
C190.52035 (14)0.2826 (3)0.26998 (9)0.0319 (4)
H19A0.50700.41300.26820.038*
H19B0.50710.23640.22110.038*
C200.45269 (13)0.1907 (2)0.31190 (9)0.0276 (4)
H20A0.38400.21950.29080.033*
H20B0.46110.05920.30940.033*
Br10.45737 (2)0.67990 (2)0.38635 (2)0.03319 (7)
U11U22U33U12U13U23
Si10.0243 (2)0.0241 (2)0.0264 (2)0.00079 (18)0.00388 (18)−0.00076 (18)
N10.0252 (8)0.0172 (6)0.0254 (7)0.0034 (5)0.0050 (6)−0.0016 (5)
C10.0374 (11)0.0395 (11)0.0399 (10)−0.0018 (9)0.0013 (8)−0.0105 (9)
C20.0316 (10)0.0306 (9)0.0383 (10)0.0021 (8)0.0090 (8)0.0082 (8)
C30.0312 (10)0.0260 (8)0.0294 (9)0.0031 (7)0.0072 (7)0.0102 (7)
C40.0406 (11)0.0298 (10)0.0364 (10)0.0061 (8)−0.0001 (8)0.0057 (8)
C50.0436 (13)0.0386 (12)0.0582 (14)−0.0035 (9)−0.0100 (11)0.0160 (10)
C60.0292 (11)0.0587 (14)0.0730 (16)0.0058 (10)0.0125 (11)0.0356 (13)
C70.0494 (13)0.0592 (14)0.0475 (12)0.0228 (11)0.0256 (11)0.0215 (11)
C80.0427 (11)0.0385 (10)0.0316 (9)0.0089 (9)0.0068 (8)0.0074 (8)
C90.0250 (9)0.0249 (8)0.0323 (9)0.0042 (7)0.0058 (7)0.0044 (7)
C100.0333 (10)0.0359 (10)0.0420 (10)−0.0051 (8)0.0037 (8)0.0071 (8)
C110.0355 (11)0.0475 (12)0.0578 (14)−0.0038 (9)0.0137 (10)0.0193 (10)
C120.0447 (12)0.0572 (13)0.0427 (12)0.0113 (10)0.0200 (10)0.0164 (10)
C130.0456 (12)0.0479 (13)0.0355 (10)0.0088 (9)0.0130 (9)−0.0018 (9)
C140.0339 (10)0.0333 (10)0.0361 (10)0.0014 (8)0.0110 (8)−0.0032 (8)
C150.0254 (9)0.0248 (8)0.0251 (8)0.0012 (6)0.0052 (6)0.0018 (6)
C160.0243 (9)0.0356 (9)0.0280 (9)0.0052 (7)0.0028 (7)−0.0006 (7)
C170.0246 (9)0.0437 (11)0.0375 (10)0.0002 (8)0.0075 (8)−0.0023 (8)
C180.0331 (11)0.0444 (11)0.0362 (10)0.0042 (9)0.0144 (8)−0.0007 (9)
C190.0365 (10)0.0340 (9)0.0264 (8)0.0038 (8)0.0091 (7)0.0000 (7)
C200.0302 (9)0.0286 (9)0.0234 (8)0.0022 (7)0.0035 (7)−0.0030 (7)
Br10.04173 (13)0.02011 (10)0.03668 (11)0.00323 (7)0.00476 (8)−0.00210 (7)
Si1—C11.8614 (19)C9—C141.400 (3)
Si1—C21.8883 (19)C10—H100.9500
Si1—C91.8766 (18)C10—C111.387 (3)
Si1—C151.8991 (18)C11—H110.9500
N1—H10.82 (2)C11—C121.371 (3)
N1—C151.498 (2)C12—H120.9500
N1—C161.500 (2)C12—C131.389 (3)
N1—C201.497 (2)C13—H130.9500
C1—H1A0.9800C13—C141.387 (3)
C1—H1B0.9800C14—H140.9500
C1—H1C0.9800C15—H15A0.9900
C2—H2A0.9900C15—H15B0.9900
C2—H2B0.9900C16—H16A0.9900
C2—C31.506 (3)C16—H16B0.9900
C3—C41.391 (3)C16—C171.518 (3)
C3—C81.394 (3)C17—H17A0.9900
C4—H40.9500C17—H17B0.9900
C4—C51.379 (3)C17—C181.518 (3)
C5—H50.9500C18—H18A0.9900
C5—C61.373 (4)C18—H18B0.9900
C6—H60.9500C18—C191.521 (3)
C6—C71.382 (4)C19—H19A0.9900
C7—H70.9500C19—H19B0.9900
C7—C81.385 (3)C19—C201.519 (3)
C8—H80.9500C20—H20A0.9900
C9—C101.395 (3)C20—H20B0.9900
C1—Si1—C2111.59 (9)C10—C11—H11119.7
C1—Si1—C9109.93 (9)C12—C11—C10120.6 (2)
C1—Si1—C15111.14 (8)C12—C11—H11119.7
C2—Si1—C15111.09 (8)C11—C12—H12120.2
C9—Si1—C2109.14 (8)C11—C12—C13119.55 (19)
C9—Si1—C15103.64 (8)C13—C12—H12120.2
C15—N1—H1108.7 (13)C12—C13—H13120.1
C15—N1—C16109.70 (13)C14—C13—C12119.9 (2)
C16—N1—H1106.7 (13)C14—C13—H13120.1
C20—N1—H1107.8 (12)C9—C14—H14119.3
C20—N1—C15113.03 (13)C13—C14—C9121.48 (19)
C20—N1—C16110.67 (13)C13—C14—H14119.3
Si1—C1—H1A109.5Si1—C15—H15A107.0
Si1—C1—H1B109.5Si1—C15—H15B107.0
Si1—C1—H1C109.5N1—C15—Si1121.12 (11)
H1A—C1—H1B109.5N1—C15—H15A107.0
H1A—C1—H1C109.5N1—C15—H15B107.0
H1B—C1—H1C109.5H15A—C15—H15B106.8
Si1—C2—H2A109.4N1—C16—H16A109.3
Si1—C2—H2B109.4N1—C16—H16B109.3
H2A—C2—H2B108.0N1—C16—C17111.52 (14)
C3—C2—Si1111.32 (12)H16A—C16—H16B108.0
C3—C2—H2A109.4C17—C16—H16A109.3
C3—C2—H2B109.4C17—C16—H16B109.3
C4—C3—C2121.46 (17)C16—C17—H17A109.4
C4—C3—C8118.03 (18)C16—C17—H17B109.4
C8—C3—C2120.50 (17)C16—C17—C18111.09 (16)
C3—C4—H4119.5H17A—C17—H17B108.0
C5—C4—C3120.9 (2)C18—C17—H17A109.4
C5—C4—H4119.5C18—C17—H17B109.4
C4—C5—H5119.7C17—C18—H18A109.7
C6—C5—C4120.5 (2)C17—C18—H18B109.7
C6—C5—H5119.7C17—C18—C19110.05 (15)
C5—C6—H6120.2H18A—C18—H18B108.2
C5—C6—C7119.7 (2)C19—C18—H18A109.7
C7—C6—H6120.2C19—C18—H18B109.7
C6—C7—H7120.0C18—C19—H19A109.4
C6—C7—C8120.1 (2)C18—C19—H19B109.4
C8—C7—H7120.0H19A—C19—H19B108.0
C3—C8—H8119.6C20—C19—C18111.38 (15)
C7—C8—C3120.8 (2)C20—C19—H19A109.4
C7—C8—H8119.6C20—C19—H19B109.4
C10—C9—Si1122.04 (14)N1—C20—C19111.48 (14)
C10—C9—C14117.13 (17)N1—C20—H20A109.3
C14—C9—Si1120.80 (14)N1—C20—H20B109.3
C9—C10—H10119.3C19—C20—H20A109.3
C11—C10—C9121.40 (19)C19—C20—H20B109.3
C11—C10—H10119.3H20A—C20—H20B108.0
Si1—C2—C3—C4−74.37 (19)C9—Si1—C2—C3−55.09 (15)
Si1—C2—C3—C8104.58 (17)C9—Si1—C15—N1−160.77 (12)
Si1—C9—C10—C11−178.33 (15)C9—C10—C11—C120.2 (3)
Si1—C9—C14—C13178.18 (15)C10—C9—C14—C130.0 (3)
N1—C16—C17—C18−56.7 (2)C10—C11—C12—C130.0 (3)
C1—Si1—C2—C366.61 (15)C11—C12—C13—C14−0.1 (3)
C1—Si1—C9—C10−15.24 (18)C12—C13—C14—C90.2 (3)
C1—Si1—C9—C14166.66 (15)C14—C9—C10—C11−0.2 (3)
C1—Si1—C15—N181.20 (15)C15—Si1—C2—C3−168.75 (12)
C2—Si1—C9—C10107.45 (16)C15—Si1—C9—C10−134.11 (15)
C2—Si1—C9—C14−70.65 (16)C15—Si1—C9—C1447.79 (16)
C2—Si1—C15—N1−43.69 (15)C15—N1—C16—C17−178.06 (14)
C2—C3—C4—C5178.46 (17)C15—N1—C20—C19−179.63 (14)
C2—C3—C8—C7−179.31 (17)C16—N1—C15—Si1−177.28 (11)
C3—C4—C5—C60.8 (3)C16—N1—C20—C19−56.13 (18)
C4—C3—C8—C7−0.3 (3)C16—C17—C18—C1955.3 (2)
C4—C5—C6—C7−0.3 (3)C17—C18—C19—C20−55.1 (2)
C5—C6—C7—C8−0.6 (3)C18—C19—C20—N156.0 (2)
C6—C7—C8—C30.9 (3)C20—N1—C15—Si1−53.24 (17)
C8—C3—C4—C5−0.5 (3)C20—N1—C16—C1756.54 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1···Br10.82 (2)2.41 (2)3.2242 (15)173.4 (17)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1Br10.82(2)2.41(2)3.2242(15)173.4(17)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Enantiodivergence in the reactions of a highly enantiomerically enriched silyllithium compound with benzyl halides: control of inversion and retention by selection of halide.

Authors:  Carsten Strohmann; Martin Bindl; Verena C Fraass; Jan Hörnig
Journal:  Angew Chem Int Ed Engl       Date:  2004-02-13       Impact factor: 15.336

3.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  4 in total
  1 in total

1.  Crystal structure and Hirshfeld surface analysis of 1-[(benzyl-dimethyl-sil-yl)meth-yl]-1-ethyl-piperidin-1-ium ethane-sulfonate.

Authors:  Jan-Lukas Kirchhoff; Stephan G Koller; Kathrin Louven; Carsten Strohmann
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2022-01-07
  1 in total

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