Literature DB >> 26594445

Crystal structure of mandipropamid.

Hyunjin Park1, Jineun Kim1, Gihaeng Kang1, Tae Ho Kim1.   

Abstract

In the title compound, C23H22ClNO4 (systematic name: (RS)-2-(4-chloro-phen-yl)-N-{2-[3-meth-oxy-4-(prop-2-yn-1-yl-oxy)phen-yl]eth-yl}-2-(prop-2-yn-yloxy)acetamide), an amide fungicide, the dihedral angle between the chloro-benzene and benzene rings is 65.36 (6)°. In the crystal, N-H⋯O hydrogen bonds lead to zigzag supra-molecular chains along the c axis (glide symmetry). These are connected into layers by C-H⋯O and C-H⋯π inter-actions; the layers stack along the a axis with no specific inter-molecular inter-actions between them.

Entities:  

Keywords:  C—H⋯π inter­actions; amide fungicide; conformation; crystal structure; hydrogen bonding

Year:  2015        PMID: 26594445      PMCID: PMC4647438          DOI: 10.1107/S2056989015016643

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For information on the fungicidal properties of the title compound, see: Zhang et al. (2014 ▸). For a related crystal structure, see: Davis & Healy (2008 ▸).

Experimental

Crystal data

C23H22ClNO4 M = 411.86 Monoclinic, a = 26.3733 (17) Å b = 9.4740 (6) Å c = 8.4882 (5) Å β = 91.013 (3)° V = 2120.5 (2) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 173 K 0.22 × 0.15 × 0.10 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▸) T min = 0.722, T max = 0.746 36727 measured reflections 4885 independent reflections 3686 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.131 S = 1.04 4885 reflections 263 parameters H-atom parameters constrained Δρmax = 0.82 e Å−3 Δρmin = −0.29 e Å−3

Data collection: APEX2 (Bruker, 2013 ▸); cell refinement: SAINT (Bruker, 2013 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: DIAMOND (Brandenburg, 2010 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015016643/tk5382sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015016643/tk5382Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016643/tk5382Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015016643/tk5382fig1.tif The mol­ecular structure of the title compound with the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius. Click here for additional data file. b . DOI: 10.1107/S2056989015016643/tk5382fig2.tif Crystal packing viewed along the b axis. The hydrogen bonds are shown as dashed lines. CCDC reference: 1422569 Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H22ClNO4F(000) = 864
Mr = 411.86Dx = 1.290 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 26.3733 (17) ÅCell parameters from 9957 reflections
b = 9.4740 (6) Åθ = 2.3–26.3°
c = 8.4882 (5) ŵ = 0.21 mm1
β = 91.013 (3)°T = 173 K
V = 2120.5 (2) Å3Plate, colourless
Z = 40.22 × 0.15 × 0.10 mm
Bruker APEXII CCD diffractometer3686 reflections with I > 2σ(I)
φ and ω scansRint = 0.039
Absorption correction: multi-scan (SADABS; Bruker, 2013)θmax = 27.6°, θmin = 2.3°
Tmin = 0.722, Tmax = 0.746h = −33→34
36727 measured reflectionsk = −12→12
4885 independent reflectionsl = −11→10
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.052H-atom parameters constrained
wR(F2) = 0.131w = 1/[σ2(Fo2) + (0.0444P)2 + 1.677P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
4885 reflectionsΔρmax = 0.82 e Å3
263 parametersΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Cl10.45595 (2)0.22978 (7)0.12537 (9)0.0543 (2)
O10.67498 (6)0.42193 (16)−0.19373 (17)0.0376 (4)
O20.70934 (5)0.38856 (15)0.20630 (16)0.0332 (3)
O30.86165 (6)−0.36494 (16)0.1328 (2)0.0442 (4)
O40.93566 (5)−0.26941 (15)0.30322 (18)0.0383 (4)
N10.72949 (6)0.25526 (19)−0.0044 (2)0.0341 (4)
H1N0.72390.2407−0.10560.041*
C10.51676 (8)0.2878 (2)0.0816 (3)0.0355 (5)
C20.53176 (8)0.4194 (2)0.1302 (3)0.0375 (5)
H20.50940.47750.18830.045*
C30.57995 (8)0.4671 (2)0.0936 (2)0.0341 (5)
H30.59080.55760.12860.041*
C40.61212 (7)0.3842 (2)0.0069 (2)0.0298 (4)
C50.59606 (8)0.2516 (2)−0.0420 (3)0.0375 (5)
H50.61790.1942−0.10250.045*
C60.54833 (9)0.2019 (2)−0.0035 (3)0.0404 (5)
H60.53760.1103−0.03520.048*
C70.66491 (7)0.4385 (2)−0.0328 (2)0.0315 (4)
H70.66720.5409−0.00510.038*
C80.64981 (9)0.5251 (2)−0.2903 (3)0.0417 (5)
H8A0.61300.5220−0.27000.050*
H8B0.65470.5010−0.40250.050*
C90.66839 (9)0.6681 (3)−0.2614 (3)0.0446 (6)
C100.68291 (11)0.7840 (3)−0.2365 (3)0.0575 (7)
H100.69460.8773−0.21640.069*
C110.70398 (7)0.3566 (2)0.0662 (2)0.0291 (4)
C120.76667 (8)0.1662 (3)0.0785 (3)0.0380 (5)
H12A0.74920.08290.12220.046*
H12B0.78170.22000.16780.046*
C130.80847 (8)0.1170 (3)−0.0268 (3)0.0387 (5)
H13A0.79360.0687−0.12020.046*
H13B0.82800.1994−0.06390.046*
C140.84327 (8)0.0174 (2)0.0610 (2)0.0346 (5)
C150.83530 (8)−0.1280 (2)0.0534 (3)0.0355 (5)
H150.8081−0.1637−0.00960.043*
C160.86616 (8)−0.2208 (2)0.1356 (3)0.0343 (5)
C170.90637 (7)−0.1685 (2)0.2301 (2)0.0329 (5)
C180.91396 (8)−0.0250 (2)0.2401 (3)0.0376 (5)
H180.94070.01130.30460.045*
C190.88242 (8)0.0672 (2)0.1556 (3)0.0389 (5)
H190.88800.16610.16330.047*
C200.81997 (9)−0.4224 (3)0.0456 (3)0.0503 (6)
H20A0.7882−0.38640.08810.075*
H20B0.8206−0.52560.05380.075*
H20C0.8225−0.3948−0.06530.075*
C210.97493 (9)−0.2226 (3)0.4095 (3)0.0428 (5)
H21A0.9884−0.30490.46870.051*
H21B0.9603−0.15630.48640.051*
C221.01689 (8)−0.1525 (2)0.3292 (3)0.0417 (5)
C231.05017 (10)−0.0922 (3)0.2672 (4)0.0542 (7)
H231.0770−0.04350.21730.065*
U11U22U33U12U13U23
Cl10.0349 (3)0.0530 (4)0.0753 (5)−0.0051 (3)0.0082 (3)0.0229 (3)
O10.0426 (9)0.0383 (8)0.0318 (8)0.0099 (7)0.0019 (6)0.0045 (6)
O20.0363 (8)0.0359 (8)0.0272 (8)0.0032 (6)−0.0033 (6)−0.0002 (6)
O30.0406 (9)0.0346 (8)0.0572 (10)−0.0052 (7)−0.0040 (8)−0.0044 (7)
O40.0323 (8)0.0362 (8)0.0462 (9)0.0008 (6)−0.0047 (7)0.0013 (7)
N10.0321 (9)0.0464 (10)0.0238 (9)0.0094 (8)−0.0022 (7)0.0002 (8)
C10.0289 (10)0.0399 (12)0.0376 (12)−0.0010 (9)−0.0011 (9)0.0130 (10)
C20.0335 (11)0.0385 (12)0.0406 (12)0.0072 (9)0.0060 (9)0.0049 (10)
C30.0329 (11)0.0322 (11)0.0370 (12)0.0015 (9)−0.0007 (9)0.0025 (9)
C40.0278 (10)0.0342 (10)0.0272 (10)0.0023 (8)−0.0040 (8)0.0065 (8)
C50.0370 (12)0.0410 (12)0.0347 (12)0.0057 (9)0.0025 (9)−0.0018 (9)
C60.0408 (12)0.0361 (12)0.0440 (13)−0.0038 (10)−0.0043 (10)0.0021 (10)
C70.0285 (10)0.0390 (11)0.0270 (10)0.0053 (8)−0.0022 (8)−0.0002 (9)
C80.0417 (12)0.0439 (13)0.0394 (13)0.0066 (10)−0.0042 (10)0.0133 (10)
C90.0429 (13)0.0469 (14)0.0439 (14)0.0045 (11)−0.0002 (10)0.0175 (11)
C100.0650 (18)0.0500 (16)0.0574 (17)−0.0014 (13)−0.0046 (14)0.0125 (13)
C110.0238 (9)0.0344 (11)0.0290 (11)−0.0015 (8)0.0015 (8)0.0046 (8)
C120.0341 (11)0.0478 (13)0.0321 (12)0.0116 (10)0.0027 (9)0.0022 (10)
C130.0334 (11)0.0467 (13)0.0362 (12)0.0098 (10)0.0053 (9)0.0029 (10)
C140.0282 (10)0.0419 (12)0.0339 (11)0.0056 (9)0.0063 (8)−0.0003 (9)
C150.0260 (10)0.0448 (12)0.0355 (12)0.0007 (9)0.0004 (9)−0.0061 (10)
C160.0300 (10)0.0342 (11)0.0389 (12)−0.0003 (9)0.0049 (9)−0.0039 (9)
C170.0262 (10)0.0369 (11)0.0356 (11)0.0040 (8)0.0036 (8)−0.0006 (9)
C180.0273 (10)0.0384 (11)0.0471 (13)−0.0005 (9)−0.0014 (9)−0.0071 (10)
C190.0295 (11)0.0331 (11)0.0541 (14)0.0025 (9)0.0034 (10)−0.0022 (10)
C200.0419 (13)0.0477 (14)0.0611 (16)−0.0150 (11)0.0014 (12)−0.0080 (12)
C210.0380 (12)0.0478 (13)0.0426 (13)0.0008 (10)−0.0064 (10)0.0044 (11)
C220.0317 (11)0.0387 (12)0.0542 (14)0.0063 (10)−0.0086 (10)0.0004 (11)
C230.0346 (13)0.0445 (14)0.083 (2)0.0032 (11)−0.0008 (13)0.0063 (14)
Cl1—C11.742 (2)C8—H8B0.9900
O1—C71.405 (2)C9—C101.181 (4)
O1—C81.432 (2)C10—H100.9500
O2—C111.232 (2)C12—C131.506 (3)
O3—C161.371 (3)C12—H12A0.9900
O3—C201.423 (3)C12—H12B0.9900
O4—C171.371 (2)C13—C141.505 (3)
O4—C211.432 (3)C13—H13A0.9900
N1—C111.323 (3)C13—H13B0.9900
N1—C121.464 (3)C14—C191.380 (3)
N1—H1N0.8800C14—C151.394 (3)
C1—C21.369 (3)C15—C161.379 (3)
C1—C61.378 (3)C15—H150.9500
C2—C31.389 (3)C16—C171.409 (3)
C2—H20.9500C17—C181.376 (3)
C3—C41.379 (3)C18—C191.396 (3)
C3—H30.9500C18—H180.9500
C4—C51.386 (3)C19—H190.9500
C4—C71.528 (3)C20—H20A0.9800
C5—C61.388 (3)C20—H20B0.9800
C5—H50.9500C20—H20C0.9800
C6—H60.9500C21—C221.469 (3)
C7—C111.529 (3)C21—H21A0.9900
C7—H71.0000C21—H21B0.9900
C8—C91.460 (4)C22—C231.179 (3)
C8—H8A0.9900C23—H230.9500
C7—O1—C8112.75 (16)C13—C12—H12A109.1
C16—O3—C20117.13 (18)N1—C12—H12B109.1
C17—O4—C21117.70 (17)C13—C12—H12B109.1
C11—N1—C12122.83 (17)H12A—C12—H12B107.8
C11—N1—H1N118.6C14—C13—C12110.27 (18)
C12—N1—H1N118.6C14—C13—H13A109.6
C2—C1—C6121.4 (2)C12—C13—H13A109.6
C2—C1—Cl1119.05 (17)C14—C13—H13B109.6
C6—C1—Cl1119.50 (18)C12—C13—H13B109.6
C1—C2—C3119.3 (2)H13A—C13—H13B108.1
C1—C2—H2120.3C19—C14—C15118.4 (2)
C3—C2—H2120.3C19—C14—C13121.1 (2)
C4—C3—C2120.5 (2)C15—C14—C13120.4 (2)
C4—C3—H3119.7C16—C15—C14121.3 (2)
C2—C3—H3119.7C16—C15—H15119.4
C3—C4—C5119.24 (19)C14—C15—H15119.4
C3—C4—C7119.81 (19)O3—C16—C15125.2 (2)
C5—C4—C7120.94 (19)O3—C16—C17115.09 (19)
C4—C5—C6120.7 (2)C15—C16—C17119.7 (2)
C4—C5—H5119.7O4—C17—C18125.51 (19)
C6—C5—H5119.7O4—C17—C16115.16 (18)
C1—C6—C5118.8 (2)C18—C17—C16119.3 (2)
C1—C6—H6120.6C17—C18—C19120.1 (2)
C5—C6—H6120.6C17—C18—H18119.9
O1—C7—C4111.42 (16)C19—C18—H18119.9
O1—C7—C11109.91 (16)C14—C19—C18121.2 (2)
C4—C7—C11108.39 (16)C14—C19—H19119.4
O1—C7—H7109.0C18—C19—H19119.4
C4—C7—H7109.0O3—C20—H20A109.5
C11—C7—H7109.0O3—C20—H20B109.5
O1—C8—C9112.75 (19)H20A—C20—H20B109.5
O1—C8—H8A109.0O3—C20—H20C109.5
C9—C8—H8A109.0H20A—C20—H20C109.5
O1—C8—H8B109.0H20B—C20—H20C109.5
C9—C8—H8B109.0O4—C21—C22112.97 (19)
H8A—C8—H8B107.8O4—C21—H21A109.0
C10—C9—C8179.0 (3)C22—C21—H21A109.0
C9—C10—H10180.0O4—C21—H21B109.0
O2—C11—N1124.40 (18)C22—C21—H21B109.0
O2—C11—C7118.06 (18)H21A—C21—H21B107.8
N1—C11—C7117.53 (17)C23—C22—C21177.8 (3)
N1—C12—C13112.59 (17)C22—C23—H23180.0
N1—C12—H12A109.1
C6—C1—C2—C3−0.3 (3)C11—N1—C12—C13−149.7 (2)
Cl1—C1—C2—C3−179.05 (17)N1—C12—C13—C14−175.73 (19)
C1—C2—C3—C41.2 (3)C12—C13—C14—C19−84.1 (3)
C2—C3—C4—C5−0.7 (3)C12—C13—C14—C1593.3 (3)
C2—C3—C4—C7179.77 (19)C19—C14—C15—C16−1.2 (3)
C3—C4—C5—C6−0.5 (3)C13—C14—C15—C16−178.71 (19)
C7—C4—C5—C6178.97 (19)C20—O3—C16—C15−3.9 (3)
C2—C1—C6—C5−0.9 (3)C20—O3—C16—C17176.77 (19)
Cl1—C1—C6—C5177.82 (17)C14—C15—C16—O3−178.8 (2)
C4—C5—C6—C11.3 (3)C14—C15—C16—C170.5 (3)
C8—O1—C7—C476.5 (2)C21—O4—C17—C185.6 (3)
C8—O1—C7—C11−163.30 (17)C21—O4—C17—C16−175.78 (18)
C3—C4—C7—O1−130.98 (19)O3—C16—C17—O41.2 (3)
C5—C4—C7—O149.5 (2)C15—C16—C17—O4−178.20 (18)
C3—C4—C7—C11108.0 (2)O3—C16—C17—C18179.9 (2)
C5—C4—C7—C11−71.5 (2)C15—C16—C17—C180.5 (3)
C7—O1—C8—C965.9 (2)O4—C17—C18—C19177.8 (2)
C12—N1—C11—O21.5 (3)C16—C17—C18—C19−0.8 (3)
C12—N1—C11—C7−177.93 (19)C15—C14—C19—C181.0 (3)
O1—C7—C11—O2161.04 (17)C13—C14—C19—C18178.4 (2)
C4—C7—C11—O2−77.0 (2)C17—C18—C19—C140.0 (3)
O1—C7—C11—N1−19.5 (3)C17—O4—C21—C22−69.6 (3)
C4—C7—C11—N1102.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O2i0.882.042.850 (2)152
C10—H10···O2ii0.952.353.218 (3)152
C12—H12A···O1iii0.992.533.232 (3)128
C20—H20C···Cg2iv0.982.843.709 (3)148
Table 1

Hydrogen-bond geometry (, )

Cg2 is the centroid of the C14C19 ring.

DHA DHHA D A DHA
N1H1NO2i 0.882.042.850(2)152
C10H10O2ii 0.952.353.218(3)152
C12H12AO1iii 0.992.533.232(3)128
C20H20C Cg2iv 0.982.843.709(3)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(3-Chloro-4-hydroxy-phen-yl)-N-(3,4-dimethoxy-pheneth-yl)acetamide.

Authors:  Rohan A Davis; Peter C Healy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-10

3.  Enantioselective determination of carboxyl acid amide fungicide mandipropamid in vegetables and fruits by chiral LC coupled with MS/MS.

Authors:  Hu Zhang; Xiangyun Wang; Xinquan Wang; Mingrong Qian; Mingfei Xu; Hao Xu; Peipei Qi; Qiang Wang; Shulin Zhuang
Journal:  J Sep Sci       Date:  2013-12-13       Impact factor: 3.645

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  4 in total

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