Literature DB >> 26594442

The crystal structure of 2-[5-(di-methyl-amino)-naphthalene-1-sulfonamido]-phenyl 5-(di-methyl-amino)-naphthalene-1-sulfonate.

Kittipong Chainok1, Tanwawan Duangthongyou2, Thawatchai Tuntulani3, Apinya Chuenka4, Boontana Wannalerse4.   

Abstract

The complete mol-ecule of the title compound, C30H29N3O5S2, is generated by a crystallographic twofold axis: the O atom and NH group attached to the central benzene ring are statistically disordered. The dihedral angle between the naphthalene ring system and the central benzene ring is 52.99 (6)°, while the pendant naphthalene ring systems subtend a dihedral angle of 68.17 (4)°. An intra-molecular C-H⋯O hydrogen bond closes an S(6) ring. In the crystal, the mol-ecules are linked by weak C-H⋯O hydrogen bonds.

Entities:  

Keywords:  crystal structure; dansyl derivatives; disorder; hydrogen bonding; π-stacking

Year:  2015        PMID: 26594442      PMCID: PMC4647440          DOI: 10.1107/S2056989015016199

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the use of dansyl tags to monitor biological activity in enzyme systems, see: Brown et al. (1970 ▸); Liu et al. (2010 ▸). Dansyl-conjugated liposome has been used to modulate the fluorescence resonance energy transfer (FRET) mechanism, see: Li et al. (2006 ▸). Dansyl fluoro­genic sensors have been used for the recognition and detection of targets such as cationic and anionic species, see: Cao et al. (2014 ▸); Jisha et al. (2009 ▸); Bhalla et al. (2007 ▸). For crystal structures of dansyl derivatives, see: Bhatt et al. (2011 ▸); Zhang et al. (2009 ▸) and of metalcalix[4]arene complexes bearing two dansyl carboxamide units, see: Buie et al. (2008 ▸).

Experimental

Crystal data

C30H29N3O5S2 M = 575.68 Monoclinic, a = 12.7594 (13) Å b = 13.3481 (14) Å c = 16.4331 (17) Å β = 98.349 (4)° V = 2769.1 (5) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 296 K 0.26 × 0.22 × 0.22 mm

Data collection

Bruker D8 QUEST CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▸) T min = 0.698, T max = 0.746 17644 measured reflections 3444 independent reflections 2246 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.113 S = 1.03 3444 reflections 186 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.23 e Å−3

Data collection: APEX2 (Bruker, 2014 ▸); cell refinement: SAINT (Bruker, 2014 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015016199/gw2153sup1.cif Structure factors: contains datablock(s) bw6. DOI: 10.1107/S2056989015016199/gw2153Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016199/gw2153Isup3.cdx Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016199/gw2153Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015016199/gw2153fig1.tif The mol­ecular structure of the title compound with 30% probability ellipsoids and atom numbering. Hydrogen atoms are omitted for clarity. Click here for additional data file. . DOI: 10.1107/S2056989015016199/gw2153fig2.tif The crystal packing of the title compound, viewed along the [110] direction. CCDC reference: 1421273 Additional supporting information: crystallographic information; 3D view; checkCIF report
C30H29N3O5S2F(000) = 1208
Mr = 575.68Dx = 1.381 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 12.7594 (13) ÅCell parameters from 4957 reflections
b = 13.3481 (14) Åθ = 3.1–25.7°
c = 16.4331 (17) ŵ = 0.24 mm1
β = 98.349 (4)°T = 296 K
V = 2769.1 (5) Å3Block, light green
Z = 40.26 × 0.22 × 0.22 mm
Bruker D8 QUEST CMOS diffractometer3444 independent reflections
Radiation source: microfocus sealed x-ray tube, Incoatec Iµus2246 reflections with I > 2σ(I)
GraphiteDouble Bounce Multilayer Mirror monochromatorRint = 0.041
Detector resolution: 10.5 pixels mm-1θmax = 28.3°, θmin = 3.1°
ω and φ scansh = −15→16
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −17→17
Tmin = 0.698, Tmax = 0.746l = −21→21
17644 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.047H-atom parameters constrained
wR(F2) = 0.113w = 1/[σ2(Fo2) + (0.0488P)2 + 1.1669P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3444 reflectionsΔρmax = 0.26 e Å3
186 parametersΔρmin = −0.23 e Å3
0 restraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
S10.69732 (3)0.73580 (4)0.32645 (3)0.05431 (17)
N10.603 (2)0.709 (2)0.2569 (14)0.0418 (18)0.5
H10.58010.75370.22150.050*0.5
O20.77825 (10)0.66139 (12)0.33521 (10)0.0736 (5)
O30.72349 (11)0.83601 (11)0.30878 (10)0.0711 (4)
N20.35617 (13)0.82675 (13)0.57539 (10)0.0609 (5)
C110.55450 (13)0.61136 (13)0.25005 (10)0.0433 (4)
C50.49120 (13)0.77874 (12)0.49182 (10)0.0427 (4)
C60.54736 (13)0.79731 (12)0.42414 (10)0.0413 (4)
C10.62854 (13)0.72779 (13)0.41220 (11)0.0450 (4)
C100.40779 (14)0.84536 (14)0.50673 (12)0.0495 (4)
C120.60785 (15)0.52183 (15)0.24889 (12)0.0543 (5)
H120.68060.52150.24810.065*
C70.51636 (15)0.87928 (13)0.37174 (11)0.0500 (4)
H70.55330.89400.32850.060*
C40.51413 (16)0.69084 (14)0.53896 (12)0.0531 (5)
H40.47480.67660.58100.064*
C20.65034 (16)0.64565 (15)0.46148 (12)0.0582 (5)
H20.70460.60220.45270.070*
C90.37880 (17)0.92039 (15)0.45129 (13)0.0612 (5)
H90.32200.96150.45830.073*
C80.43259 (17)0.93625 (15)0.38477 (13)0.0611 (5)
H80.41040.98760.34800.073*
C130.55357 (17)0.43329 (16)0.24897 (14)0.0665 (6)
H130.58950.37280.24760.080*
C30.59130 (17)0.62698 (15)0.52481 (13)0.0635 (6)
H30.60520.57020.55740.076*
C140.41854 (19)0.83896 (17)0.65611 (13)0.0707 (6)
H14A0.49050.81970.65370.106*
H14B0.38980.79750.69510.106*
H14C0.41650.90780.67270.106*
C150.25143 (19)0.8715 (2)0.57308 (17)0.0878 (8)
H15A0.25870.94190.58460.132*
H15B0.21530.84010.61360.132*
H15C0.21140.86200.51950.132*
O10.6121 (16)0.7010 (16)0.2444 (11)0.0418 (18)0.5
U11U22U33U12U13U23
S10.0322 (2)0.0701 (4)0.0622 (3)−0.0032 (2)0.0121 (2)−0.0040 (3)
N10.035 (3)0.051 (3)0.043 (5)0.0008 (19)0.017 (2)−0.002 (3)
O20.0366 (7)0.1019 (12)0.0833 (10)0.0177 (7)0.0120 (7)−0.0060 (9)
O30.0528 (8)0.0783 (10)0.0848 (10)−0.0260 (7)0.0188 (7)−0.0017 (8)
N20.0564 (10)0.0708 (12)0.0595 (10)0.0057 (8)0.0213 (8)−0.0053 (8)
C110.0430 (9)0.0499 (10)0.0401 (9)−0.0004 (8)0.0161 (8)0.0007 (8)
C50.0422 (9)0.0435 (10)0.0411 (9)0.0018 (7)0.0023 (7)−0.0002 (7)
C60.0387 (9)0.0416 (9)0.0426 (9)−0.0021 (7)0.0023 (7)−0.0026 (7)
C10.0367 (9)0.0517 (10)0.0454 (10)0.0024 (8)0.0017 (7)−0.0020 (8)
C100.0474 (10)0.0508 (11)0.0509 (11)0.0029 (8)0.0088 (8)−0.0037 (8)
C120.0515 (11)0.0591 (13)0.0566 (11)0.0084 (9)0.0225 (9)0.0023 (9)
C70.0572 (11)0.0458 (10)0.0478 (10)0.0015 (9)0.0101 (9)0.0054 (8)
C40.0616 (12)0.0523 (11)0.0459 (10)0.0048 (9)0.0098 (9)0.0076 (9)
C20.0543 (11)0.0605 (12)0.0585 (12)0.0223 (9)0.0033 (9)0.0026 (10)
C90.0606 (12)0.0543 (12)0.0702 (13)0.0212 (10)0.0144 (10)0.0039 (10)
C80.0715 (14)0.0484 (11)0.0626 (12)0.0162 (10)0.0074 (10)0.0128 (9)
C130.0791 (14)0.0509 (12)0.0752 (14)0.0108 (10)0.0306 (13)0.0021 (11)
C30.0775 (14)0.0554 (12)0.0570 (12)0.0212 (11)0.0078 (11)0.0144 (10)
C140.0904 (17)0.0706 (15)0.0549 (13)0.0006 (12)0.0233 (12)−0.0004 (11)
C150.0640 (14)0.111 (2)0.0949 (19)0.0165 (14)0.0343 (14)−0.0055 (15)
O10.035 (3)0.051 (3)0.043 (5)0.0008 (19)0.017 (2)−0.002 (3)
S1—N11.58 (3)C12—H120.9300
S1—O21.4248 (14)C12—C131.370 (3)
S1—O31.4189 (15)C7—H70.9300
S1—C11.7681 (18)C7—C81.354 (3)
S1—O11.67 (2)C4—H40.9300
N1—H10.8600C4—C31.348 (3)
N1—C111.44 (3)C2—H20.9300
N2—C101.409 (2)C2—C31.393 (3)
N2—C141.454 (3)C9—H90.9300
N2—C151.459 (3)C9—C81.389 (3)
C11—C11i1.391 (3)C8—H80.9300
C11—C121.377 (2)C13—C13i1.372 (4)
C11—O11.41 (2)C13—H130.9300
C5—C61.429 (2)C3—H30.9300
C5—C101.435 (2)C14—H14A0.9600
C5—C41.413 (2)C14—H14B0.9600
C6—C11.425 (2)C14—H14C0.9600
C6—C71.413 (2)C15—H15A0.9600
C1—C21.367 (3)C15—H15B0.9600
C10—C91.368 (3)C15—H15C0.9600
N1—S1—C198.6 (8)C6—C7—H7120.1
O2—S1—N1112.1 (9)C8—C7—C6119.74 (17)
O2—S1—C1108.28 (9)C8—C7—H7120.1
O2—S1—O1105.4 (6)C5—C4—H4119.0
O3—S1—N1104.3 (10)C3—C4—C5121.93 (18)
O3—S1—O2119.29 (9)C3—C4—H4119.0
O3—S1—C1112.27 (9)C1—C2—H2120.0
O3—S1—O1104.0 (7)C1—C2—C3120.02 (18)
O1—S1—C1106.6 (6)C3—C2—H2120.0
S1—N1—H1118.6C10—C9—H9119.4
C11—N1—S1122.8 (18)C10—C9—C8121.27 (18)
C11—N1—H1118.6C8—C9—H9119.4
C10—N2—C14116.97 (16)C7—C8—C9122.05 (18)
C10—N2—C15116.09 (18)C7—C8—H8119.0
C14—N2—C15110.84 (18)C9—C8—H8119.0
C11i—C11—N1115.0 (10)C12—C13—C13i120.37 (12)
C11i—C11—O1121.9 (8)C12—C13—H13119.8
C12—C11—N1125.1 (10)C13i—C13—H13119.8
C12—C11—C11i119.76 (11)C4—C3—C2120.24 (18)
C12—C11—O1118.1 (8)C4—C3—H3119.9
C6—C5—C10119.56 (15)C2—C3—H3119.9
C4—C5—C6118.90 (16)N2—C14—H14A109.5
C4—C5—C10121.37 (17)N2—C14—H14B109.5
C1—C6—C5116.78 (15)N2—C14—H14C109.5
C7—C6—C5118.75 (16)H14A—C14—H14B109.5
C7—C6—C1124.40 (16)H14A—C14—H14C109.5
C6—C1—S1121.67 (13)H14B—C14—H14C109.5
C2—C1—S1116.02 (14)N2—C15—H15A109.5
C2—C1—C6122.00 (17)N2—C15—H15B109.5
N2—C10—C5118.17 (16)N2—C15—H15C109.5
C9—C10—N2123.36 (17)H15A—C15—H15B109.5
C9—C10—C5118.38 (17)H15A—C15—H15C109.5
C11—C12—H12120.1H15B—C15—H15C109.5
C13—C12—C11119.85 (18)C11—O1—S1117.7 (13)
C13—C12—H12120.1
S1—N1—C11—C11i124.2 (13)C6—C5—C4—C33.7 (3)
S1—N1—C11—C12−51.6 (18)C6—C1—C2—C31.1 (3)
S1—C1—C2—C3−172.60 (16)C6—C7—C8—C93.7 (3)
N1—S1—C1—C6−67.6 (10)C1—S1—N1—C11−66.4 (15)
N1—S1—C1—C2106.1 (10)C1—S1—O1—C11−48.7 (12)
N1—C11—C12—C13174.6 (11)C1—C6—C7—C8174.71 (18)
O2—S1—N1—C1147.5 (16)C1—C2—C3—C4−1.5 (3)
O2—S1—C1—C6175.57 (14)C10—C5—C6—C1−179.37 (15)
O2—S1—C1—C2−10.74 (18)C10—C5—C6—C7−2.3 (3)
O2—S1—O1—C1166.2 (11)C10—C5—C4—C3179.07 (19)
O3—S1—N1—C11177.9 (12)C10—C9—C8—C7−0.5 (3)
O3—S1—C1—C641.79 (17)C12—C11—O1—S1−72.7 (11)
O3—S1—C1—C2−144.52 (15)C7—C6—C1—S1−2.0 (2)
O3—S1—O1—C11−167.5 (9)C7—C6—C1—C2−175.27 (19)
N2—C10—C9—C8179.6 (2)C4—C5—C6—C1−4.0 (2)
C11i—C11—C12—C13−1.0 (3)C4—C5—C6—C7173.16 (17)
C11i—C11—O1—S1112.6 (11)C4—C5—C10—N26.6 (3)
C11—C12—C13—C13i−0.6 (4)C4—C5—C10—C9−170.03 (19)
C5—C6—C1—S1174.98 (12)C14—N2—C10—C566.8 (2)
C5—C6—C1—C21.7 (3)C14—N2—C10—C9−116.8 (2)
C5—C6—C7—C8−2.2 (3)C15—N2—C10—C5−159.33 (19)
C5—C10—C9—C8−4.0 (3)C15—N2—C10—C917.1 (3)
C5—C4—C3—C2−1.0 (3)O1—S1—C1—C6−71.5 (8)
C6—C5—C10—N2−178.08 (16)O1—S1—C1—C2102.2 (8)
C6—C5—C10—C95.3 (3)O1—C11—C12—C13−175.8 (9)
D—H···AD—HH···AD···AD—H···A
C7—H7···O30.932.373.030 (2)128
C13—H13···O3ii0.932.733.386 (2)129
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C7H7O30.932.373.030(2)128
C13H13O3i 0.932.733.386(2)129

Symmetry code: (i) .

  9 in total

1.  Synthesis and evaluation of a new fluorescent transglycosylase substrate: lipid II-based molecule possessing a dansyl-C20 polyprenyl moiety.

Authors:  Chen-Yu Liu; Chih-Wei Guo; Yi-Fan Chang; Jen-Tsung Wang; Hao-Wei Shih; Yu-Fang Hsu; Chia-Wei Chen; Shao-Kang Chen; Yen-Chih Wang; Ting-Jen R Cheng; Che Ma; Chi-Huey Wong; Jim-Min Fang; Wei-Chieh Cheng
Journal:  Org Lett       Date:  2010-04-02       Impact factor: 6.005

2.  Reaction of reactive sulfhydryl groups of creatine kinase with dansyl chloride.

Authors:  C S Brown; L W Cunningham
Journal:  Biochemistry       Date:  1970-09-29       Impact factor: 3.162

3.  Detection and identification of Cu2+ and Hg2+ based on the cross-reactive fluorescence responses of a dansyl-functionalized film in different solvents.

Authors:  Yuan Cao; Liping Ding; Shihuai Wang; Yuan Liu; Junmei Fan; Wenting Hu; Ping Liu; Yu Fang
Journal:  ACS Appl Mater Interfaces       Date:  2013-12-19       Impact factor: 9.229

4.  New fluorogenic dansyl-containing calix[4]arene in the partial cone conformation for highly sensitive and selective recognition of lead(II).

Authors:  Nicole M Buie; Vladimir S Talanov; Raymond J Butcher; Galina G Talanova
Journal:  Inorg Chem       Date:  2008-03-18       Impact factor: 5.165

5.  Fluorescence ratiometric selective recognition of Cu(2+) ions by dansyl-naphthalimide dyads.

Authors:  Vadakkancheril S Jisha; Anu J Thomas; Danaboyina Ramaiah
Journal:  J Org Chem       Date:  2009-09-04       Impact factor: 4.354

6.  N-(2-Amino-ethyl)-5-(dimethyl-amino)naphthalene-1-sulfonamide.

Authors:  Shi-Lei Zhang; Bi-Lin Zhao; Zhen-Hong Su; Xian-You Xia; Yong Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

7.  N-Benzyl-5-(dimethyl-amino)-naphthalene-1-sulfonamide.

Authors:  Pralav Bhatt; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

8.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

9.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  9 in total

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