Literature DB >> 26594441

Crystal structure of β-d,l-fructose.

Tomohiko Ishii1, Tatsuya Senoo1, Akihide Yoshihara2, Kazuhiro Fukada3, Genta Sakane4.   

Abstract

The title compound, C6H12O6, was crystallized from an aqueous solution of equimolar mixture of d- and l-fructose (1,3,4,5,6-penta-hydroxy-hexan-2-one, arabino-hexulose or levu-lose), and it was confirmed that d-fructose (or l-fructose) formed β-pyran-ose with a (2) C 5 (or (5) C 2) conformation. In the crystal, two O-H⋯O hydrogen bonds between the hy-droxy groups at the C-1 and C-3 positions, and at the C-4 and C-5 positions connect homochiral mol-ecules into a column along the a axis. The columns are linked by other O-H⋯O hydrogen bonds between d- and l-fructose mol-ecules, forming a three-dimensional network.

Entities:  

Keywords:  crystal structure; hydrogen bonding; racemic compound; rare sugar

Year:  2015        PMID: 26594441      PMCID: PMC4647344          DOI: 10.1107/S2056989015016503

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For crystal structures of chiral β-d-fructose, racemic β-d,l-allose and racemic β-d,l-psicose, see: Kanters et al. (1977 ▸); Ishii, Senoo et al. (2015 ▸); Ishii, Sakane et al. (2015 ▸), respectively. For the synthesis of chiral l-fructose, see: Itoh & Izumori (1996 ▸).

Experimental

Crystal data

C6H12O6 M = 180.16 Triclinic, a = 5.43124 (19) Å b = 7.2727 (3) Å c = 10.1342 (4) Å α = 69.120 (2)° β = 83.907 (2)° γ = 78.381 (2)° V = 366.09 (2) Å3 Z = 2 Cu Kα radiation μ = 1.30 mm−1 T = 296 K 0.10 × 0.10 × 0.10 mm

Data collection

Rigaku R-AXIS RAPID diffractometer Absorption correction: multi-scan (ABSCOR; Rigaku, 1995 ▸) T min = 0.729, T max = 0.878 6710 measured reflections 1329 independent reflections 1211 reflections with F 2 > 2.0σ(F 2) R int = 0.079

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.095 S = 1.08 1329 reflections 115 parameters H-atom parameters constrained Δρmax = 0.32 e Å−3 Δρmin = −0.23 e Å−3

Data collection: RAPID-AUTO (Rigaku, 2009 ▸); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SIR2011 (Burla et al., 2012 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2015 ▸); molecular graphics: CrystalStructure (Rigaku, 2014 ▸); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015016503/is5416sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015016503/is5416Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015016503/is5416Isup3.cml Click here for additional data file. ORTEP . DOI: 10.1107/S2056989015016503/is5416fig1.tif ORTEP view of the title compound with the atom-labeling scheme. The thermal ellipsoids of all non-hydrogen atoms are drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radius. Click here for additional data file. c . DOI: 10.1107/S2056989015016503/is5416fig2.tif Part of the packing diagram of the title compound viewed down the c-axis, showing the hydrogen-bonding network (green solid lines). Click here for additional data file. a . DOI: 10.1107/S2056989015016503/is5416fig3.tif Part of the packing diagram of the title compound viewed down the a-axis, showing the hydrogen-bonding network (green solid lines). CCDC reference: 1422317 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H12O6Z = 2
Mr = 180.16F(000) = 192.00
Triclinic, P1Dx = 1.634 Mg m3
a = 5.43124 (19) ÅCu Kα radiation, λ = 1.54187 Å
b = 7.2727 (3) ÅCell parameters from 4534 reflections
c = 10.1342 (4) Åθ = 4.7–68.4°
α = 69.120 (2)°µ = 1.30 mm1
β = 83.907 (2)°T = 296 K
γ = 78.381 (2)°Block, colorless
V = 366.09 (2) Å30.10 × 0.10 × 0.10 mm
Rigaku R-AXIS RAPID diffractometer1211 reflections with F2 > 2.0σ(F2)
Detector resolution: 10.000 pixels mm-1Rint = 0.079
ω scansθmax = 68.2°, θmin = 4.7°
Absorption correction: multi-scan (ABSCOR; Rigaku, 1995)h = −6→6
Tmin = 0.729, Tmax = 0.878k = −8→8
6710 measured reflectionsl = −12→12
1329 independent reflections
Refinement on F2Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.095w = 1/[σ2(Fo2) + (0.0374P)2 + 0.1404P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
1329 reflectionsΔρmax = 0.32 e Å3
115 parametersΔρmin = −0.23 e Å3
0 restraintsExtinction correction: SHELXL2013 (Sheldrick, 2015)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.125 (6)
Secondary atom site location: difference Fourier map
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt).
xyzUiso*/Ueq
O11.19555 (19)0.09152 (15)0.87814 (12)0.0325 (3)
O20.66671 (18)0.27440 (15)0.92243 (11)0.0287 (3)
O30.50386 (19)0.33842 (16)0.65941 (12)0.0294 (3)
O40.34223 (18)0.76120 (15)0.58108 (11)0.0264 (3)
O50.81908 (18)0.84537 (14)0.60893 (12)0.0290 (3)
O60.96847 (17)0.47716 (14)0.82413 (11)0.0223 (3)
C11.0136 (3)0.1818 (2)0.77318 (17)0.0265 (4)
C20.8236 (2)0.34747 (19)0.80373 (15)0.0195 (3)
C30.6557 (2)0.46432 (19)0.67791 (15)0.0190 (3)
C40.4906 (3)0.6455 (2)0.70256 (15)0.0200 (3)
C50.6558 (3)0.77295 (19)0.72899 (16)0.0223 (3)
C60.8182 (3)0.6457 (2)0.85210 (16)0.0254 (4)
H1A1.307790.158120.860620.0390*
H1C0.925940.080850.768110.0318*
H1B1.09760.236530.682080.0318*
H2A0.741360.169950.977160.0345*
H3A0.553670.310420.588470.0353*
H3B0.762160.50970.592440.0227*
H4A0.193530.753920.601780.0317*
H4B0.378320.600410.785450.0240*
H5A0.745520.949020.552850.0348*
H5B0.550620.88580.750580.0268*
H6A0.926690.725070.869230.0305*
H6B0.712310.599810.936330.0305*
U11U22U33U12U13U23
O10.0202 (6)0.0153 (5)0.0465 (8)−0.0003 (4)−0.0014 (5)0.0066 (5)
O20.0251 (6)0.0190 (5)0.0265 (6)0.0006 (4)0.0037 (5)0.0074 (4)
O30.0292 (6)0.0280 (6)0.0361 (7)−0.0153 (5)−0.0002 (5)−0.0118 (5)
O40.0160 (5)0.0236 (6)0.0298 (6)−0.0001 (4)−0.0051 (4)0.0019 (5)
O50.0208 (5)0.0154 (5)0.0385 (7)−0.0035 (4)−0.0014 (5)0.0060 (5)
O60.0186 (5)0.0164 (5)0.0309 (6)−0.0004 (4)−0.0061 (4)−0.0071 (4)
C10.0223 (7)0.0144 (7)0.0389 (9)−0.0022 (6)−0.0001 (6)−0.0054 (6)
C20.0176 (7)0.0123 (6)0.0242 (8)−0.0039 (5)0.0003 (6)−0.0007 (5)
C30.0177 (7)0.0140 (7)0.0233 (8)−0.0070 (5)−0.0006 (6)−0.0020 (6)
C40.0158 (7)0.0163 (7)0.0213 (8)−0.0018 (5)−0.0019 (6)0.0013 (6)
C50.0198 (7)0.0131 (7)0.0315 (9)−0.0005 (5)−0.0002 (6)−0.0060 (6)
C60.0272 (8)0.0199 (7)0.0304 (8)−0.0015 (6)−0.0044 (6)−0.0107 (6)
O1—C11.4153 (19)O1—H1A0.820
O2—C21.4017 (16)O2—H2A0.820
O3—C31.419 (2)O3—H3A0.820
O4—C41.4395 (16)O4—H4A0.820
O5—C51.4305 (17)O5—H5A0.820
O6—C21.423 (2)C1—H1C0.970
O6—C61.4298 (19)C1—H1B0.970
C1—C21.520 (2)C3—H3B0.980
C2—C31.5304 (19)C4—H4B0.980
C3—C41.521 (2)C5—H5B0.980
C4—C51.517 (2)C6—H6A0.970
C5—C61.5075 (19)C6—H6B0.970
C2—O6—C6113.25 (10)C4—O4—H4A109.467
O1—C1—C2111.97 (14)C5—O5—H5A109.473
O2—C2—O6111.23 (13)O1—C1—H1C109.215
O2—C2—C1112.44 (10)O1—C1—H1B109.220
O2—C2—C3107.69 (10)C2—C1—H1C109.218
O6—C2—C1105.55 (11)C2—C1—H1B109.221
O6—C2—C3109.06 (10)H1C—C1—H1B107.907
C1—C2—C3110.86 (13)O3—C3—H3B109.026
O3—C3—C2109.62 (10)C2—C3—H3B109.028
O3—C3—C4110.08 (11)C4—C3—H3B109.024
C2—C3—C4110.04 (13)O4—C4—H4B109.255
O4—C4—C3110.05 (13)C3—C4—H4B109.253
O4—C4—C5109.74 (10)C5—C4—H4B109.254
C3—C4—C5109.27 (11)O5—C5—H5B109.808
O5—C5—C4110.97 (14)C4—C5—H5B109.810
O5—C5—C6107.71 (11)C6—C5—H5B109.807
C4—C5—C6108.69 (11)O6—C6—H6A109.512
O6—C6—C5110.67 (14)O6—C6—H6B109.511
C1—O1—H1A109.469C5—C6—H6A109.511
C2—O2—H2A109.478C5—C6—H6B109.513
C3—O3—H3A109.476H6A—C6—H6B108.082
C2—O6—C6—C5−61.73 (13)C1—C2—C3—C4−172.62 (10)
C6—O6—C2—O2−58.74 (12)O3—C3—C4—O4−62.10 (13)
C6—O6—C2—C1179.03 (9)O3—C3—C4—C5177.33 (9)
C6—O6—C2—C359.88 (13)C2—C3—C4—O4176.97 (10)
O1—C1—C2—O2−68.49 (15)C2—C3—C4—C556.41 (12)
O1—C1—C2—O652.95 (13)O4—C4—C5—O5−58.98 (13)
O1—C1—C2—C3170.90 (9)O4—C4—C5—C6−177.25 (10)
O2—C2—C3—O3−57.21 (15)C3—C4—C5—O561.77 (12)
O2—C2—C3—C463.99 (14)C3—C4—C5—C6−56.50 (14)
O6—C2—C3—O3−178.02 (10)O5—C5—C6—O6−61.97 (15)
O6—C2—C3—C4−56.82 (13)C4—C5—C6—O658.34 (14)
C1—C2—C3—O366.18 (13)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O3i0.822.282.9202 (14)135
O2—H2A···O10.822.602.9721 (14)110
O2—H2A···O1ii0.821.932.7224 (13)161
O3—H3A···O4iii0.821.962.7831 (18)177
O4—H4A···O5iv0.822.012.7893 (13)158
O5—H5A···O4v0.822.052.8431 (12)163
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
O1H1AO3i 0.822.282.9202(14)135
O2H2AO1ii 0.821.932.7224(13)161
O3H3AO4iii 0.821.962.7831(18)177
O4H4AO5iv 0.822.012.7893(13)158
O5H5AO4v 0.822.052.8431(12)163

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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