Literature DB >> 26594411

Crystal structure of di-μ-isobutyrato-κ(4) O:O'-bis-[cis-di-chlorido-(dimethyl sulfoxide-κS)rhenium(III)].

Alexander A Golichenko1, Alexander V Shtemenko1.   

Abstract

The title compound, [Re2(C3H7COO)2Cl4{(CH3)2SO}2], comprises binuclear complex mol-ecules [Re-Re = 2.24502 (13) Å] involving cis-oriented double carboxyl-ate bridges, four equatorial chloride ions and two weakly bonded O atoms from dimethyl sulfoxide ligands in the axial positions at the Re(III) atoms. In the crystal, mol-ecules are linked into corrugated layers parallel to (101) by very weak C-H⋯Cl and C-H⋯O hydrogen-bonding inter-actions. C-H⋯Cl hydrogen bonding provides the links between layers to consolidate a three-dimensional framework.

Entities:  

Keywords:  alkyl­carboxyl­ate complex; cluster; crystal structure; hydrogen bonding; quadruple metal–metal bond; rhenium(III)

Year:  2015        PMID: 26594411      PMCID: PMC4647422          DOI: 10.1107/S2056989015017429

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Binuclear rhenium(III) clusters are classical complexes with a unique quadruple metalmetal bond (Cotton et al., 2005 ▸, Golichenko & Shtemenko, 2006 ▸). In our previous work we have shown that such compounds with chloride and alkyl­carboxyl­ate equatorial ligands exhibit anti­tumor, anti­radical and hepato- and nephroprotective biological activity with low toxicity (Dimitrov et al., 1978 ▸, Shtemenko et al., 2007 ▸, 2008 ▸, 2009 ▸, 2013 ▸). Labile axial ligands and equatorial chloride groups are the reactive centers in inter­actions with other chemical compounds and biological macromolecules in vitro and in vivo (Shtemenko et al., 2013 ▸). In this context, we present the synthesis and the structure of the title dirhenium(III) complex with isobutyrate equatorial ligands as biologically active groups, which can exhibit anti­tumor activity in the tetra­carboxyl­ate compound Re2(i-C3H7COO)4Cl2 (Shtemenko et al., 2007 ▸).

Structural commentary

The quadruple Re—Re bond [2.24502 (13) Å] is typical for related di­carboxyl­ato clusters (Cotton et al., 2005 ▸, Shtemenko et al., 2009 ▸) and the coordination of each of the rhenium ions also comprises two chlorides and two oxygen atoms of carboxyl­ate ligands (Fig. 1 ▸). The distorted octa­hedral coordination geometry of Re1 and Re2 is completed by weakly bonded oxygen atoms from dimethyl sulfoxide ligands [Re1—O6 = 2.3282 (15) and Re2—O5 = 2.3938 (15) Å], in trans-positions to the Re—Re bond. This may be compared with a similar weak binding of N- or O-donors, which is characteristic of di­carboxyl­atodirhenium compounds (Bera et al., 2003 ▸, Shtemenko et al., 2009 ▸, Golichenko et al., 2015 ▸).
Figure 1

The structure of cis-Re2Cl4{i-C3H7COO}2·2(CH3)2SO, showing displacement ellipsoids drawn at the 50% probability level. H atoms are shown as small spheres of arbitrary radii.

Supra­molecular features

Inter­molecular bonding is only very weak: it comprises distal, though relatively directional, C—H⋯O and C—H⋯Cl hydrogen-bond inter­actions between the methine- and methyl-H of the carboxyl­ate and DMSO ligands (Table 1 ▸). The shortest bonds found for the chloride acceptors are C6—H6⋯Cl3ii [C6⋯Cl3ii = 3.519 (2) Å; symmetry code (ii):  − x,  + y,  − z], which unite the mol­ecules into chains along the b axis (Fig. 2 ▸). The hydrogen bonds adopted by two methyl groups of DMSO mol­ecules (referenced by a sulfur atoms S2) assemble these chains into corrugated layers parallel to (101). A very weak bond of this type is found also between adjacent layers: C12⋯Cl2iii = 3.751 (3) Å; symmetry code (iii): − − x,  + y,  − z] (Table 1 ▸). The latter extends the structure into a third direction and provides the formation of a hydrogen-bonded framework.
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C11H11BO2i 0.982.403.324(3)156
C6H6Cl3ii 1.002.733.519(2)136
C12H12ACl2iii 0.982.823.751(3)159
C12H12BCl3i 0.982.823.760(3)161

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 2

A fragment of the structure, showing weak C—H⋯O and C—H⋯Cl hydrogen-bond inter­actions (dashed lines), which assemble the mol­ecules into corrugated layers parallel to (101). [Symmetry codes: (i) − + x,  − y,  + z; (ii)  − x,  + y,  − z.]

Synthesis and crystallization

[NBu4]2[Re2Cl8] (0.2 g, 0.175 mmol) was added to isobutyric acid (10 ml). The mixture was heated for 3 h in a water bath under an inert atmosphere. DMSO (0.5 ml) was then added to the resulting blue solution at room temperature. A dark-blue crystalline product (0.12 g, yield 81%) was obtained after 12 h, was collected by filtration and dried in air.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. All H were refined using a riding-model approximation, with C—H = 0.98–1.00 Å, and with U iso(H) = 1.2U eq(C) or 1.5U eq(C) for methyl H atoms. A rotating model was used for the methyl groups. Six outliers (2 6 1, 3 3 3, 4 3, 0 1 1, 3 4, 3 3 7) were omitted in the last cycles of refinement.
Table 2

Experimental details

Crystal data
Chemical formula[Re2(C4H7O2)2Cl4(C2H6OS)2]
M r 844.65
Crystal system, space groupMonoclinic, P21/n
Temperature (K)110
a, b, c ()10.5581(4), 14.7406(5), 15.6088(6)
()100.794(2)
V (3)2386.26(15)
Z 4
Radiation typeMo K
(mm1)10.78
Crystal size (mm)0.22 0.18 0.09
 
Data collection
DiffractometerSiemens SMART CCD area-detector
Absorption correctionMulti-scan (SADABS; Bruker, 2008)
T min, T max 0.133, 0.478
No. of measured, independent and observed [I > 2(I)] reflections93039, 14497, 11921
R int 0.040
(sin /)max (1)0.909
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.025, 0.049, 1.00
No. of reflections14497
No. of parameters243
H-atom treatmentH-atom parameters constrained
max, min (e 3)1.71, 1.14

Computer programs: APEX2 and SAINT (Bruker, 2008 ▸), SHELXS97 (Sheldrick 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), DIAMOND (Brandenburg, 1999 ▸) and WinGX (Farrugia, 2012 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015017429/rz5165sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017429/rz5165Isup2.hkl CCDC reference: 1425634 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Re2(C4H7O2)2Cl4(C2H6OS)2]F(000) = 1584
Mr = 844.65Dx = 2.351 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 10.5581 (4) ÅCell parameters from 9919 reflections
b = 14.7406 (5) Åθ = 2.4–39.0°
c = 15.6088 (6) ŵ = 10.78 mm1
β = 100.794 (2)°T = 110 K
V = 2386.26 (15) Å3Plate, blue
Z = 40.22 × 0.18 × 0.09 mm
Siemens SMART CCD area-detector diffractometer11921 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.040
phi and ω scansθmax = 40.2°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −19→18
Tmin = 0.133, Tmax = 0.478k = −25→26
93039 measured reflectionsl = −28→27
14497 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.025H-atom parameters constrained
wR(F2) = 0.049w = 1/[σ2(Fo2) + (0.0183P)2 + 1.7981P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.002
14497 reflectionsΔρmax = 1.71 e Å3
243 parametersΔρmin = −1.14 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Re1−0.06723 (2)0.17363 (2)0.27880 (2)0.01130 (2)
Re20.10986 (2)0.16371 (2)0.21905 (2)0.01147 (2)
Cl1−0.01954 (5)0.08982 (4)0.40554 (3)0.02107 (9)
Cl2−0.19965 (5)0.05974 (3)0.21084 (3)0.01810 (8)
Cl30.06421 (5)0.04494 (3)0.12210 (3)0.01726 (8)
Cl40.25202 (5)0.07759 (3)0.31739 (3)0.02151 (9)
S10.41251 (5)0.24240 (4)0.20176 (3)0.01935 (9)
S2−0.23871 (5)0.25929 (3)0.42297 (3)0.01756 (9)
O1−0.14493 (13)0.26371 (9)0.18365 (9)0.0142 (2)
O20.02927 (14)0.25241 (9)0.12399 (9)0.0145 (2)
O30.18421 (14)0.27603 (9)0.28722 (9)0.0159 (3)
O40.01121 (14)0.28533 (9)0.34802 (9)0.0158 (3)
O50.28531 (14)0.20575 (10)0.14988 (10)0.0189 (3)
O6−0.24413 (14)0.23612 (10)0.32675 (9)0.0189 (3)
C1−0.07803 (18)0.29012 (12)0.12848 (12)0.0133 (3)
C2−0.1181 (2)0.37225 (13)0.07331 (14)0.0181 (4)
H2−0.10900.35850.01200.022*
C3−0.2560 (2)0.40050 (17)0.07314 (17)0.0274 (5)
H3A−0.27880.45160.03300.041*
H3B−0.26470.41880.13210.041*
H3C−0.31380.34940.05420.041*
C4−0.0227 (3)0.44808 (16)0.1087 (2)0.0354 (6)
H4A0.06580.42600.11250.053*
H4B−0.03580.46620.16680.053*
H4C−0.03710.50040.06940.053*
C50.1204 (2)0.31512 (13)0.33854 (12)0.0152 (3)
C60.1796 (2)0.39547 (14)0.38935 (14)0.0197 (4)
H60.22830.43130.35180.024*
C70.0785 (3)0.4565 (2)0.4167 (2)0.0469 (8)
H7A0.01760.47640.36490.070*
H7B0.12060.50950.44760.070*
H7C0.03210.42290.45540.070*
C80.2750 (3)0.36103 (19)0.46883 (17)0.0337 (6)
H8A0.33800.32070.44950.051*
H8B0.22820.32760.50740.051*
H8C0.32000.41270.50040.051*
C90.4146 (3)0.36054 (17)0.1775 (2)0.0360 (6)
H9A0.40470.36890.11430.054*
H9B0.49680.38680.20650.054*
H9C0.34350.39080.19840.054*
C100.5306 (2)0.20667 (18)0.14113 (18)0.0291 (5)
H10A0.53670.14030.14250.044*
H10B0.61440.23290.16690.044*
H10C0.50570.22720.08060.044*
C11−0.3361 (3)0.17496 (16)0.46035 (17)0.0286 (5)
H11A−0.41910.17090.42000.043*
H11B−0.35080.19130.51860.043*
H11C−0.29220.11620.46310.043*
C12−0.3441 (3)0.35344 (17)0.42132 (18)0.0338 (6)
H12A−0.30870.40570.39500.051*
H12B−0.35290.36850.48110.051*
H12C−0.42890.33810.38700.051*
U11U22U33U12U13U23
Re10.01040 (3)0.01222 (3)0.01171 (3)−0.00114 (2)0.00320 (2)0.00002 (2)
Re20.00953 (3)0.01154 (3)0.01360 (3)0.00081 (2)0.00288 (2)0.00041 (2)
Cl10.0222 (2)0.0241 (2)0.0166 (2)−0.00111 (18)0.00305 (17)0.00674 (16)
Cl20.0161 (2)0.01640 (19)0.0219 (2)−0.00426 (15)0.00380 (17)−0.00305 (15)
Cl30.0169 (2)0.01521 (19)0.0201 (2)0.00138 (15)0.00460 (16)−0.00402 (14)
Cl40.0167 (2)0.0215 (2)0.0244 (2)0.00463 (17)−0.00088 (18)0.00541 (17)
S10.0130 (2)0.0223 (2)0.0230 (2)−0.00283 (17)0.00407 (18)−0.00136 (17)
S20.0194 (2)0.0189 (2)0.0162 (2)−0.00284 (17)0.00824 (17)−0.00281 (15)
O10.0120 (6)0.0153 (6)0.0159 (6)0.0000 (5)0.0041 (5)0.0022 (4)
O20.0133 (6)0.0153 (6)0.0157 (6)0.0025 (5)0.0048 (5)0.0026 (4)
O30.0136 (6)0.0161 (6)0.0186 (6)−0.0023 (5)0.0044 (5)−0.0023 (5)
O40.0156 (7)0.0163 (6)0.0162 (6)−0.0038 (5)0.0050 (5)−0.0034 (5)
O50.0108 (6)0.0225 (7)0.0238 (7)−0.0020 (5)0.0040 (5)−0.0011 (5)
O60.0164 (7)0.0255 (7)0.0167 (7)−0.0009 (5)0.0076 (5)−0.0038 (5)
C10.0134 (8)0.0128 (7)0.0135 (8)0.0015 (6)0.0022 (6)−0.0002 (5)
C20.0175 (9)0.0170 (8)0.0199 (9)0.0037 (7)0.0034 (7)0.0046 (6)
C30.0184 (10)0.0275 (11)0.0353 (13)0.0065 (8)0.0025 (9)0.0084 (9)
C40.0254 (12)0.0162 (10)0.0617 (18)−0.0007 (8)0.0004 (12)0.0048 (10)
C50.0161 (9)0.0132 (8)0.0155 (8)−0.0013 (6)0.0015 (7)−0.0012 (6)
C60.0206 (10)0.0179 (9)0.0204 (9)−0.0062 (7)0.0028 (7)−0.0044 (7)
C70.0375 (16)0.0298 (14)0.072 (2)−0.0008 (11)0.0079 (15)−0.0319 (14)
C80.0341 (14)0.0370 (14)0.0254 (12)−0.0122 (11)−0.0065 (10)−0.0026 (9)
C90.0340 (14)0.0203 (11)0.0549 (17)−0.0051 (10)0.0113 (13)−0.0022 (10)
C100.0134 (9)0.0340 (13)0.0412 (14)0.0010 (8)0.0083 (9)−0.0067 (10)
C110.0379 (14)0.0239 (11)0.0294 (12)−0.0072 (9)0.0206 (11)−0.0015 (8)
C120.0494 (17)0.0237 (11)0.0322 (13)0.0104 (11)0.0172 (12)−0.0002 (9)
Re1—O12.0459 (13)C3—H3C0.9800
Re1—O42.0565 (13)C4—H4A0.9800
Re1—Re22.2450 (1)C4—H4B0.9800
Re1—Cl12.3065 (5)C4—H4C0.9800
Re1—Cl22.3115 (5)C5—C61.495 (3)
Re1—O62.3282 (15)C6—C71.517 (4)
Re2—O22.0401 (13)C6—C81.531 (3)
Re2—O32.0437 (14)C6—H61.0000
Re2—Cl32.3052 (5)C7—H7A0.9800
Re2—Cl42.3147 (5)C7—H7B0.9800
Re2—O52.3938 (15)C7—H7C0.9800
S1—O51.5310 (15)C8—H8A0.9800
S1—C101.780 (2)C8—H8B0.9800
S1—C91.783 (3)C8—H8C0.9800
S2—O61.5308 (15)C9—H9A0.9800
S2—C121.776 (3)C9—H9B0.9800
S2—C111.780 (2)C9—H9C0.9800
O1—C11.273 (2)C10—H10A0.9800
O2—C11.276 (2)C10—H10B0.9800
O3—C51.276 (2)C10—H10C0.9800
O4—C51.268 (3)C11—H11A0.9800
C1—C21.500 (3)C11—H11B0.9800
C2—C31.514 (3)C11—H11C0.9800
C2—C41.536 (3)C12—H12A0.9800
C2—H21.0000C12—H12B0.9800
C3—H3A0.9800C12—H12C0.9800
C3—H3B0.9800
O1—Re1—O485.93 (6)C2—C3—H3C109.5
O1—Re1—Re289.58 (4)H3A—C3—H3C109.5
O4—Re1—Re289.18 (4)H3B—C3—H3C109.5
O1—Re1—Cl1164.51 (4)C2—C4—H4A109.5
O4—Re1—Cl188.65 (4)C2—C4—H4B109.5
Re2—Re1—Cl1104.857 (14)H4A—C4—H4B109.5
O1—Re1—Cl290.71 (4)C2—C4—H4C109.5
O4—Re1—Cl2166.43 (4)H4A—C4—H4C109.5
Re2—Re1—Cl2103.960 (13)H4B—C4—H4C109.5
Cl1—Re1—Cl291.189 (19)O4—C5—O3121.00 (17)
O1—Re1—O674.92 (5)O4—C5—C6120.74 (18)
O4—Re1—O677.45 (6)O3—C5—C6118.24 (18)
Re2—Re1—O6160.04 (4)C5—C6—C7111.87 (19)
Cl1—Re1—O689.75 (4)C5—C6—C8108.26 (18)
Cl2—Re1—O688.98 (4)C7—C6—C8111.1 (2)
O2—Re2—O385.80 (6)C5—C6—H6108.5
O2—Re2—Re189.66 (4)C7—C6—H6108.5
O3—Re2—Re189.97 (4)C8—C6—H6108.5
O2—Re2—Cl390.11 (4)C6—C7—H7A109.5
O3—Re2—Cl3165.87 (4)C6—C7—H7B109.5
Re1—Re2—Cl3103.544 (13)H7A—C7—H7B109.5
O2—Re2—Cl4164.60 (4)C6—C7—H7C109.5
O3—Re2—Cl487.76 (4)H7A—C7—H7C109.5
Re1—Re2—Cl4104.318 (15)H7B—C7—H7C109.5
Cl3—Re2—Cl492.789 (18)C6—C8—H8A109.5
O2—Re2—O576.03 (5)C6—C8—H8B109.5
O3—Re2—O576.76 (5)H8A—C8—H8B109.5
Re1—Re2—O5161.00 (4)C6—C8—H8C109.5
Cl3—Re2—O589.13 (4)H8A—C8—H8C109.5
Cl4—Re2—O588.89 (4)H8B—C8—H8C109.5
O5—S1—C10104.28 (10)S1—C9—H9A109.5
O5—S1—C9106.08 (12)S1—C9—H9B109.5
C10—S1—C997.94 (14)H9A—C9—H9B109.5
O6—S2—C12104.59 (11)S1—C9—H9C109.5
O6—S2—C11104.36 (10)H9A—C9—H9C109.5
C12—S2—C1198.71 (14)H9B—C9—H9C109.5
C1—O1—Re1119.46 (12)S1—C10—H10A109.5
C1—O2—Re2119.54 (12)S1—C10—H10B109.5
C5—O3—Re2119.74 (13)H10A—C10—H10B109.5
C5—O4—Re1120.10 (13)S1—C10—H10C109.5
S1—O5—Re2121.94 (8)H10A—C10—H10C109.5
S2—O6—Re1121.25 (8)H10B—C10—H10C109.5
O1—C1—O2121.00 (17)S2—C11—H11A109.5
O1—C1—C2120.20 (17)S2—C11—H11B109.5
O2—C1—C2118.55 (17)H11A—C11—H11B109.5
C1—C2—C3112.98 (18)S2—C11—H11C109.5
C1—C2—C4106.60 (17)H11A—C11—H11C109.5
C3—C2—C4111.48 (19)H11B—C11—H11C109.5
C1—C2—H2108.6S2—C12—H12A109.5
C3—C2—H2108.6S2—C12—H12B109.5
C4—C2—H2108.6H12A—C12—H12B109.5
C2—C3—H3A109.5S2—C12—H12C109.5
C2—C3—H3B109.5H12A—C12—H12C109.5
H3A—C3—H3B109.5H12B—C12—H12C109.5
D—H···AD—HH···AD···AD—H···A
C11—H11B···O2i0.982.403.324 (3)156
C6—H6···Cl3ii1.002.733.519 (2)136
C12—H12A···Cl2iii0.982.823.751 (3)159
C12—H12B···Cl3i0.982.823.760 (3)161
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