Literature DB >> 26593024

The Effect of Temperature, Cations, and Number of Acyl Chains on the Lamellar to Non-Lamellar Transition in Lipid-A Membranes: A Microscopic View.

Frederico J S Pontes1, Victor H Rusu1, Thereza A Soares1, Roberto D Lins1.   

Abstract

Lipopolysaccharides (LPS) are the main constituent of the outer bacterial membrane of Gram-negative bacteria. Lipid-A is the structural region of LPS that interacts with the innate immune system and induces inflammatory responses. It is formed by a phosphorylated β-d-glucosaminyl-(1→6)-α-N-glucosamine disaccharide backbone containing ester-linked and amide-linked long-chain fatty acids, which may vary in length and number depending on the bacterial strains and the environment. Phenotypical variation (i.e., number of acyl chains), cation type, and temperature influence the phase transition, aggregate structure, and endotoxic activity of Lipid-A. We have applied an extension of the GROMOS force field 45a4 carbohydrate parameter set to investigate the behavior of hexa- and pentaacylated Lipid-A of Pseudomonas aeruginosa at two temperatures (300 and 328 K) and in the presence of mono- and divalent cations (represented by Ca(2+) and Na(+), respectively) through molecular dynamics simulations. The distinct phase of Lipid-A aggregates was characterized by structural properties, deuterium order parameters, the molecular shape of the lipid units (conical versus cylindrical), and molecular packing. Our results show that Na(+) ions induce a transition from the lamellar to nonlamellar phase. In contrast, the bilayer integrity is maintained in the presence of Ca(2+) ions. Through these findings, we present microscopic insights on the influence of different cations on the molecular behavior of Lipid-A associated with the lamellar to nonlamellar transition.

Entities:  

Year:  2012        PMID: 26593024     DOI: 10.1021/ct300084v

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  12 in total

1.  Molecular dynamics modeling of Pseudomonas aeruginosa outer membranes.

Authors:  Ao Li; Jeffrey W Schertzer; Xin Yong
Journal:  Phys Chem Chem Phys       Date:  2018-09-19       Impact factor: 3.676

2.  Lipopolysaccharide Simulations Are Sensitive to Phosphate Charge and Ion Parameterization.

Authors:  Amy Rice; Mary T Rooney; Alexander I Greenwood; Myriam L Cotten; Jeff Wereszczynski
Journal:  J Chem Theory Comput       Date:  2020-02-26       Impact factor: 6.006

3.  Atomistic Scale Effects of Lipopolysaccharide Modifications on Bacterial Outer Membrane Defenses.

Authors:  Amy Rice; Jeff Wereszczynski
Journal:  Biophys J       Date:  2018-03-27       Impact factor: 4.033

4.  Modeling the electrostatic potential of asymmetric lipopolysaccharide membranes: the MEMPOT algorithm implemented in DelPhi.

Authors:  Roberta P Dias; Lin Lin; Thereza A Soares; Emil Alexov
Journal:  J Comput Chem       Date:  2014-05-06       Impact factor: 3.376

5.  Molecular dynamics and NMR spectroscopy studies of E. coli lipopolysaccharide structure and dynamics.

Authors:  Emilia L Wu; Olof Engström; Sunhwan Jo; Danielle Stuhlsatz; Min Sun Yeom; Jeffery B Klauda; Göran Widmalm; Wonpil Im
Journal:  Biophys J       Date:  2013-09-17       Impact factor: 4.033

6.  Molecular dynamics simulations informed by membrane lipidomics reveal the structure-interaction relationship of polymyxins with the lipid A-based outer membrane of Acinetobacter baumannii.

Authors:  Xukai Jiang; Kai Yang; Bing Yuan; Meiling Han; Yan Zhu; Kade D Roberts; Nitin A Patil; Jingliang Li; Bin Gong; Robert E W Hancock; Tony Velkov; Falk Schreiber; Lushan Wang; Jian Li
Journal:  J Antimicrob Chemother       Date:  2020-12-01       Impact factor: 5.790

7.  Outer Membranes of Polymyxin-Resistant Acinetobacter baumannii with Phosphoethanolamine-Modified Lipid A and Lipopolysaccharide Loss Display Different Atomic-Scale Interactions with Polymyxins.

Authors:  Xukai Jiang; Kai Yang; Mei-Ling Han; Bing Yuan; Jingliang Li; Bin Gong; Tony Velkov; Falk Schreiber; Lushan Wang; Jian Li
Journal:  ACS Infect Dis       Date:  2020-09-15       Impact factor: 5.084

8.  Branched Peptide, B2088, Disrupts the Supramolecular Organization of Lipopolysaccharides and Sensitizes the Gram-negative Bacteria.

Authors:  Rajamani Lakshminarayanan; Wei Xiang Tan; Thet Tun Aung; Eunice Tze Leng Goh; Nandhakumar Muruganantham; Jianguo Li; Jamie Ya Ting Chang; Neha Dikshit; Padmanabhan Saraswathi; Rayne Rui Lim; Tse Siang Kang; Vanniarajan Balamuralidhar; Bindu Sukumaran; Chandra S Verma; Jayaraman Sivaraman; Shyam Sunder Chaurasia; Shouping Liu; Roger W Beuerman
Journal:  Sci Rep       Date:  2016-05-13       Impact factor: 4.379

9.  Out of Sight, Out of Mind: The Effect of the Equilibration Protocol on the Structural Ensembles of Charged Glycolipid Bilayers.

Authors:  Andresa Messias; Denys E S Santos; Frederico J S Pontes; Filipe S Lima; Thereza A Soares
Journal:  Molecules       Date:  2020-11-04       Impact factor: 4.411

Review 10.  Three-Dimensional Structures of Carbohydrates and Where to Find Them.

Authors:  Sofya I Scherbinina; Philip V Toukach
Journal:  Int J Mol Sci       Date:  2020-10-18       Impact factor: 5.923

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