Literature DB >> 26592945

Applications of high dimensionality experiments to biomolecular NMR.

Michał Nowakowski1, Saurabh Saxena1, Jan Stanek1, Szymon Żerko1, Wiktor Koźmiński2.   

Abstract

High dimensionality NMR experiments facilitate resonance assignment and precise determination of spectral parameters such as coupling constants. Sparse non-uniform sampling enables acquisition of experiments of high dimensionality with high resolution in acceptable time. In this review we present and compare some significant applications of NMR experiments of dimensionality higher than three in the field of biomolecular studies in solution.
Copyright © 2015 Elsevier B.V. All rights reserved.

Keywords:  NMR spectroscopy; Non-uniform sampling; Proteins; RNA; Sparse sampling

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Year:  2015        PMID： 26592945     DOI： 10.1016/j.pnmrs.2015.07.001

Source DB:  PubMed          Journal:  Prog Nucl Magn Reson Spectrosc        ISSN： 0079-6565            Impact factor:   9.795


  10 in total

1.  Non-Uniform Sampling in NMR Spectroscopy and the Preservation of Spectral Knowledge in the Time and Frequency Domains.

Authors:  Manpreet Kaur; Callie M Lewis; Aaron Chronister; Gabriel S Phun; Leonard J Mueller
Journal:  J Phys Chem A       Date:  2020-06-18       Impact factor: 2.781

2.  Choice of Force Field for Proteins Containing Structured and Intrinsically Disordered Regions.

Authors:  Vojtěch Zapletal; Arnošt Mládek; Kateřina Melková; Petr Louša; Erik Nomilner; Zuzana Jaseňáková; Vojtěch Kubáň; Markéta Makovická; Alice Laníková; Lukáš Žídek; Jozef Hritz
Journal:  Biophys J       Date:  2020-02-29       Impact factor: 4.033

3.  Sparse multidimensional iterative lineshape-enhanced (SMILE) reconstruction of both non-uniformly sampled and conventional NMR data.

Authors:  Jinfa Ying; Frank Delaglio; Dennis A Torchia; Ad Bax
Journal:  J Biomol NMR       Date:  2016-11-19       Impact factor: 2.835

4.  Amino acid recognition for automatic resonance assignment of intrinsically disordered proteins.

Authors:  Alessandro Piai; Leonardo Gonnelli; Isabella C Felli; Roberta Pierattelli; Krzysztof Kazimierczuk; Katarzyna Grudziąż; Wiktor Koźmiński; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2016-02-18       Impact factor: 2.835

5.  Five and four dimensional experiments for robust backbone resonance assignment of large intrinsically disordered proteins: application to Tau3x protein.

Authors:  Szymon Żerko; Piotr Byrski; Paweł Włodarczyk-Pruszyński; Michał Górka; Karin Ledolter; Eliezer Masliah; Robert Konrat; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2016-07-18       Impact factor: 2.835

6.  Increasing the Chemical-Shift Dispersion of Unstructured Proteins with a Covalent Lanthanide Shift Reagent.

Authors:  Christoph Göbl; Moritz Resch; Madeleine Strickland; Christoph Hartlmüller; Martin Viertler; Nico Tjandra; Tobias Madl
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-20       Impact factor: 15.336

7.  Reconstruction of non-uniformly sampled five-dimensional NMR spectra by signal separation algorithm.

Authors:  Krzysztof Kosiński; Jan Stanek; Michał J Górka; Szymon Żerko; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2017-02-28       Impact factor: 2.835

Review 8.  15N labeling and analysis of 13C-15N and 1H-15N couplings in studies of the structures and chemical transformations of nitrogen heterocycles.

Authors:  Sergey L Deev; Igor A Khalymbadzha; Tatyana S Shestakova; Valery N Charushin; Oleg N Chupakhin
Journal:  RSC Adv       Date:  2019-08-28       Impact factor: 4.036

9.  Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins.

Authors:  Szymon Żerko; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2015-09-24       Impact factor: 2.835

10.  High resolution 4D HPCH experiment for sequential assignment of (13)C-labeled RNAs via phosphodiester backbone.

Authors:  Saurabh Saxena; Jan Stanek; Mirko Cevec; Janez Plavec; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2015-09-26       Impact factor: 2.835
  10 in total

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