Literature DB >> 26592279

Reconsidering Dispersion Potentials: Reduced Cutoffs in Mesh-Based Ewald Solvers Can Be Faster Than Truncation.

Rolf E Isele-Holder1, Wayne Mitchell1,2, Jeff R Hammond3, Axel Kohlmeyer4, Ahmed E Ismail1.   

Abstract

Long-range dispersion interactions have a critical influence on physical quantities in simulations of inhomogeneous systems. However, the perceived computational overhead of long-range solvers has until recently discouraged their implementation in molecular dynamics packages. Here, we demonstrate that reducing the cutoff radius for local interactions in the recently introduced particle-particle particle-mesh (PPPM) method for dispersion [Isele-Holder et al., J. Chem. Phys., 2012, 137, 174107] can actually often be faster than truncating dispersion interactions. In addition, because all long-range dispersion interactions are incorporated, physical inaccuracies that arise from truncating the potential can be avoided. Simulations using PPPM or other mesh Ewald solvers for dispersion can provide results more accurately and more efficiently than simulations that truncate dispersion interactions. The use of mesh-based approaches for dispersion is now a viable alternative for all simulations containing dispersion interactions and not merely those where inhomogeneities were motivating factors for their use. We provide a set of parameters for the dispersion PPPM method using either ik or analytic differentiation that we recommend for future use and demonstrate increased simulation efficiency by using the long-range dispersion solver in a series of performance tests on massively parallel computers.

Year:  2013        PMID: 26592279     DOI: 10.1021/ct4004614

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  4 in total

1.  Comparison of Additive and Polarizable Models with Explicit Treatment of Long-Range Lennard-Jones Interactions Using Alkane Simulations.

Authors:  Alison N Leonard; Andrew C Simmonett; Frank C Pickard; Jing Huang; Richard M Venable; Jeffery B Klauda; Bernard R Brooks; Richard W Pastor
Journal:  J Chem Theory Comput       Date:  2018-01-09       Impact factor: 6.006

2.  Sparsification of long range force networks for molecular dynamics simulations.

Authors:  Peter Woerner; Aditya G Nair; Kunihiko Taira; William S Oates
Journal:  PLoS One       Date:  2019-04-12       Impact factor: 3.240

3.  Interfacial Properties of Hydrophobic Deep Eutectic Solvents with Water.

Authors:  Hirad S Salehi; Othonas A Moultos; Thijs J H Vlugt
Journal:  J Phys Chem B       Date:  2021-10-31       Impact factor: 2.991

4.  Thermodynamic and Transport Properties of Tetrabutylphosphonium Hydroxide and Tetrabutylphosphonium Chloride-Water Mixtures via Molecular Dynamics Simulation.

Authors:  Brad Crawford; Ahmed E Ismail
Journal:  Polymers (Basel)       Date:  2020-01-20       Impact factor: 4.329

  4 in total

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