Literature DB >> 26589018

Accounting for Finite-Number Effects on Cluster Size Distributions in Simulations of Equilibrium Aggregation.

James T Kindt1.   

Abstract

An approach is given to analyze aggregate size distributions obtained from simulations of a fixed number N of monomers undergoing reversible self-assembly. Equilibrium distributions are derived from size-dependent equilibrium association constants by appropriately weighted sums over all partitions of N monomers into aggregates. Conversely, equilibrium association constants can be obtained from an iterative fit to a finite-N equilibrium distribution. Model data for a micelle-forming system are used to show how results from simulations containing few micelles can yield infinite-N limiting distributions. A strategy is also suggested to exploit small-N effects on aggregate size distributions to enhance sampling of critical clusters in determination of nucleation free energy functions.

Year:  2012        PMID: 26589018     DOI: 10.1021/ct300686u

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  2 in total

1.  Finite-Size Effects in Simulations of Peptide/Lipid Assembly.

Authors:  Zack Jarin; Olivia Agolini; Richard W Pastor
Journal:  J Membr Biol       Date:  2022-07-19       Impact factor: 2.426

2.  Anatomy and formation mechanisms of early amyloid-β oligomers with lateral branching: graph network analysis on large-scale simulations.

Authors:  Miao Yuan; Xuan Tang; Wei Han
Journal:  Chem Sci       Date:  2022-02-08       Impact factor: 9.825

  2 in total

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