Literature DB >> 26588758

Exploring the Conical Intersection Seam: The Seam Space Nudged Elastic Band Method.

Toshifumi Mori1,2, Todd J Martínez1,2.   

Abstract

Conical intersections (CIs) play a fundamental role in photoreactions. Although it is widely known that CIs are not isolated points but rather multidimensional seams, there is a dearth of techniques to explore and characterize these seams beyond the immediate vicinity of minimum energy points within the intersection space (minimum energy conical intersections or MECIs). Here, we develop a method that connects these MECIs by minimal energy paths within the space of geometries that maintain the electronic degeneracy (the "seam space") in order to obtain a more general picture of a CI seam. This method, the seam space nudged elastic band (SS-NEB) method, combines the nudged elastic band method with gradient projected MECI optimization. It provides a very efficient way of finding minimum energy seam paths in the conical intersection seam. The method is demonstrated by application to two molecules: ethylene and the green fluorescent protein (GFP) chromophore. The results show that previously known MECIs for these molecules are connected within a single seam, adding further support to previous conjectures that all MECIs are topologically connected in the seam space. Analysis of the nonadiabatic dynamics further suggests that a broad range of seam geometries, not only the vicinity of MECIs, is involved in the nonadiabatic transition events. The current method provides a tool to characterize CI seams in different environments and to explore the importance of the seam in the dynamics.

Entities:  

Year:  2013        PMID: 26588758     DOI: 10.1021/ct300892t

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  6 in total

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Authors:  Shijie Li; Xiaopeng Tan; Hui Li; Yan Gao; Qian Wang; Guoning Li; Min Guo
Journal:  Sci Rep       Date:  2022-06-16       Impact factor: 4.996

2.  Discovery of conical intersection mediated photochemistry with growing string methods.

Authors:  Cody Aldaz; Joshua A Kammeraad; Paul M Zimmerman
Journal:  Phys Chem Chem Phys       Date:  2018-11-07       Impact factor: 3.676

3.  Assessment of Density Functional Methods for Obtaining Geometries at Conical Intersections in Organic Molecules.

Authors:  Michael Filatov
Journal:  J Chem Theory Comput       Date:  2013-09-06       Impact factor: 6.006

Review 4.  Mathematical and computational modeling in biology at multiple scales.

Authors:  Jack A Tuszynski; Philip Winter; Diana White; Chih-Yuan Tseng; Kamlesh K Sahu; Francesco Gentile; Ivana Spasevska; Sara Ibrahim Omar; Niloofar Nayebi; Cassandra Dm Churchill; Mariusz Klobukowski; Rabab M Abou El-Magd
Journal:  Theor Biol Med Model       Date:  2014-12-27       Impact factor: 2.432

5.  A new twist in the photophysics of the GFP chromophore: a volume-conserving molecular torsion couple.

Authors:  Jamie Conyard; Ismael A Heisler; Yohan Chan; Philip C Bulman Page; Stephen R Meech; Lluís Blancafort
Journal:  Chem Sci       Date:  2018-01-10       Impact factor: 9.825

6.  Internal conversion of the anionic GFP chromophore: in and out of the I-twisted S1/S0 conical intersection seam.

Authors:  Nanna H List; Chey M Jones; Todd J Martínez
Journal:  Chem Sci       Date:  2021-12-08       Impact factor: 9.825

  6 in total

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