Literature DB >> 26588269

Reaction Path Following with Sparse Interpolation.

James Nance1, Elena Jakubikova1, C T Kelley1.   

Abstract

Computing the potential energy of an N-atom molecule is an expensive optimization process of 3N - 6 molecular coordinates, so following reaction pathways as a function of all 3N - 6 coordinates is unfeasible for large molecules. In this paper, we present a method that isolates d < 3N - 6 molecular coordinates and continuously follows reaction paths on d-dimensional potential energy surfaces approximated by a Smolyak's sparse grid interpolation algorithm.1 Compared to dense grids, sparse grids efficiently improve the ratio of invested storage and computing time to approximation accuracy and thus allow one to increase the number of coordinates d in molecular reaction path following simulations. Furthermore, evaluation of the interpolant is much less expensive than the evaluation of the actual energy function, so our technique offers a computationally efficient way to simulate reaction paths on ground and excited state potential energy surfaces. To demonstrate the capabilities of our method, we present simulation results for the isomerization of 2-butene with two, three, and six degrees of freedom.

Entities:  

Year:  2014        PMID: 26588269     DOI: 10.1021/ct5004669

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  1 in total

1.  Kudi: A free open-source python library for the analysis of properties along reaction paths.

Authors:  Stefan Vogt-Geisse
Journal:  J Mol Model       Date:  2016-04-23       Impact factor: 1.810

  1 in total

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