Literature DB >> 26588145

Charge Anisotropy: Where Atomic Multipoles Matter Most.

Christian Kramer1, Alexander Spinn1, Klaus R Liedl1.   

Abstract

Specific intermolecular interactions are largely guided by electrostatics. However, the most common model for electrostatic interactions-atomic point charges-fails to reproduce anisotropic charge distributions, such as lone pairs and sigma holes. Although this has long been known, point charges are still widely used in chemical modeling and reasoning. In this contribution, we analyze the deficiency of atomic point charges in reproducing the electrostatic potential (ESP) around molecules and find that multipole moments up to quadrupoles can, with a much lower error than point charges, reproduce the relevant ESP for all cases. Mapping the surface to the closest atom allows to compare ESP errors between atom types and to identify cases with the most urgent need for atomic multipoles. Our analysis shows that almost all heteroatoms require multipoles to correctly describe their charge distribution, with the most serious cases being nitrogen, sulfur, and halogens. Comparison with small molecule crystallography data studies supports our findings and emphasizes the need for incorporating anisotropic charge descriptions in chemical models. The scheme introduced here can be used to identify anisotropic binding preferences for atom types where there is too little coverage in crystal structure databases.

Entities:  

Year:  2014        PMID: 26588145     DOI: 10.1021/ct5005565

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  12 in total

1.  LICHEM: A QM/MM program for simulations with multipolar and polarizable force fields.

Authors:  Eric G Kratz; Alice R Walker; Louis Lagardère; Filippo Lipparini; Jean-Philip Piquemal; G Andrés Cisneros
Journal:  J Comput Chem       Date:  2016-01-18       Impact factor: 3.376

2.  Improved Description of Sulfur Charge Anisotropy in OPLS Force Fields: Model Development and Parameterization.

Authors:  Xin Cindy Yan; Michael J Robertson; Julian Tirado-Rives; William L Jorgensen
Journal:  J Phys Chem B       Date:  2017-06-29       Impact factor: 2.991

3.  Long-range electrostatic corrections in multipolar/polarizable QM/MM simulations.

Authors:  Eric G Kratz; Robert E Duke; G Andrés Cisneros
Journal:  Theor Chem Acc       Date:  2016-06-17       Impact factor: 1.702

4.  Evaluation of CM5 Charges for Nonaqueous Condensed-Phase Modeling.

Authors:  Leela S Dodda; Jonah Z Vilseck; Kara J Cutrona; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2015-08-27       Impact factor: 6.006

5.  Building Water Models: A Different Approach.

Authors:  Saeed Izadi; Ramu Anandakrishnan; Alexey V Onufriev
Journal:  J Phys Chem Lett       Date:  2014-10-16       Impact factor: 6.475

6.  Biomolecular Force Field Parameterization via Atoms-in-Molecule Electron Density Partitioning.

Authors:  Daniel J Cole; Jonah Z Vilseck; Julian Tirado-Rives; Mike C Payne; William L Jorgensen
Journal:  J Chem Theory Comput       Date:  2016-04-21       Impact factor: 6.006

7.  Polarizable Multipole-Based Force Field for Aromatic Molecules and Nucleobases.

Authors:  Changsheng Zhang; David Bell; Matthew Harger; Pengyu Ren
Journal:  J Chem Theory Comput       Date:  2017-01-13       Impact factor: 6.006

8.  Combining Molecular Dynamic Information and an Aspherical-Atom Data Bank in the Evaluation of the Electrostatic Interaction Energy in Multimeric Protein-Ligand Complex: A Case Study for HIV-1 Protease.

Authors:  Prashant Kumar; Paulina Maria Dominiak
Journal:  Molecules       Date:  2021-06-24       Impact factor: 4.411

9.  Realistic sampling of amino acid geometries for a multipolar polarizable force field.

Authors:  Timothy J Hughes; Salvatore Cardamone; Paul L A Popelier
Journal:  J Comput Chem       Date:  2015-08-03       Impact factor: 3.376

10.  Challenges in the use of atomistic simulations to predict solubilities of drug-like molecules.

Authors:  Guilherme Duarte Ramos Matos; David L Mobley
Journal:  F1000Res       Date:  2018-05-31
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