Literature DB >> 26587640

Stochastic Surface Walking Method for Structure Prediction and Pathway Searching.

Cheng Shang1, Zhi-Pan Liu1.   

Abstract

We propose an unbiased general-purpose potential energy surface (PES) searching method for both the structure and the pathway prediction of a complex system. The method is based on the idea of bias-potential-driven dynamics and Metropolis Monte Carlo. A central feature of the method is able to perturb smoothly a structural configuration toward a new configuration and simultaneously has the ability to surmount the high barrier in the path. We apply the method for locating the global minimum (GM) of short-ranged Morse clusters up to 103 atoms starting from a random structure without using extra information from the system. In addition to GM searching, the method can identify the pathways for chemical reactions with large dimensionality, as demonstrated in a nanohelix transformation containing 222 degrees of freedoms.

Entities:  

Year:  2013        PMID: 26587640     DOI: 10.1021/ct301010b

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  12 in total

1.  Observation of an all-boron fullerene.

Authors:  Hua-Jin Zhai; Ya-Fan Zhao; Wei-Li Li; Qiang Chen; Hui Bai; Han-Shi Hu; Zachary A Piazza; Wen-Juan Tian; Hai-Gang Lu; Yan-Bo Wu; Yue-Wen Mu; Guang-Feng Wei; Zhi-Pan Liu; Jun Li; Si-Dian Li; Lai-Sheng Wang
Journal:  Nat Chem       Date:  2014-07-13       Impact factor: 24.427

2.  Artificial intelligence pathway search to resolve catalytic glycerol hydrogenolysis selectivity.

Authors:  Pei-Lin Kang; Yun-Fei Shi; Cheng Shang; Zhi-Pan Liu
Journal:  Chem Sci       Date:  2022-06-20       Impact factor: 9.969

3.  Three-phase junction for modulating electron-hole migration in anatase-rutile photocatalysts.

Authors:  Wei-Na Zhao; Sheng-Cai Zhu; Ye-Fei Li; Zhi-Pan Liu
Journal:  Chem Sci       Date:  2015-04-07       Impact factor: 9.825

4.  Material discovery by combining stochastic surface walking global optimization with a neural network.

Authors:  Si-Da Huang; Cheng Shang; Xiao-Jie Zhang; Zhi-Pan Liu
Journal:  Chem Sci       Date:  2017-06-30       Impact factor: 9.825

5.  Efficient prediction of reaction paths through molecular graph and reaction network analysis.

Authors:  Yeonjoon Kim; Jin Woo Kim; Zeehyo Kim; Woo Youn Kim
Journal:  Chem Sci       Date:  2017-12-12       Impact factor: 9.825

6.  Restructuring and Hydrogen Evolution on Pt Nanoparticle.

Authors:  Guang-Feng Wei; Zhi-Pan Liu
Journal:  Chem Sci       Date:  2014-11-26       Impact factor: 9.825

7.  Accelerated active phase transformation of NiO powered by Pt single atoms for enhanced oxygen evolution reaction.

Authors:  Chao Lin; Yonghui Zhao; Haojie Zhang; Songhai Xie; Ye-Fei Li; Xiaopeng Li; Zheng Jiang; Zhi-Pan Liu
Journal:  Chem Sci       Date:  2018-07-16       Impact factor: 9.825

Review 8.  Reaction prediction via atomistic simulation: from quantum mechanics to machine learning.

Authors:  Pei-Lin Kang; Zhi-Pan Liu
Journal:  iScience       Date:  2020-12-30

9.  First-Principles Calculations to Investigate the Influence of Irradiation Defects on the Swelling Behavior of Fe-13Cr Alloys.

Authors:  Yi-Yu Hu; Yao-Ping Xie; Lu Wu; Jian-Tao Qin; Rong-Jian Pan; Mei-Yi Yao
Journal:  Materials (Basel)       Date:  2022-02-08       Impact factor: 3.623

10.  Thermodynamic rules for zeolite formation from machine learning based global optimization.

Authors:  Sicong Ma; Cheng Shang; Chuan-Ming Wang; Zhi-Pan Liu
Journal:  Chem Sci       Date:  2020-09-02       Impact factor: 9.825

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