| Literature DB >> 26587033 |
Asadollah Mohammadi1, Nader Tajik1, Alireza Shah-Hosseini1, Seyed Moayed Alavian2, Zohreh Sharifi3, Lida Jarahi4.
Abstract
BACKGROUND: The FAS and FAS-Ligand (FASL) system is an important apoptosis pathway in the liver. The FAS-mediated pathway functions by binding the FASL on the activated cytotoxic T lymphocytes and Natural Killer (NK) cells to the FAS receptor on infected hepatocytes. FAS and FASL polymorphisms, which are related to apoptosis, might influence the outcome of Hepatitis B Virus (HBV) infection.Entities:
Keywords: FAS; FAS Ligand; Hepatitis B Virus Infection; Polymorphism
Year: 2015 PMID: 26587033 PMCID: PMC4644599 DOI: 10.5812/hepatmon.26490
Source DB: PubMed Journal: Hepat Mon ISSN: 1735-143X Impact factor: 0.660
FAS and FASL Promoter Single Nucleotide Polymorphism (SNP) Genotyping
| Location | Primer Sequences (5’ → 3’) | Annealing Temperature Tm, °C | PCR Product, bp | Restriction Enzyme | Genotype |
|---|---|---|---|---|---|
|
| 61 | 193 | ScrFI | AA: 193 bp; AG: 193 + 136 + 57 bp; GG: 136 + 57 bp | |
| F | ATAGCTGGGGCTATGCGATT | ||||
| R | CATTTGACTGGGCTGTCCAT | ||||
|
| 61 | 122 | BstUI | GG: 104 + 18 bp; GA: 122 + 104 + 18 bp; AA: 122 bp | |
| F | TGTGTGCACAAGGCTGGCGC | ||||
| R | GCATCTGTCACTGCACTTACCACCA | ||||
|
| 61 | 401 | BsrDI | CC: 233 + 168 bp; CT:401 + 233 + 168 bp; TT: 401 bp | |
| F | CAGCTACTCGGAGGCCAAG | ||||
| R | GCTCTGAGGGGAGAGACCAT |
Genotype and Allele Frequencies of FAS-670, FAS-1377 and FASL-844
| Genotypes and Alleles | Controls (n = 100) | Patients With HBV (n = 125) | P-Value | OR | 95% CI |
|---|---|---|---|---|---|
|
| |||||
| AA | 27 (27.0%) | 40 (32.0%) | 1.0 | 1.0 | |
| AG | 51 (51.0%) | 69 (55.2%) | 0.67 | 0.88 | 0.49 - 1.58 |
| GG | 22 (22.0%) | 16 (12.8%) | 0.16 | 0.58 | 0.27 - 1.24 |
| AG + GG | 73 (73.0%) | 85 (68.0%) | 0.50 | 0.80 | 0.41 - 1.53 |
|
| |||||
| A | 105 (52.5%) | 149 (59.6%) | 1.0 | 1.0 | |
| G | 95 (47.5%) | 101 (40.4%) | 0.13 | 0.78 | 0.54 - 1.11 |
|
| |||||
|
| |||||
| GG | 72 (72.0%) | 90 (72.0%) | 1.0 | 1.0 | |
| GA | 25 (25.0%) | 33 (26.4%) | 0.76 | 1.09 | 0.61 - 1.95 |
| AA | 3 (3.0%) | 2 (1.6%) | 0.38 | 0.44 | 0.07 - 2.72 |
| GA + AA | 28 (28.0%) | 35 (28.0%) | 0.93 | 1.02 | 0.58 - 1.79 |
|
| |||||
| G | 169 (84.5%) | 213 (85.2%) | 1.0 | 1.0 | |
| A | 31 (15.5%) | 37 (14.8%) | 0.83 | 1.00 | 0.70 - 1.43 |
|
| |||||
|
| |||||
| CC | 25 (25.0%) | 39 (31.2%) | 1.0 | 1.0 | |
| CT | 51 (51.0%) | 59 (47.2%) | 0.85 | 0.94 | 0.50 - 1.74 |
| TT | 24 (24.0%) | 27 (21.6%) | 0.97 | 0.98 | 0.48 - 2.02 |
| CT + TT | 75 (75.0%) | 86 (68.8%) | 0.88 | 0.95 | 0.53 - 1.71 |
|
| |||||
| C | 101 (50.5%) | 137 (54.8%) | 1.0 | 1.0 | |
| T | 99 (49.5%) | 113 (45.2%) | 0.36 | 1.04 | 0.63 - 1.71 |
Genotype and Allele Frequencies of FAS -670, FAS -1377 and FASL-844 Gene Polymorphisms Among the Controls and the Individuals With HBV Infection and Different Clinical States
| Genotypes and Alleles | Controls (n = 100) | Recovered Individuals (n = 26) | Asymptomatic Carriers (n = 50) | Chronic Hepatitis (n = 50) | Liver Cirrhosis (n = 25) | P-Value |
|---|---|---|---|---|---|---|
|
| ||||||
| AA | 27 (27.0%) | 8 (30.8%) | 17 (34.0%) | 17 (34.0%) | 6 (24.0%) | 0.51 |
| AG | 51 (51.0%) | 11 (42.3%) | 26 (52.0%) | 26 (52.0%) | 17 (68.0%) | |
| GG | 22 (22.0%) | 7 (26.9%) | 7 (14.0%) | 7 (14.0%) | 2 (8.0%) | |
| AG+GG | 73 (73.0%) | 18 (69.2%) | 33 (66.0%) | 33 (66.0%) | 19 (76.0%) | 0.80 |
|
| ||||||
| A | 105 (52.5%) | 27 (51.9%) | 60 (60.0%) | 60 (60.0%) | 29 (58.0%) | |
| G | 95 (47.5%) | 25 (48.1%) | 40 (40.0%) | 40 (40.0%) | 21 (42.0%) | 0.61 |
|
| ||||||
|
| ||||||
| GG | 72 (72.0%) | 18 (69.2%) | 35 (70.0%) | 40 (80.0%) | 15 (60.0%) | 0.65 |
| GA | 25 (25.0%) | 8 (30.8%) | 14 (28.0%) | 9 (18.0%) | 10 (40.0%) | |
| AA | 3 (3.0%) | 0 (0.0%) | 1 (2.0%) | 1 (2.0%) | 0 (0.0%) | |
| GA + AA | 28 (28.0%) | 8 (30.8%) | 15 (30.0%) | 10 (20.0%) | 10 (40.0%) | 0.47 |
|
| ||||||
| G | 169 (84.5%) | 44 (84.6%) | 84 (84.0%) | 89 (89.0%) | 40 (80.0%) | |
| A | 31 (15.5%) | 8 (15.4%) | 16 (16.0%) | 11 (11.0%) | 10 (20.0%) | 0.67 |
|
| ||||||
|
| ||||||
| CC | 25 (25.0%) | 0 (0.0%) [ | 10 (20.0%) | 19 (38.0%) | 10 (40.0%) | 0.02 [ |
| CT | 51 (51.0%) | 16 (61.5%) [ | 28 (56.0%) | 20 (40.0%) | 11 (44.0%) | |
| TT | 24 (24.0%) | 10 (38.5%) [ | 12 (24.0%) | 11 (22.0%) | 4 (16.0%) | |
| CT + TT | 75 (75.0%) | 26 (100.0%) [ | 40 (80.0%) | 31 (62.0%) | 15 (60.0%) | 0.002 [ |
|
| ||||||
| C | 101 (50.5%) | 16 (30.8%) [ | 48 (48.0%) | 58 (58.0%) | 31 (62.0%) | |
| T | 99 (49.5%) | 36 (69.2%) [ | 52 (52.0%) | 42 (42.0%) | 19 (38.0%) | 0.01 [ |
aSignificant differences.
FAS-670 and FAS-1377 Haplotype Analysis in the Patients with Hepatitis B Virus Infection and Controls
| FAS-670 | FAS-1377 | Control (n = 100) | Patients With HBV (n = 125) | P-Value | Odds Ratio | 95% CI |
|---|---|---|---|---|---|---|
|
| A | 64 (32%) | 67 (26.8%) | 1.0 | 1.0 | |
|
| G | 31 (15.5%) | 33 (13.2%) | 0.98 | 1.00 | 0.57 - 1.77 |
|
| A | 105 (52.5%) | 145 (58.0%) | 0.29 | 1.28 | 0.83 - 1.87 |
|
| G | 0 (0.0%) | 5 (2.0%) | 0.08 | - | - |
Combined Genotype Frequencies of FAS-670 and FAS-1377 Polymorphisms in the Patients With HBV Infection and Controls
| Combined Genotype | Controls (n = 100) | Patients With HBV Infection (n = 125) | P-Value | OR | 95% CI | |
|---|---|---|---|---|---|---|
| FAS-670 A/G | FAS-1377 G/A | |||||
|
| GG | 27 (27.0%) | 38 (30.4%) | 1.0 | 1.0 | |
|
| GG | 33 (33.0%) | 48 (38.4%) | 0.95 | 0.97 | 0.51 - 1.85 |
|
| GG | 12 (12.0%) | 4 (3.2%) | 0.03 [ | 0.34 [ | 0.12 - 0.97 [ |
|
| GA | 0 (0.0%) | 2 (1.6%) | 0.55 | - | - |
|
| GA | 18 (18.0%) | 20 (16.0%) | 0.54 | 0.78 | 0.36 - 1.69 |
|
| GA | 7 (7.0%) | 11 (8.8%) | 0.67 | 1.25 | 0.45 - 3.47 |
|
| AA | - | - | - | - | - |
|
| AA | 0 (0.0%) | 1 (0.8%) | 0.65 | - | - |
|
| AA | 3 (3.0%) | 1 (0.8%) | 0.29 | 0.19 | 0.01 - 1.97 |
aSignificant differences.
Joint Effect of FAS and FASL Gene Polymorphisms Among the Patients with HBV Infection and the Controls
| Combined Genotype | Controls (n = 100) | Patients With HBV Infection (n = 125) | P-Value | OR | 95% CI | |
|---|---|---|---|---|---|---|
| FASL-844 | FAS-670 | |||||
|
| GG + GA | 55 (55.0%) | 59 (47.2%) | 1.0 | 1.0 | |
|
| AA | 20 (20.0%) | 27 (21.6%) | 0.50 | 1.25 | 0.65 - 2.39 |
|
| GG + GA | 18 (18.0%) | 26 (20.8%) | 0.93 | 1.03 | 0.51 - 2.06 |
|
| AA | 7 (7.0%) | 13 (10.4%) | 0.57 | 1.32 | 0.49 - 3.54 |
|
| FAS-1377 | |||||
|
| AA + GA | 22 (22.0%) | 20 (16.0%) | 1.0 | 1.0 | |
|
| GG | 53 (53.0%) | 66 (52.8%) | 0.51 | 1.24 | 0.64 - 2.39 |
|
| AA + AG | 6 (6.0%) | 15 (12.0%) | 0.22 | 1.96 | 0.65 - 5.89 |
|
| GG | 19 (19.0%) | 24 (19.2%) | 0.98 | 0.99 | 0.43 - 2.25 |