Literature DB >> 26583985

Reliable Transition State Searches Integrated with the Growing String Method.

Paul Zimmerman1.   

Abstract

The growing string method (GSM) is highly useful for locating reaction paths connecting two molecular intermediates. GSM has often been used in a two-step procedure to locate exact transition states (TS), where GSM creates a quality initial structure for a local TS search. This procedure and others like it, however, do not always converge to the desired transition state because the local search is sensitive to the quality of the initial guess. This article describes an integrated technique for simultaneous reaction path and exact transition state search. This is achieved by implementing an eigenvector following optimization algorithm in internal coordinates with Hessian update techniques. After partial convergence of the string, an exact saddle point search begins under the constraint that the maximized eigenmode of the TS node Hessian has significant overlap with the string tangent near the TS. Subsequent optimization maintains connectivity of the string to the TS as well as locks in the TS direction, all but eliminating the possibility that the local search leads to the wrong TS. To verify the robustness of this approach, reaction paths and TSs are found for a benchmark set of more than 100 elementary reactions.

Entities:  

Year:  2013        PMID: 26583985     DOI: 10.1021/ct400319w

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  22 in total

1.  Mechanistic Investigations of the Iron(III)-Catalyzed Carbonyl-Olefin Metathesis Reaction.

Authors:  Jacob R Ludwig; Susan Phan; Christopher C McAtee; Paul M Zimmerman; James J Devery; Corinna S Schindler
Journal:  J Am Chem Soc       Date:  2017-07-28       Impact factor: 15.419

2.  Nickel-Catalyzed Three-Component Cycloadditions of Enoates, Alkynes, and Aldehydes.

Authors:  Aireal D Jenkins; Michael T Robo; Paul M Zimmerman; John Montgomery
Journal:  J Org Chem       Date:  2020-02-14       Impact factor: 4.354

3.  Regiodivergent Glycosylations of 6-Deoxy-erythronolide B and Oleandomycin-Derived Macrolactones Enabled by Chiral Acid Catalysis.

Authors:  Jia-Hui Tay; Alonso J Argüelles; Matthew D DeMars; Paul M Zimmerman; David H Sherman; Pavel Nagorny
Journal:  J Am Chem Soc       Date:  2017-06-19       Impact factor: 15.419

4.  Lewis Acid Catalyzed Carbonyl-Olefin Metathesis.

Authors:  Jacob R Ludwig; Corinna S Schindler
Journal:  Synlett       Date:  2017       Impact factor: 2.454

5.  Discovery of conical intersection mediated photochemistry with growing string methods.

Authors:  Cody Aldaz; Joshua A Kammeraad; Paul M Zimmerman
Journal:  Phys Chem Chem Phys       Date:  2018-11-07       Impact factor: 3.676

6.  Quantum Chemical Investigation of Dimerization in the Schlenk Equilibrium of Thiophene Grignard Reagents.

Authors:  Ethan R Curtis; Matthew D Hannigan; Andrew K Vitek; Paul M Zimmerman
Journal:  J Phys Chem A       Date:  2020-02-18       Impact factor: 2.781

7.  Iron(III)-catalysed carbonyl-olefin metathesis.

Authors:  Jacob R Ludwig; Paul M Zimmerman; Joseph B Gianino; Corinna S Schindler
Journal:  Nature       Date:  2016-04-27       Impact factor: 49.962

8.  Experimental and Computational Studies on Regiodivergent Chiral Phosphoric Acid Catalyzed Cycloisomerization of Mupirocin Methyl Ester.

Authors:  Sibin Wang; Alonso J Arguelles; Jia-Hui Tay; Miyuki Hotta; Paul M Zimmerman; Pavel Nagorny
Journal:  Chemistry       Date:  2020-03-18       Impact factor: 5.236

9.  Towards a converged strategy for including microsolvation in reaction mechanism calculations.

Authors:  Rebecca Sure; Moad El Mahdali; Alex Plajer; Peter Deglmann
Journal:  J Comput Aided Mol Des       Date:  2021-01-09       Impact factor: 3.686

10.  Brønsted-Acid-Catalyzed Intramolecular Carbonyl-Olefin Reactions: Interrupted Metathesis vs Carbonyl-Ene Reaction.

Authors:  Tanmay Malakar; Paul M Zimmerman
Journal:  J Org Chem       Date:  2021-01-21       Impact factor: 4.354

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.