Literature DB >> 26583720

Directional Noncovalent Interactions: Repulsion and Dispersion.

Ahmed El Kerdawy1, Jane S Murray2,3, Peter Politzer2,3, Patrick Bleiziffer4, Andreas Heßelmann4, Andreas Görling4,5, Timothy Clark1,5,6.   

Abstract

The interaction energies between an argon atom and the dihalogens Br2, BrCl, and BrF have been investigated using frozen core CCSD(T)(fc)/aug-cc-pVQZ calculations as reference values for other levels of theory. The potential-energy hypersurfaces show two types of minima: (1) collinear with the dihalogen bond and (2) in a bridging position. The former represent the most stable minima for these systems, and their binding energies decrease in the order Br > Cl > F. Isotropic atom-atom potentials cannot reproduce this binding pattern. Of the other levels of theory, CCSD(T)(fc)/aug-cc-pVTZ reproduces the reference data very well, as does MP2(fc)/aug-cc-pVDZ, which performs better than MP2 with the larger basis sets (aug-cc-pVQZ and aug-cc-pvTZ). B3LYP-D3 and M06-2X reproduce the binding patterns moderately well despite the former using an isotropic dispersion potential correction. B3LYP-D3(bj) performs even better. The success of the B3LYP-D3 methods is because polar flattening of the halogens allows the argon atom to approach more closely in the direction collinear with the bond, so that the sum of dispersion potential and repulsion is still negative at shorter distances than normally possible and the minimum is deeper at the van der Waals distance. Core polarization functions in the basis set and including the core orbitals in the CCSD(T)(full) calculations lead to a uniform decrease of approximately 20% in the magnitudes of the calculated interaction energies. The EXXRPA+@EXX (exact exchange random phase approximation) orbital-dependent density functional also gives interaction energies that correlate well with the highest level of theory but are approximately 10% low. The newly developed EXXRPA+@dRPA functional represents a systematic improvement on EXXRPA+@EXX.

Entities:  

Year:  2013        PMID: 26583720     DOI: 10.1021/ct400185f

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  9 in total

1.  Dispersion and polar flattening: noble gas-halogen complexes.

Authors:  Anthony C Legon; Dmitry Sharapa; Timothy Clark
Journal:  J Mol Model       Date:  2018-06-22       Impact factor: 1.810

2.  Theoretical study on cooperative effects between X⋯N and X⋯Carbene halogen bonds (X = F,Cl,Br and I).

Authors:  Mehdi D Esrafili; Fariba Mohammdain-Sabet; Parvin Esmailpour
Journal:  J Mol Model       Date:  2013-09-08       Impact factor: 1.810

3.  Polarization, donor-acceptor interactions, and covalent contributions in weak interactions: a clarification.

Authors:  Timothy Clark
Journal:  J Mol Model       Date:  2017-09-27       Impact factor: 1.810

4.  Characterization of halogen···halogen interactions in crystalline dihalomethane compounds (CH2Cl2, CH2Br2 and CH2I2): a theoretical study.

Authors:  Mehdi D Esrafili; Mahshad Vakili; Mohammad Solimannejad
Journal:  J Mol Model       Date:  2014-02-11       Impact factor: 1.810

5.  Substituent effects on cooperativity of pnicogen bonds.

Authors:  Mehdi D Esrafili; Mojhgan Ghanbari; Fariba Mohammadian-Sabet
Journal:  J Mol Model       Date:  2014-09-07       Impact factor: 1.810

6.  Growth Pattern, Stability, and Properties of Complexes of C2H5OH and nCO2 (n = 1-5) Molecules: A Theoretical Study.

Authors:  Cam-Tu Dang Phan; Nguyen Thi Ai Nhung; Nguyen Tien Trung
Journal:  ACS Omega       Date:  2020-06-10

Review 7.  Using the fragment molecular orbital method to investigate agonist-orexin-2 receptor interactions.

Authors:  Alexander Heifetz; Matteo Aldeghi; Ewa I Chudyk; Dmitri G Fedorov; Mike J Bodkin; Philip C Biggin
Journal:  Biochem Soc Trans       Date:  2016-04-15       Impact factor: 5.407

8.  Anisotropic charge distribution and anisotropic van der Waals radius leading to intriguing anisotropic noncovalent interactions.

Authors:  Hahn Kim; Van Dung Doan; Woo Jong Cho; Miriyala Vijay Madhav; Kwang S Kim
Journal:  Sci Rep       Date:  2014-07-25       Impact factor: 4.379

9.  Characterizing Interhelical Interactions of G-Protein Coupled Receptors with the Fragment Molecular Orbital Method.

Authors:  Alexander Heifetz; Inaki Morao; M Madan Babu; Tim James; Michelle W Y Southey; Dmitri G Fedorov; Matteo Aldeghi; Michael J Bodkin; Andrea Townsend-Nicholson
Journal:  J Chem Theory Comput       Date:  2020-03-09       Impact factor: 6.006

  9 in total

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