| Literature DB >> 26583527 |
Paula M Kinnunen, Juha M Holopainen, Heidi Hemmilä, Heli Piiparinen, Tarja Sironen, Tero Kivelä, Jenni Virtanen, Jukka Niemimaa, Simo Nikkari, Asko Järvinen, Olli Vapalahti.
Abstract
Entities:
Keywords: Finland; PCR; conjunctivitis; cowpox; cowpox virus; keratitis; orthopoxvirus; rodent; tecovirimat; viruses; vole; zoonoses
Mesh:
Year: 2015 PMID: 26583527 PMCID: PMC4672437 DOI: 10.3201/eid2112.150621
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
FigurePhylogenetic tree of orthopoxviruses constructed on the basis of the hemagglutinin gene; boldface indicates the CPXV strain infecting the patient described in this article. The phylogeny shows that the sequence derived from this patient represents a locally circulating strain that shares ancestry with a few other CPXV strains and vaccinia virus. A maximum-likelihood tree was built with 1,000 bootstraps in MEGA 6.06 software (http://www.megasoftware.net/). MEGA was used to estimate the best nucleotide substitution model (general time reversible plus invariable sites). The sequence dataset was compiled from the Virus Pathogen Resource database (http://www.viprbrc.org) and aligned by using MUSCLE (http://www.ebi.ac.uk/Tools/msa/muscle/). Scale bar indicates nucleotide submissions per site. CPXV, cowpox virus.