Literature DB >> 26582132

Sequence-Intrinsic Mechanisms that Target AID Mutational Outcomes on Antibody Genes.

Leng-Siew Yeap1, Joyce K Hwang1, Zhou Du1, Robin M Meyers1, Fei-Long Meng1, Agnė Jakubauskaitė1, Mengyuan Liu1, Vinidhra Mani1, Donna Neuberg2, Thomas B Kepler3, Jing H Wang1, Frederick W Alt4.   

Abstract

In activated B lymphocytes, AID initiates antibody variable (V) exon somatic hypermutation (SHM) for affinity maturation in germinal centers (GCs) and IgH switch (S) region DNA breaks (DSBs) for class-switch recombination (CSR). To resolve long-standing questions, we have developed an in vivo assay to study AID targeting of passenger sequences replacing a V exon. First, we find AID targets SHM hotspots within V exon and S region passengers at similar frequencies and that the normal SHM process frequently generates deletions, indicating that SHM and CSR employ the same mechanism. Second, AID mutates targets in diverse non-Ig passengers in GC B cells at levels similar to those of V exons, definitively establishing the V exon location as "privileged" for SHM. Finally, Peyer's patch GC B cells generate a reservoir of V exons that are highly mutated before selection for affinity maturation. We discuss the implications of these findings for harnessing antibody diversification mechanisms.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26582132      PMCID: PMC4751889          DOI: 10.1016/j.cell.2015.10.042

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  47 in total

Review 1.  Germinal centers.

Authors:  Gabriel D Victora; Michel C Nussenzweig
Journal:  Annu Rev Immunol       Date:  2012-01-03       Impact factor: 28.527

2.  The influence of transcriptional orientation on endogenous switch region function.

Authors:  Reiko Shinkura; Ming Tian; Michele Smith; Katrin Chua; Yuko Fujiwara; Frederick W Alt
Journal:  Nat Immunol       Date:  2003-05       Impact factor: 25.606

Review 3.  Controlling somatic hypermutation in immunoglobulin variable and switch regions.

Authors:  Robert W Maul; Patricia J Gearhart
Journal:  Immunol Res       Date:  2010-07       Impact factor: 2.829

4.  Overlapping hotspots in CDRs are critical sites for V region diversification.

Authors:  Lirong Wei; Richard Chahwan; Shanzhi Wang; Xiaohua Wang; Phuong T Pham; Myron F Goodman; Aviv Bergman; Matthew D Scharff; Thomas MacCarthy
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

Review 5.  Discovery of activation-induced cytidine deaminase, the engraver of antibody memory.

Authors:  Masamichi Muramatsu; Hitoshi Nagaoka; Reiko Shinkura; Nasim A Begum; Tasuku Honjo
Journal:  Adv Immunol       Date:  2007       Impact factor: 3.543

6.  B cell receptor signal strength determines B cell fate.

Authors:  Stefano Casola; Kevin L Otipoby; Marat Alimzhanov; Sibille Humme; Nathalie Uyttersprot; Jeffery L Kutok; Michael C Carroll; Klaus Rajewsky
Journal:  Nat Immunol       Date:  2004-02-01       Impact factor: 25.606

7.  Immunoglobulin gene insertions and deletions in the affinity maturation of HIV-1 broadly reactive neutralizing antibodies.

Authors:  Thomas B Kepler; Hua-Xin Liao; S Munir Alam; Rekha Bhaskarabhatla; Ruijun Zhang; Chandri Yandava; Shelley Stewart; Kara Anasti; Garnett Kelsoe; Robert Parks; Krissey E Lloyd; Christina Stolarchuk; Jamie Pritchett; Erika Solomon; Emma Friberg; Lynn Morris; Salim S Abdool Karim; Myron S Cohen; Emmanuel Walter; M Anthony Moody; Xueling Wu; Han R Altae-Tran; Ivelin S Georgiev; Peter D Kwong; Scott D Boyd; Andrew Z Fire; John R Mascola; Barton F Haynes
Journal:  Cell Host Microbe       Date:  2014-09-10       Impact factor: 21.023

Review 8.  Molecular mechanisms of antibody somatic hypermutation.

Authors:  Javier M Di Noia; Michael S Neuberger
Journal:  Annu Rev Biochem       Date:  2007       Impact factor: 23.643

9.  Convergent transcription at intragenic super-enhancers targets AID-initiated genomic instability.

Authors:  Fei-Long Meng; Zhou Du; Alexander Federation; Jiazhi Hu; Qiao Wang; Kyong-Rim Kieffer-Kwon; Robin M Meyers; Corina Amor; Caitlyn R Wasserman; Donna Neuberg; Rafael Casellas; Michel C Nussenzweig; James E Bradner; X Shirley Liu; Frederick W Alt
Journal:  Cell       Date:  2014-12-04       Impact factor: 41.582

10.  Location and length distribution of somatic hypermutation-associated DNA insertions and deletions reveals regions of antibody structural plasticity.

Authors:  B S Briney; J R Willis; J E Crowe
Journal:  Genes Immun       Date:  2012-06-21       Impact factor: 2.676

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  75 in total

Review 1.  What Are the Primary Limitations in B-Cell Affinity Maturation, and How Much Affinity Maturation Can We Drive with Vaccination? Is Affinity Maturation a Self-Defeating Process for Eliciting Broad Protection?

Authors:  Christopher T Stamper; Patrick C Wilson
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-05-01       Impact factor: 10.005

2.  JH6 downstream intronic sequence is dispensable for RNA polymerase II accumulation and somatic hypermutation of the variable gene in Ramos cells.

Authors:  Diana P Castiblanco; Darrell D Norton; Robert W Maul; Patricia J Gearhart
Journal:  Mol Immunol       Date:  2018-04-04       Impact factor: 4.407

3.  BCR selection and affinity maturation in Peyer's patch germinal centres.

Authors:  Huan Chen; Yuxiang Zhang; Adam Yongxin Ye; Zhou Du; Mo Xu; Cheng-Sheng Lee; Joyce K Hwang; Nia Kyritsis; Zhaoqing Ba; Donna Neuberg; Dan R Littman; Frederick W Alt
Journal:  Nature       Date:  2020-05-06       Impact factor: 49.962

4.  Lack of Evidence for a Substantial Rate of Templated Mutagenesis in B Cell Diversification.

Authors:  Julia Fukuyama; Branden J Olson; Frederick A Matsen
Journal:  J Immunol       Date:  2020-07-15       Impact factor: 5.422

Review 5.  RNA Exosome and Non-coding RNA-Coupled Mechanisms in AID-Mediated Genomic Alterations.

Authors:  Brice Laffleur; Uttiya Basu; Junghyun Lim
Journal:  J Mol Biol       Date:  2017-01-07       Impact factor: 5.469

Review 6.  What Targets Somatic Hypermutation to the Immunoglobulin Loci?

Authors:  Justin M H Heltzel; Patricia J Gearhart
Journal:  Viral Immunol       Date:  2019-11-26       Impact factor: 2.257

7.  AID Recognizes Structured DNA for Class Switch Recombination.

Authors:  Qi Qiao; Li Wang; Fei-Long Meng; Joyce K Hwang; Frederick W Alt; Hao Wu
Journal:  Mol Cell       Date:  2017-07-27       Impact factor: 17.970

Review 8.  IgA Responses to Microbiota.

Authors:  Jeffrey J Bunker; Albert Bendelac
Journal:  Immunity       Date:  2018-08-21       Impact factor: 31.745

9.  Immunogenetic factors driving formation of ultralong VH CDR3 in Bos taurus antibodies.

Authors:  Thaddeus C Deiss; Melissa Vadnais; Feng Wang; Patricia L Chen; Ali Torkamani; Waithaka Mwangi; Marie-Paule Lefranc; Michael F Criscitiello; Vaughn V Smider
Journal:  Cell Mol Immunol       Date:  2017-12-04       Impact factor: 11.530

10.  Clustered Mutations at the Murine and Human IgH Locus Exhibit Significant Linkage Consistent with Templated Mutagenesis.

Authors:  Gordon A Dale; Daniel J Wilkins; Caitlin D Bohannon; Dario Dilernia; Eric Hunter; Trevor Bedford; Rustom Antia; Ignacio Sanz; Joshy Jacob
Journal:  J Immunol       Date:  2019-08-02       Impact factor: 5.422

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