Literature DB >> 26578794

Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth.

Evelina Y Basenko1, Takahiko Sasaki1, Lexiang Ji2, Cameron J Prybol1, Rachel M Burckhardt1, Robert J Schmitz3, Zachary A Lewis4.   

Abstract

H3K9 methylation directs heterochromatin formation by recruiting multiple heterochromatin protein 1 (HP1)-containing complexes that deacetylate histones and methylate cytosine bases in DNA. In Neurospora crassa, a single H3K9 methyltransferase complex, called the DIM-5,-7,-9, CUL4, DDB1 Complex (DCDC), is required for normal growth and development. DCDC-deficient mutants are hypersensitive to the genotoxic agent methyl methanesulfonate (MMS), but the molecular basis of genotoxic stress is unclear. We found that both the MMS sensitivity and growth phenotypes of DCDC-deficient strains are suppressed by mutation of embryonic ectoderm development or Su-(var)3-9; E(z); Trithorax (set)-7, encoding components of the H3K27 methyltransferase Polycomb repressive complex-2 (PRC2). Trimethylated histone H3K27 (H3K27me3) undergoes genome-wide redistribution to constitutive heterochromatin in DCDC- or HP1-deficient mutants, and introduction of an H3K27 missense mutation is sufficient to rescue phenotypes of DCDC-deficient strains. Accumulation of H3K27me3 in heterochromatin does not compensate for silencing; rather, strains deficient for both DCDC and PRC2 exhibit synthetic sensitivity to the topoisomerase I inhibitor Camptothecin and accumulate γH2A at heterochromatin. Together, these data suggest that PRC2 modulates the response to genotoxic stress.

Entities:  

Keywords:  H3K27me3; H3K9me3; Polycomb; genotoxic stress; heterochromatin

Mesh:

Substances:

Year:  2015        PMID: 26578794      PMCID: PMC4655558          DOI: 10.1073/pnas.1511377112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  94 in total

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3.  Redundant mechanisms to form silent chromatin at pericentromeric regions rely on BEND3 and DNA methylation.

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4.  Double-strand breaks in heterochromatin move outside of a dynamic HP1a domain to complete recombinational repair.

Authors:  Irene Chiolo; Aki Minoda; Serafin U Colmenares; Aris Polyzos; Sylvain V Costes; Gary H Karpen
Journal:  Cell       Date:  2011-02-25       Impact factor: 41.582

5.  Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation.

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6.  qiRNA is a new type of small interfering RNA induced by DNA damage.

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7.  Single-molecule analysis of combinatorial epigenomic states in normal and tumor cells.

Authors:  Patrick J Murphy; Benjamin R Cipriany; Christopher B Wallin; Chan Yang Ju; Kylan Szeto; James A Hagarman; Jaime J Benitez; Harold G Craighead; Paul D Soloway
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

8.  Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin.

Authors:  Bernhard Lehnertz; Yoshihide Ueda; Alwin A H A Derijck; Ulrich Braunschweig; Laura Perez-Burgos; Stefan Kubicek; Taiping Chen; En Li; Thomas Jenuwein; Antoine H F M Peters
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9.  Replication fork stability is essential for the maintenance of centromere integrity in the absence of heterochromatin.

Authors:  Pao-Chen Li; Ruben C Petreaca; Amanda Jensen; Ji-Ping Yuan; Marc D Green; Susan L Forsburg
Journal:  Cell Rep       Date:  2013-03-07       Impact factor: 9.423

10.  RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.

Authors:  Mikel Zaratiegui; Stephane E Castel; Danielle V Irvine; Anna Kloc; Jie Ren; Fei Li; Elisa de Castro; Laura Marín; An-Yun Chang; Derek Goto; W Zacheus Cande; Francisco Antequera; Benoit Arcangioli; Robert A Martienssen
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

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  33 in total

1.  Polycomb "polypacks" the chromatin.

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Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-19       Impact factor: 11.205

2.  Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila.

Authors:  Zaijun Ma; Hui Wang; Yuping Cai; Han Wang; Kongyan Niu; Xiaofen Wu; Huanhuan Ma; Yun Yang; Wenhua Tong; Feng Liu; Zhandong Liu; Yaoyang Zhang; Rui Liu; Zheng-Jiang Zhu; Nan Liu
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Review 3.  A Matter of Scale and Dimensions: Chromatin of Chromosome Landmarks in the Fungi.

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4.  Normal Patterns of Histone H3K27 Methylation Require the Histone Variant H2A.Z in Neurospora crassa.

Authors:  Abigail J Courtney; Masayuki Kamei; Aileen R Ferraro; Kexin Gai; Qun He; Shinji Honda; Zachary A Lewis
Journal:  Genetics       Date:  2020-07-10       Impact factor: 4.562

5.  Destabilization of B2 RNA by EZH2 Activates the Stress Response.

Authors:  Athanasios Zovoilis; Catherine Cifuentes-Rojas; Hsueh-Ping Chu; Alfredo J Hernandez; Jeannie T Lee
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6.  Normal chromosome conformation depends on subtelomeric facultative heterochromatin in Neurospora crassa.

Authors:  Andrew D Klocko; Tereza Ormsby; Jonathan M Galazka; Neena A Leggett; Miki Uesaka; Shinji Honda; Michael Freitag; Eric U Selker
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7.  Evolutionarily ancient BAH-PHD protein mediates Polycomb silencing.

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Review 8.  H3K27 methylation: a promiscuous repressive chromatin mark.

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9.  Selection and Characterization of Mutants Defective in DNA Methylation in Neurospora crassa.

Authors:  Calvin A Summers; Marissa L Glover; Robert Parrish; William K Storck; Kevin J McNaught; Andrew D Klocko; Nicole D Moss; Kirsten Gotting; Aurelian Stewart; Ariel M Morrison; Laurel Payne; Shin Hatakeyama; Eric U Selker
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10.  Multiple Histone Methyl-Lysine Readers Ensure Robust Development and Germline Immortality in Caenorhabditis elegans.

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