Literature DB >> 26576689

Shift-and-invert parallel spectral transformation eigensolver: Massively parallel performance for density-functional based tight-binding.

Murat Keçeli1, Hong Zhang2, Peter Zapol3, David A Dixon4, Albert F Wagner1.   

Abstract

The Shift-and-invert parallel spectral transformations (SIPs), a computational approach to solve sparse eigenvalue problems, is developed for massively parallel architectures with exceptional parallel scalability and robustness. The capabilities of SIPs are demonstrated by diagonalization of density-functional based tight-binding (DFTB) Hamiltonian and overlap matrices for single-wall metallic carbon nanotubes, diamond nanowires, and bulk diamond crystals. The largest (smallest) example studied is a 128,000 (2000) atom nanotube for which ∼330,000 (∼5600) eigenvalues and eigenfunctions are obtained in ∼190 (∼5) seconds when parallelized over 266,144 (16,384) Blue Gene/Q cores. Weak scaling and strong scaling of SIPs are analyzed and the performance of SIPs is compared with other novel methods. Different matrix ordering methods are investigated to reduce the cost of the factorization step, which dominates the time-to-solution at the strong scaling limit. A parallel implementation of assembling the density matrix from the distributed eigenvectors is demonstrated.
© 2015 Wiley Periodicals, Inc.

Entities:  

Keywords:  generalized eigenvalue problem; semi-empirical methods; sparse matrices; spectrum slicing; tight-binding DFT

Year:  2015        PMID: 26576689     DOI: 10.1002/jcc.24254

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  1 in total

1.  Density-functional tight-binding: basic concepts and applications to molecules and clusters.

Authors:  Fernand Spiegelman; Nathalie Tarrat; Jérôme Cuny; Leo Dontot; Evgeny Posenitskiy; Carles Martí; Aude Simon; Mathias Rapacioli
Journal:  Adv Phys X       Date:  2020-02-18
  1 in total

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