Literature DB >> 26575774

MD and Docking Studies Reveal That the Functional Switch of CYFIP1 is Mediated by a Butterfly-like Motion.

Daniele Di Marino1,2, Giovanni Chillemi3, Silvia De Rubeis1,2, Anna Tramontano4,5,6, Tilmann Achsel1,2, Claudia Bagni1,2,7.   

Abstract

Cytoplasmic FMRP interacting protein 1 (CYFIP1), also known as specifically RAC1 activated protein 1 (Sra1), plays a dual role: together with fragile X mental retardation protein (FMRP) and eIF4E it forms a complex that inhibits mRNA translation, while together with WAVE1, NCKAP1, ABI2, and HSPC300 it forms the WAVE regulatory complex (WRC) that upon RAC1 activation initiates actin polymerization. Here we performed a molecular dynamics (MD) simulation on CYFIP1 extracted from the known WRC structure, which shows that, in the absence of its WRC partners, a butterfly-like motion brings the two ends of CYFIP1 closer together, enabling the interaction with eIF4E. Our MD simulation is supported by available data showing that binding of CYFIP1 to eIF4E and binding to the WRC are mutually exclusive and that there is fluorescence resonance energy transfer between the N- and C-termini of CYFIP1. The differential interaction of RAC1-GTP with the two CYFIP1 structures predicts that RAC1 is directly responsible for the switch between these conformations.

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Year:  2015        PMID: 26575774     DOI: 10.1021/ct500431h

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  13 in total

1.  A nicotinamide phosphoribosyltransferase-GAPDH interaction sustains the stress-induced NMN/NAD+ salvage pathway in the nucleus.

Authors:  Ambra A Grolla; Riccardo Miggiano; Daniele Di Marino; Michele Bianchi; Alessandro Gori; Giuseppe Orsomando; Federica Gaudino; Ubaldina Galli; Erika Del Grosso; Francesca Mazzola; Carlo Angeletti; Martina Guarneri; Simone Torretta; Marta Calabrò; Sara Boumya; Xiaorui Fan; Giorgia Colombo; Cristina Travelli; Francesca Rocchio; Eleonora Aronica; James A Wohlschlegel; Silvia Deaglio; Menico Rizzi; Armando A Genazzani; Silvia Garavaglia
Journal:  J Biol Chem       Date:  2020-01-27       Impact factor: 5.157

2.  A unique binding mode of the eukaryotic translation initiation factor 4E for guiding the design of novel peptide inhibitors.

Authors:  Daniele Di Marino; Ilda D'Annessa; Holly Tancredi; Claudia Bagni; Emilio Gallicchio
Journal:  Protein Sci       Date:  2015-09       Impact factor: 6.725

3.  The development of ADAM10 endocytosis inhibitors for the treatment of Alzheimer's disease.

Authors:  Stefano Musardo; Sebastien Therin; Silvia Pelucchi; Laura D'Andrea; Ramona Stringhi; Ana Ribeiro; Annalisa Manca; Claudia Balducci; Jessica Pagano; Carlo Sala; Chiara Verpelli; Valeria Grieco; Valeria Edefonti; Gianluigi Forloni; Fabrizio Gardoni; Giovanni Meli; Daniele Di Marino; Monica Di Luca; Elena Marcello
Journal:  Mol Ther       Date:  2022-04-04       Impact factor: 12.910

4.  Reducing eIF4E-eIF4G interactions restores the balance between protein synthesis and actin dynamics in fragile X syndrome model mice.

Authors:  Emanuela Santini; Thu N Huynh; Francesco Longo; So Yeon Koo; Edward Mojica; Laura D'Andrea; Claudia Bagni; Eric Klann
Journal:  Sci Signal       Date:  2017-11-07       Impact factor: 8.192

Review 5.  Fragile X-related protein family: a double-edged sword in neurodevelopmental disorders and cancer.

Authors:  Mrinmoyee Majumder; Roger H Johnson; Viswanathan Palanisamy
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-09-02       Impact factor: 8.250

Review 6.  Bioinformatics and Biosimulations as Toolbox for Peptides and Peptidomimetics Design: Where Are We?

Authors:  Ilda D'Annessa; Francesco Saverio Di Leva; Anna La Teana; Ettore Novellino; Vittorio Limongelli; Daniele Di Marino
Journal:  Front Mol Biosci       Date:  2020-05-05

7.  Population Dynamics and Structural Effects at Short and Long Range Support the Hypothesis of the Selective Advantage of the G614 SARS-CoV-2 Spike Variant.

Authors:  Emiliano Trucchi; Paolo Gratton; Fabrizio Mafessoni; Stefano Motta; Francesco Cicconardi; Filippo Mancia; Giorgio Bertorelle; Ilda D'Annessa; Daniele Di Marino
Journal:  Mol Biol Evol       Date:  2021-05-04       Impact factor: 16.240

Review 8.  Control of the eIF4E activity: structural insights and pharmacological implications.

Authors:  Alice Romagnoli; Mattia D'Agostino; Chiara Ardiccioni; Cristina Maracci; Stefano Motta; Anna La Teana; Daniele Di Marino
Journal:  Cell Mol Life Sci       Date:  2021-09-19       Impact factor: 9.261

9.  The autism- and schizophrenia-associated protein CYFIP1 regulates bilateral brain connectivity and behaviour.

Authors:  Nuria Domínguez-Iturza; Adrian C Lo; Disha Shah; Marcelo Armendáriz; Anna Vannelli; Valentina Mercaldo; Massimo Trusel; Ka Wan Li; Denise Gastaldo; Ana Rita Santos; Zsuzsanna Callaerts-Vegh; Rudi D'Hooge; Manuel Mameli; Annemie Van der Linden; August B Smit; Tilmann Achsel; Claudia Bagni
Journal:  Nat Commun       Date:  2019-08-01       Impact factor: 14.919

10.  Genomic Signature of Shifts in Selection in a Subalpine Ant and Its Physiological Adaptations.

Authors:  Francesco Cicconardi; Patrick Krapf; Ilda D'Annessa; Alexander Gamisch; Herbert C Wagner; Andrew D Nguyen; Evan P Economo; Alexander S Mikheyev; Benoit Guénard; Reingard Grabherr; Philipp Andesner; Arthofer Wolfgang; Daniele Di Marino; Florian M Steiner; Birgit C Schlick-Steiner
Journal:  Mol Biol Evol       Date:  2020-08-01       Impact factor: 16.240

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