Rajani Kanteti1, Immanuel Dhanasingh1, Essam El-Hashani2, Jacob J Riehm1, Thomas Stricker3, Stanislav Nagy4, Alexander Zaborin5, Olga Zaborina5, David Biron4, John C Alverdy5, Hae Kyung Im6, Shahid Siddiqui7, Pamela A Padilla8, Ravi Salgia1. 1. a Department of Medicine , Section of Hematology/Oncology, University of Chicago , Chicago , IL , USA. 2. b Benghazi Medical Center , Benghazi , Libya. 3. c Department of Pathology , Microbiology and Immunology, Vanderbilt University School of Medicine , Nashville , TN , USA. 4. d Department of Physics , James Franck Institute, and the College, University of Chicago , Chicago , IL , USA. 5. e Department of Surgery , Pritzker School of Medicine, University of Chicago , Chicago , IL , USA. 6. f Department of Medicine , Section of Genetic Medicine, University of Chicago , Chicago , IL , USA. 7. g Department of Medicine , University of Chicago, Chicago, IL and Department of Basic and Oral Biology, UQUDENT, U. Q. University , Makkah , KSA. 8. h Department of Biological Sciences , University of North- Texas , Denton , TX , USA.
Abstract
We previously investigated MET and its oncogenic mutants relevant to lung cancer in C. elegans. The inactive orthlogues of the receptor tyrosine kinase Eph and MET, namely vab-1 and RB2088 respectively, the temperature sensitive constitutively active form of KRAS, SD551 (let-60; GA89) and the inactive c-CBL equivalent mutants in sli-1 (PS2728, PS1258, and MT13032) when subjected to chronic exposure of nicotine resulted in a significant loss in egg-laying capacity and fertility. While the vab-1 mutant revealed increased circular motion in response to nicotine, the other mutant strains failed to show any effect. Overall locomotion speed increased with increasing nicotine concentration in all tested mutant strains except in the vab-1 mutants. Moreover, chronic nicotine exposure, in general, upregulated kinases and phosphatases. Taken together, these studies provide evidence in support of C. elegans as initial in vivo model to study nicotine and its effects on oncogenic mutations identified in humans.
We previously investigated MET and its oncogenic mutants relevant to lung cancer in C. elegans. The inactive orthlogues of the receptor tyrosine kinaseEph and MET, namely vab-1 and RB2088 respectively, the temperature sensitive constitutively active form of KRAS, SD551 (let-60; GA89) and the inactive c-CBL equivalent mutants in sli-1 (PS2728, PS1258, and MT13032) when subjected to chronic exposure of nicotine resulted in a significant loss in egg-laying capacity and fertility. While the vab-1 mutant revealed increased circular motion in response to nicotine, the other mutant strains failed to show any effect. Overall locomotion speed increased with increasing nicotine concentration in all tested mutant strains except in the vab-1 mutants. Moreover, chronic nicotine exposure, in general, upregulated kinases and phosphatases. Taken together, these studies provide evidence in support of C. elegans as initial in vivo model to study nicotine and its effects on oncogenic mutations identified in humans.
Entities:
Keywords:
C. elegans; MET; MT13032; PS1258; PS2728; RB2088 and nicotine; SD551; vab-1
Lung cancer is a devastating disease that afflicts more than 200,000 people per year
in United States alone and the associated number of deaths is more than any other
type of cancer. Cigarette smoking is the major underlying etiological factor.
Although cigarette smoke contains more than 60 carcinogens, nicotine, a major
component of cigarette smoke, is a cocarcinogen, and the principal addictive
agent. The
nicotine-derived nitrosamines are nevertheless carcinogenic. Moreover, nicotine is
known to promote cancer cell proliferation, angiogenesis and epithelial-mesenchymal
transition thereby aiding tumor growth and metastasis. The conduits for nicotine
mediated signaling are the ubiquitously expressed acetylcholine receptors (nACHR)
whose downstream signaling targets are also common to pathways mediated by receptor
tyrosine kinases (RTK).The simple soil nematode, C. elegans, is gaining acceptance as an
in vivo model to investigate the toxic effects of metals and
pesticides. In addition,
highly addictive substances such as nicotine, alcohol, cocaine and opioids have also
been investigated in this animal model. The end points in the investigations are usually
changes in the worm behavior (locomotion, chemotaxis, feeding), shape
(morphological), development (fork head, multiple vulva) and genome (DNA damage).
Its fully sequenced genome combined with short life cycle, small size and a highly
invariant cell lineage make it an excellent model to investigate the role of a
variety of key signaling pathways. It also has the added advantage of having minimal
molecular redundancy in a variety of signaling pathways.RTKs contribute significantly to the oncogene addiction seen in cancers. In this
regard, we and others have shown that the RTKs such as EGFR, MET, RON and Eph are
not only overexpressed but frequently undergo gain-of-function mutations in a
variety of cancers. Our
continued effort to identify potential lung cancer therapeutic targets led us to the
discovery of increased occurrence of gain-of-function mutations in RTKs such as MET,
EphB4, key intracellular signaling molecules such as RAS GTPase, the adapter focal
adhesion molecule Paxillin and the PAX transcription factors 5 and 8. Their
downstream target such as RAS is also known to undergo oncogenic mutation. On the
other hand, mutations in c-CBL, the E3 ubiquitin ligase that negatively regulates
RTKs, characterized in lung cancer, turned out to promote cell growth and
proliferation and enhance cell motility. The c-CBL wild type (wt), however,
suppressed the above effects. Moreover, we have previously demonstrated that C.
elegans can be used as an in vivo model for the rapid
screening MET gain-of-function mutants discovered in humanlung cancer. Transgenic
worms that expressed either MET R988C or MET T1010I suffered from significantly low
fecundity and abnormal vulval development characterized by hyperplasia compared to
those worms that expressed wt MET. Interestingly, the above effects were exacerbated
by nicotine treatment.Our search of the C. elegans data base revealed the existence of
strains that harbored non-functional mutants of MET (RB2088), Eph
(vab-1(e2)II), RAS (SD551 derived from let-60)
and c-CBL (PS2728, PS1258, MT13032 derived from sli-1). Since the
RTKs MET and Eph, and the RAS GTPase are known to be over expressed in several
cancers and support cell proliferation and growth, we hypothesized that
non-functional mutants of these molecules will adversely affect the survival and
related functions in the worms. In comparison, the wt c-CBL negatively regulates
RTKs, and worms harboring nonfunctional sli-1 are therefore
expected to have abnormal growth and motility. Based on our previous work, we also
postulated that chronic exposure to nicotine would further aggravate the various
functional behaviors in the above mutant strains.The current studies are aimed at understanding the effect of chronic exposure to
nicotine on the phenotype, survival, fertility, egg-laying capacity, locomotion and
gene expression profiling on select C. elegans mutants relevant to
cancer. The mutant worms used were vab-1 (inactive, Eph), RB2088
(inactive, MET), SD551 (temperature sensitive strain expressing constitutively
active form of KRAS), and 3 sli-1 mutants PS2728, PS1258, and
MT13032 (inactive, c-CBL). Here we report the changes in the intrinsic behavioral
and functional aspects of the above mutants compared to wt N2 control animals. Also,
we carried out gene expression profiling studies. Finally, we also present here the
effects of chronic nicotine treatment on the above mutants that support our
contention that C. elegans is a suitable in vivo
model to screen functionality of cancer mutations.
Methods
Nematode strains and culturing
The Bristol N2 strain was used as a wt standard in all the experiments.
Non-functional mutant strains used in this study were
vab-1(eII)II (G912E; Eph ortholog), RB2088 (MET equivalent),
and sli-1 (c-CBL ortholog) mutants: PS2728, PS1258 and MT13032. In contrast,
SD551 harbors a temperature-sensitive mutant of a KRAS ortholog. It is inactive
at 15°C but active at 20°C, the temperature at which the worms were
cultured.
is a summary of the various mutants used in this study. The worms were cultured
on standard nematode growth medium (NGM) agar plates carrying a lawn of
E. coliOP50 as a food source at 20°C as previously
described. All the
strains were obtained from the Caenorhabditis Genetic Center at
the University of Minnesota.
Table 1.
Various strains of C. elegans used in the study
explaining their genotypes and phenotypes.
Strain
ID
C.elegans
Ortholog
H.Sapiens
Ortholog
Genotype
Variation
Source
Phenotype
Notes
N2
—
—
—
—
CGC
—
WT Bristol
Variant
SD551
let-60
Ras
family
let-60(ga89) IV
unknown
CGC
varied,primarily
Muv
Exons 6–11
missing (most of kinase domain)
CB2
vab-1
Eph
family
vab-1(e2) II
2735G>A
CGC
notched
head
<70%
penetrance
RB2088
F11E6.8
Met
family
F11E6.8(ok2754) IV
900-bp
deletion
CGC
unknown
MT13032
sli-1
Cbl
family
sli-1(n3538) X
914C>T
(S305L)
CGC
SynMuv
—
PS2728
sli-1
Cbl
family
sli-1(sy143) X
454C>T
(Q152*)
CGC
SynMuv
Various strains of C. elegans used in the study
explaining their genotypes and phenotypes.
Reagents
Nicotine (cat. #N0267), 5-Fluoro-2′-deoxyuridine, (FUDR) (cat. #
F0503), Ampicillin (cat.# A1593) were obtained from Sigma. Trizol was
obtained from Life Technologies (cat. #13596–06).
Kaplan-meyer survival assays on NGM agar
NGM agar plates were prepared with Amp/FUDR to which nicotine was added at
various concentrations (control, 50 μM and 500 μM) according to
the protocol (http://www.jove.com/index/details.stp?ID=1152). For each
group, 2 plates were used and on each plate 20 – 25 age synchronized L4
worms were transferred and the worms were grown at 20°C. Every two days the
worms were transferred to a new NGM agar plate. The worms were counted every
12 h for 2 weeks. Survival curves were plotted using the survival package
for the R Statistical Software.
Egg-laying assay
Worms were grown from synchronized egg populations on nicotine and control plates
to early L4 stage and 4 worms were then transferred to a single well in a
24-well tissue culture plate with identical NGM agar composition. Newly laid
eggs were counted after 6.0 h from all the wells. The rate of egg-laying
was calculated as eggs/worm. For each strain the assay was repeated 3 to
4 times.
Fertility assay
Eggs were isolated from gravid adult hermaphrodite worms by alkaline hypochlorite
treatment and then grown on the NGM agar plates with and without nicotine till
early L4 stage. Single L4-stage worms grown at 20°C were transferred to
fresh plates every day until they stopped laying eggs. All progeny plates were
incubated at 20°C for 2 days, and the number of progeny developed was
counted for every plate.
The assay was repeated for each strain at least 3 to 4 times.
Liquid culturing of C. elegans for phenotypic study
The worms were grown in 24-well tissue culture plate according to the method of
Fitzgerald. In brief
the liquid culture was prepared with sterilized S basal buffer (5.85g NaCl, 1g
K2HPO4, 6 g KH2PO4 and water to 1 L) supplemented with OP50 E.
Coli bacteria, cholesterol, FUDR (25μM) to suppress reproduction
along with nicotine. Synchronized L4 worms were added at a density of 12
± 6 worms per well. Liquid culture was changed daily by carefully
aspirating the liquid. The plates containing worms were kept on orbital shaker
at room temperature. The experiment was carried out for 10 d. The worms were
monitored daily and photographed for any phenotypic changes using inverted
microscope (Olympus IX71, Center valley, PA, USA).
Locomotion analysis
Locomotion behavior was analyzed using an automated worm tracking system as
previously described. In brief, eggs were isolated from adult worms
by alkaline hypochlorite treatment and grown on NGM agar plates with and without
nicotine to obtain synchronized L4 population. For analysis, 20 L4 worms were
transferred to 35 mm NGM agar bacteria free plate with an identical agar
composition to the original culture plate. The experimental worms were then
transferred to fresh plates one hour before the analysis so as to get them
acclimatized. For each condition, we used 5 such plates. The temperature was
maintained at 20–21°C with relative humidity of 30–40%.
Behavior was recorded for 10 minutes at 2 frames per second using a CCD camera
(Prosilica GC2450, Allied Vision Technologies, Stadtroda, Germany). Movies were
analyzed using a modified version of existing MATLAB (MathWorks, Natick, MA)
scripts. After
background subtraction, individual animals were detected based on a pixel
intensity threshold and particle size and their centroid coordinates determined
for each frame. Speed for each worm was computed as mean centroid displacement
(mm) per second excluding regions where the animal made sharp-angle turns.
Gene expression analysis
Eggs were isolated using hypochlorite treatment and grown on control and nicotine
containing plates till early L4 stage. A total 5, 10 cm NGM agar plates,
with and without nicotine, were used for each group. Once the worms became
adults, total RNA was extracted from all the strains using Trizol. RNA
extraction was done from 3 independent experiments Global gene expression
analysis was determined by microarray analysis of the extracted RNA as described
below.Gene expression microarray experiments were conducted with biological replication
in all samples. Sample processing order was randomized. RNA quality was assessed
by Bioanalyzer (minimum RIN = 7.5). cRNA was produced using the Agilent
Low-Input Linear amplification and labeling kit. Array hybridizations (Agilent
C. elegans (V2) Gene Expression Microarray, 4x44K) were
performed at the University of Chicago and Argonne National Labs high throughput
genome analysis core facility, according the manufacturer’s instructions.
The Agilent FE software was used to extract feature intensities and to flag
saturated, non-uniform and outlier features. Probe intensity was adjusted by
subtracting background intensity using the minimum method and quantile
normalized between arrays. Outlier arrays were eliminated based on total number
of flagged probes, intra-array variance, inter-array variance, biological
replicate variance and spike-in linearity. Multiprobe probe sets were
hierarchically clustered. Using one minus the Pearson correlation coefficients
as a distance matrix, clusters were divided into groups by cutting clusters at a
dendrogram height of 0.5 (roughly producing clusters with internal correlation
coefficients 0.5). All downstream analyses were performed independently on each
resulting cluster and all single probe probesets. For each probe set, surrogate
variable analysis (SVA) was performed on the matrix of expression measurements,
after controlling for the effects of genotype and nicotine exposure. For each probe set, we
then constructed a linear fixed effects model y ˜ m + (genotype *
nicotine) + probe + e, where y is the log2 transformed probe
intensity, m is the expected probe intensity, genotype is a factor representing
the effect of genotype, nicotine is a factor representing the effect of nicotine
and probe the effect of the oligonucleotide probe and e is the residual error.
The * represents the genotype and nicotine effects are fully crossed, to
identify interactions between genotype and nicotine. The significance of
covariate effects was assessed by estimating false discovery rates, using
Storey’s q-value method. Differentially expressed genes, defined by FDR cutoff
(see above) were entered into DAVID (the database for annotation, visualization
and integrated discovery) bioinformatics resources. All genes on the array were
used as a background.
Statistical analysis
Cox proportional hazards model was used to assess the effect of nicotine and
strains on survival. For egg laying and fertility assays, we estimated the
effect of nicotine and variant using mixed effects linear model with treatment
and variant type and their interaction terms as covariates. A random effect for
batch was used to account for the fact that some batches tend to be more
productive than others.Locomotion data was analyzed using speed as outcome and treatment as a
categorical covariate. Regular, log-transformed and robust regression approaches
were used to assess sensitivity of results to outliers and distributional
assumptions. Analysis of locomotion was done according to a 2 sample z test
which is a standard hypothesis test comparing 2 means. The absolute value of the
z score had to be greater than 1.96 to corresponds to the p = 0.05
significance level that was used. Otherwise, both means were considered to be
the same.
Results
Chronic nicotine treatment decreases C. elegans
survival
Survival assays were carried out over a period of 2 weeks on worms grown in NGM
agar plates that were exposed to nicotine (50 μM and 500 μM). As
shown in ,
chronic exposure to nicotine, especially at higher concentration, had
significant impact on survival of all strains of worms except for the 2
sli-1 mutants (MT13032 and PS1258). The
vab-1 (e2)II and SD551 strains suffered the maximum loss in
survival compared to the wt worms and other mutant strains. Treatment with
nicotine reduced the lifespan of worms for all strains (p = .0034).
Survival also depends on strain, with N2 being the longest living group (p
= .0004). We did not find significant difference in nicotine treatment
effect on survival across different strains. Since nicotine is known to induce
behavioral changes in worms, we next determined the effects of nicotine treatment
on egg-laying capacity, fertility and locomotion.
Figure 1.
Effect of Nicotine on survival ofSurvival plots of C.
elegans when exposed to different concentrations of
nicotine are shown. The experiment was repeated twice and the
results were comparable. The data was subjected to Kaplan Meier
survival analysis using Graphpad Prism Software 4.02V.
Effect of Nicotine on survival ofSurvival plots of C.
elegans when exposed to different concentrations of
nicotine are shown. The experiment was repeated twice and the
results were comparable. The data was subjected to Kaplan Meier
survival analysis using Graphpad Prism Software 4.02V.
Nicotine suppresses egg-laying capacity and fertility of C.
elegans
The average number of eggs laid by L4 worms during a 6 hour period after 10
d of nicotine treatment is presented in . Except for RB2088 and SD551, the
egg-laying capacity of all other strains was somewhat lower as compared to N2
worms. Nicotine treatment had a suppressive effect on the egg-laying capacity of
all strains, including that of control worms, reducing egg production by
9% at 50 μM nicotine and 27% at 500 μM nicotine.
As shown in ,
the rate of nicotine-induced decrease in egg-laying capacity was affected
significantly more in the sli-1 mutant strain PS2728 (p
= .0091) and suggestively more affected in the MET mutant equivalent
strain RB2088 (p = .0643).
Figure 2.
Effect of Nicotine on egg-laying capacity and fertility
ofa.
Egg-laying responses to chronic exposure of nicotine were assayed on
NGM agar. Each condition had 24 worms and the assay was repeated
4 times. Rate at which eggs were laid was calculated as
eggs/worm and percent relative egg-laying compared to untreated N2
worms is shown. b. To quantify the number of progeny
produced by hermaphrodites, synchronized L4 worms were collected and
at least 4 worms were allowed to lay eggs on individual plates.
Animals were examined until no progeny were produced within a 24-h
period and percent relative fertility compared to untreated N2 worms
is shown.
Effect of Nicotine on egg-laying capacity and fertility
ofa.
Egg-laying responses to chronic exposure of nicotine were assayed on
NGM agar. Each condition had 24 worms and the assay was repeated
4 times. Rate at which eggs were laid was calculated as
eggs/worm and percent relative egg-laying compared to untreated N2
worms is shown. b. To quantify the number of progeny
produced by hermaphrodites, synchronized L4 worms were collected and
at least 4 worms were allowed to lay eggs on individual plates.
Animals were examined until no progeny were produced within a 24-h
period and percent relative fertility compared to untreated N2 worms
is shown.We next determined the total number of progeny generated in a worm’s life
span for each of the strains. shows percent relative fertility
compared to the N2 control. Overall, the fertility of most of the untreated
mutant strains was lower compared to N2 worms by about 20% except for
SD551. With increasing concentrations of nicotine, the percentage fertility of
each strain decreased. At the highest concentration of nicotine, differences
between the untreated strains was completely abrogated. N2 and SD551 were the
most affected strains, showing maximum reduction in fertility upon nicotine
exposure.
Nicotine induces morphological changes in C. elegans
We next wanted to know whether the chronic exposure of nicotine has any effect on
the morphology of these mutants. The RAS mutant SD551 revealed multivulva
phenotype that was exacerbated upon chronic exposure to nicotine ().
Meanwhile, the sli-1 mutant strains, PS2728 and MT13032, had a
dramatic decrease in body size as compared to untreated control worms ().
Percentage of SD551, PS2728 and MT13032 worms with phenotypic changes in the
presence and absence of nicotine are summarized in . Treatment with nicotine
significantly increased morphological changes in each of the mutant strains
compared to control (p<.05). However, exposure to nicotine did not induce any
morphological changes in N2 (data not shown).
Figure 3.
Phenotypic changes inafter chronic treatment with
nicotine. Phenotypes of SD551 mutant. 10X and 20X
magnification images of SD551 a. control showing normal
vulva phenotype and b. with nicotine showing multiple
vulva phenotype. Phenotypes of PS2728 and MT13032 (Sli-1)
mutants. 10X and 20X magnification images of PS2728
c. control showing normal body size and
d. with nicotine showing shrinkage in the body size
(MT13032 not shown).
Table 2.
% of C. elegans phenotypes observed with
chronic nicotine treatment.
Strain
Control
500 μM
Nicotine
1000 μM
Nicotine
PS2728
2.22
± 2.22
10.74
± 3.53
11.85
± 2.67
MT13032
0.00
± 0.00
7.04
± 1.61
9.26
± 3.76
SD551
1.11
± 1.11
11.11
± 5.13
12.59
± 4.51
Synchronized L4 worms of all the strains were exposed to nicotine
in liquid culture for 10 d and their phenotypes were observed.
Values are given as Average ± SEM. There is a significant
difference between the % phenotypes of control,
500 μM and 1000 μM nicotine within each strain
(p < 0 .05)
Phenotypic changes inafter chronic treatment with
nicotine. Phenotypes of SD551 mutant. 10X and 20X
magnification images of SD551 a. control showing normal
vulva phenotype and b. with nicotine showing multiple
vulva phenotype. Phenotypes of PS2728 and MT13032 (Sli-1)
mutants. 10X and 20X magnification images of PS2728
c. control showing normal body size and
d. with nicotine showing shrinkage in the body size
(MT13032 not shown).% of C. elegans phenotypes observed with
chronic nicotine treatment.Synchronized L4 worms of all the strains were exposed to nicotine
in liquid culture for 10 d and their phenotypes were observed.
Values are given as Average ± SEM. There is a significant
difference between the % phenotypes of control,
500 μM and 1000 μM nicotine within each strain
(p < 0 .05)
Chronic exposure to nicotine enhanced locomotion in C.
elegans
In the absence of nicotine, there is a significant decrease in speed of all
mutant worms compared to the wt N2 worms (). Our data shows that N2 worms had
maximum average speed while SD551 had minimum average speed in comparison to
other mutants. Notably, chronic exposure to nicotine significantly enhanced the
locomotion speeds in wt and all mutants except vab-1 (). The relative
distribution of speeds is shown for all the worms and the average speeds before
and after nicotine treatment in the various groups of worms tested are
summarized in . We also found that vab-1
mutant showed increased circular motion compared to the wt N2 (, supplementary
videos 1, 2, 3, 4).
Figure 4.
(A). Effect of chronic exposure of nicotine on the locomotion
velocity of differentstrains. Synchronized worms
were grown on plates with and without nicotine. 20-30 L4 worms were
transferred to bacteria free plates with nicotine and incubated for
20 min before recording tracks. Worms were tracked for 600
seconds. The corresponding normalized histograms of N2, SD551,
vab-1, RB2088, MT13032, PS1258 and PS2728
speeds with (a, c, e, g, i, k, m) and without nicotine (b, d, f, h,
j, l, n) are respectively shown. Average velocity (mm/s) of each
mutant is shown in . (B). Effect of
chronic exposure of nicotine on worm path. Worms
(N2 wt, and vab-1) were tracked for 10
minutes. The tracks of 20 worms with and without nicotine are
shown.
Table 3.
Effect of chronic exposure of nicotine on locomotion speed (mm/s) of
different mutants.
Strain
Control
Nicotine
500 μM
N2
0.13134
+ 0.00018
0.13955
+ 0.00016
SD551
0.07222
± 0.00028
0.09903
± 0.00035
vab-1
0.10525
+ 0.00016
0.09523
+ 0.00012
Rb2088
0.09740
± 0.00036
0.10451
± 0.00036
MT13032
0.07693
± 0.00015
0.12419
± 0.00014
PS1258
0.10011
± 0.00029
0.11642
± 0.00029
PS2728
0.10188
± 0.00028
0.12069
± 0.00023
With exposure to nicotine, locomotion speed of all the strains
has increased except for vab-1. N2 has maximum
speed while SD551 has the least. Values are given as Average
± SEM.
(A). Effect of chronic exposure of nicotine on the locomotion
velocity of differentstrains. Synchronized worms
were grown on plates with and without nicotine. 20-30 L4 worms were
transferred to bacteria free plates with nicotine and incubated for
20 min before recording tracks. Worms were tracked for 600
seconds. The corresponding normalized histograms of N2, SD551,
vab-1, RB2088, MT13032, PS1258 and PS2728
speeds with (a, c, e, g, i, k, m) and without nicotine (b, d, f, h,
j, l, n) are respectively shown. Average velocity (mm/s) of each
mutant is shown in . (B). Effect of
chronic exposure of nicotine on worm path. Worms
(N2 wt, and vab-1) were tracked for 10
minutes. The tracks of 20 worms with and without nicotine are
shown.Effect of chronic exposure of nicotine on locomotion speed (mm/s) of
different mutants.With exposure to nicotine, locomotion speed of all the strains
has increased except for vab-1. N2 has maximum
speed while SD551 has the least. Values are given as Average
± SEM.
Chronic exposure to nicotine and gene expression analysis in C.
elegans
The gene expression experiments focused on the Eph receptor mutation
(vab-1) and the RAS mutation (SD551) with nicotine
concentrations of 0 and 500 μM. The linear models used in these
experiments provide differentially expressed genes for each genotype, for
nicotine alone, and for the interaction between nicotine and each genotype.
Mutation of vab-1 dramatically altered gene expression
patterns, with 4496 genes differentially expressed (FDR < 0.01). SD551
mutations also significantly altered gene expression, with 1276 genes
significantly differentially expressed (FDR < 0.01). Nicotine had a smaller
effect, affecting the expression of 986 genes (FDR < 0.05). This can also be
seen in the principal components analysis; the first 2 principal components
() largely
separate the samples based on genotype (although the second PCA does also show
separation based on nicotine exposure). Interestingly, however, the normal
genotype exposed to 500 μM nicotine clusters with the RAS mutant worms
(),
suggesting that, at least with regards to global gene expression, exposure of
normal worms to nicotine phenocopies mutation of RAS (c). PCAs 2–4 () separate
samples based on nicotine exposure.
Figure 5.
Effect of Nicotine on Gene Expression analysis of
N2,and SD551
mutants of.
Panels a-c: Principle Components Analysis plots of the
first 3 PCAs. The letter designates the genotype of the strain (v
= vab-1, s = SD551, n = N2)
and the color designates nicotine exposure (blue = 500 x
nicotine, red – 0 x nicotine). Panels d-f: -log10
p-value (fisher’s exact test) for enrichment of pathways and
process in differentially expressed genes. Panel d shows nicotine
alone, Panel e show the interaction between nicotine and
vab-1, and Panel f shows the interaction
between nicotine and SD551.
Effect of Nicotine on Gene Expression analysis of
N2,and SD551
mutants of.
Panels a-c: Principle Components Analysis plots of the
first 3 PCAs. The letter designates the genotype of the strain (v
= vab-1, s = SD551, n = N2)
and the color designates nicotine exposure (blue = 500 x
nicotine, red – 0 x nicotine). Panels d-f: -log10
p-value (fisher’s exact test) for enrichment of pathways and
process in differentially expressed genes. Panel d shows nicotine
alone, Panel e show the interaction between nicotine and
vab-1, and Panel f shows the interaction
between nicotine and SD551.To understand the biological process affected by mutation of Eph, RAS and
exposure to nicotine, we performed pathway analysis on differentially expressed
genes. Mutation of Eph significantly altered several important processes,
including cell cycle, embryonic development and larval development
(Supplementary Fig. 1). Mutation of RAS altered a huge number of
F-box containing proteins (Supplementary Fig. 2). C.
elegans had an expansion of F-box proteins during evolution and the
function of many of these proteins is poorly understood. RAS also significantly
affected the expression of several serine-theronine kinases, as well as
structural genes and genes involved in locomotion and response to stimulus.
Nicotine exposure by itself significantly affected important pathways, such as
post-embryonic and larval development and signal transduction (). The
interaction of Eph and nicotine led to altered expression of numerous F-box
proteins as well. However, it also led to differential expression of several
interesting classes of genes, including positive regulation of growth rate
(). A heat
map of the linear model effect size of the 280 genes (Supplementary Table
1) in positive regulation of growth rate shows that mutation of Eph
and, to a lesser extent, exposure to nicotine, drives gene expression in the
same direction. Interestingly, however, the interaction between Eph and nicotine
strongly drives gene expression in the opposite direction. As specific examples,
expression of Paxillin and EGL-15 (i.e. FGFR homolog) are strongly increased by
mutation of Eph, and their expression is downregulated in EphA mutants exposed
to nicotine. Alternatively, PAR-6, a gene involved in
epithelial cell polarity, is downregulated by Eph and upregulated by the
combination of Eph and nicotine. This is in contrast to several serine-threonine
kinases that are significantly differentially expressed in both Eph and RAS
mutants (). Most kinases are strongly
upregulated by mutations and by nicotine, and even more strongly upregulated by
the interaction between genotype and nicotine.
Figure 6.
Effect of Nicotine on heatmap analysis of
N2,and SD551
mutants ofPanel a: Heatmap of β
effect sizes from linear models for differentially expressed genes
in the “positive regulation of growth rate." Panels
b-d: Beta effect sizes for 3 example genes in
“positive regulation of growth rate." (Red = N2, Blue
= vab-1, Green =
vab-1+500 Nicotine, Purple = SD551,
Orange = SD551+Nicotine, Yellow = 500 Nicotine).
Panels e-f: Heatmap of gene expression levels for
differentially expressed serine-threonine kinases.
Effect of Nicotine on heatmap analysis of
N2,and SD551
mutants ofPanel a: Heatmap of β
effect sizes from linear models for differentially expressed genes
in the “positive regulation of growth rate." Panels
b-d: Beta effect sizes for 3 example genes in
“positive regulation of growth rate." (Red = N2, Blue
= vab-1, Green =
vab-1+500 Nicotine, Purple = SD551,
Orange = SD551+Nicotine, Yellow = 500 Nicotine).
Panels e-f: Heatmap of gene expression levels for
differentially expressed serine-threonine kinases.Given the phenotypes above, we next asked whether expression of genes known to
have similar phenotypes when mutated was altered by mutation of RAS or Eph, or
addition of nicotine. For example mutation of Eph altered expressed of 54
UNCoordinated genes, and the interaction between Eph and nicotine altered
expression of 18 UNCoordinated genes. Expression of Egg-Laying (egl) defective
genes were also altered by mutation of Eph (18 genes) and RAS (11 genes).
Interestingly, although mutations of RAS generated a multi-vulva phenotype that
was exacerbated by exposure to nicotine, only 1 of the 38 genes known to have a
SynMuv phenotype demonstrated significantly altered expression by Ras mutation
or exposure to nicotine
Discussion
Lung cancer is the second most common cancer and the leading cause of death among all
cancers. The overall prognosis for lung cancer has remained poor with a survival
rate of mere 16% for the first 5 y With the advent of targeted molecular
therapies this is expected to improve. In lieu of rapid development of resistance,
it is imperative that we constantly add to the arsenal by developing novel targeted
therapeutics. In this context, we have previously demonstrated the use of C.
elegans as a simple model to study oncogenic mutants discovered in
humanlung cancer.C.
elegans engineered to over-express the MET mutant revealed an abnormal
vulval phenotype with hyperplasia. Interestingly, exposure to nicotine significantly
aggravated the above phenotype suggesting that C. elegans can be
used as an in vivo model for rapid screening of c-MET mutants as
well as drugs. Here we carried out systematic studies to evaluate the effects of
chronic exposure to nicotine on wt and mutant worms such as vab-1
(Eph), SD551 (KRAS), RB2088 (MET) and 3 sli-1 (c-CBL) mutants,
namely PS2728, PS1258 and MT13032. In general, the mutants suffered loss in
survival, egg-laying capacity and fertility that was aggravated by exposure to
nicotine. Locomotion studies revealed that with the increase in concentration of
nicotine, there was a significant increase in locomotion speed in all strains except
for vab-1. Wt N2 showed the maximum speed while SD551 had the
least. We also found vab-1 mutant worms had increased circular path
motion in that was enhanced with nicotine; an effect not observed in other mutant
strains. Heat map analysis of gene expression profiling data clearly revealed up
regulation of various kinases and phosphatases in C. elegans that
are marginally expressed in N2 worms in response to chronic nicotine exposure. The
expression of these genes was already elevated in SD551 that was further increased
in response to nicotine. Our findings further strengthen the role of nicotine as a
promoter of cancer.C. elegans has served as an excellent model to investigate essential
signaling pathways and behavioral responses due to its simple, non-redundant genetic
makeup and ease of culture. Its behavioral responses to nicotine such as acute
response, tolerance, withdrawal and sensitization mirror those that seen in mammals
and require specific nAChRs that are highly conserved. For instance, lack of TRPC
(transient receptor potential canonical) channels in C. elegans
results in defective behavioral response to nicotine that can be rescued using human
TRPC gene. Previously, we
showed that C. elegans can serve as a model for mechanistic studies
related to lung cancer. Worms forced to express a constitutively active MET mutant
frequently associated with lung cancer suffered from significantly increased
incidence of multi-vulval phenotype and associated hyperplasia that was exacerbated
upon chronic exposure to nicotine. Here, we have extended the studies to investigate the
behavioral and genetic changes in response to chronic nicotine treatment using
select mutants of C. elegans that are relevant to humancancers.The strong association between smoking and lung cancer is well known and has been the
subject of intense investigation for more than 3 decades. The major addictive
principle of cigarettes is the nicotine in the tobacco. Although, nicotine is not a
carcinogen, it does play a significant role in promoting tumor growth and
metastasis, and therefore can be termed a ‘cocarcinogen’. It promotes
tumor growth through enhanced proliferation, cell motility and invasion,
epithelial-mesenchymal transition, angiogenesis and by triggering signaling pathways
that are associated with autocrine loops linked to tumor growth. Significant
association between smoking and the development of pancreatic and lung cancers has
been reported and moreover, the prognosis is poor in smokers suffering from above
cancers.
Cigarette smoke and the increased risk of pulmonary metastasis of breast cancer has
been known for some time and was confirmed in a murine model. The link between nicotine and
metastasis can be appreciated by the fact that it promotes epithelial mesenchymal
transition, a process that is fundamental to cancer invasion. Interestingly, a dose dependent increase in
the proliferation and invasion of breast, lung and pancreatic cancer cells using
matrigel in response to nicotine was noted. It was also established by the same group that the
effect was mediated through nAChRs.Current experiments utilized relatively higher concentrations of nicotine that ranged
from 50 to 500 μM. Since, little is known about the uptake mechanism of
nicotine by the nematode C. elegans, it is rather difficult to
determine the actual effective concentration of nicotine achieved in the worm. The
range of concentrations used in the present study are comparable to those used by
previously.We have utilized in this study several C. elegans mutants that have
either non-functional or constitutive forms of key signaling molecules known to play
a role in tumorigenesis. Others and we have previously shown that MET mutations, RAS
mutations, CBL mutations can occur in the context of smoking. We have recently shown
a critical role for EphB4 receptor tyrosine kinase in esophageal cancer and lung
cancer.C.
elegans has one equivalent receptor vab-1. We used
here the kinase inactive C. elegans mutant vab-1
(G912E) to investigate the chronic effects of nicotine. RAS is an important oncogene that is mutated
in a number of tumors, such as pancreatic, colon and lung cancer. There are a number
of KRAS mutations in lung cancers, especially on codon 12, 13 and 61. KRAS appears
to be an oncogenic driver in lung cancer. Oncogenic mutations in the RAS gene are
present in approximately 30% of all humancancers. KRAS mutations occur in
more than 90% of pancreatic and colon cancers and about 20–30%
in non-small-cell lung cancer. It is important to note that non-small lung cancerpatients with KRAS mutations are also unresponsive to EGFR or ALK targeted
therapies. In general, the prognosis is poor with KRAS mutations., We therefore
investigated its equivalent in C. elegans the mutant SD551 (GA89),
a gain of function temperature sensitive mutant that is highly active at 20°C
but remains non-functional at 15°C.We were one of the first to identify the RTK MET as an important target in lung and
other cancers and our mechanistic, translational and clinical studies conducted over
the past 20 y have now yielded several small molecule chemotherapeutic drugs that
are now in various clinical trials. Also in this study, we utilized the non-functional MET
receptor kinase ortholog RB2088 (F11E6.8) that has a 900 base pairs deletion in the
kinase domain. Various RTKs that contribute to tumorigenesis are negatively
regulated by c-CBL, an E3 ubiquitin ligase. We recently reported that c-CBL
frequently suffers loss-of-function mutations in lung cancer and plays a key role in
tumorigenesis. Here, we
also utilized 3 (c-CBL ortholog) mutants: PS2728, PS1258 and MT13032, that are
non-functional.The mutants in general revealed lower egg-laying capacity and fertility compared to
wt worms that were further worsened by chronic nicotine treatment. This is in
agreement with the fact that cigarette smoking is associated with lower fecundity
rates, adverse reproductive outcomes and higher risk of IVF failures; however it
should be remembered that cigarette smoke has more than 1000 compounds of which the
principal addictive compound is nicotine. Our gene expression profiling studies revealed that
nicotine in general enhanced the expression of various kinases and phosphatases that
are marginally expressed in wt worms and play a role in cell proliferation and tumor
growth. This was however not apparent in SD551 mutant worm. One explanation could be
due to the fact that the expression of both kinases and phosphatases in general and
MAPK in particular were relatively high to start with as the mutation in question
confers gain-of-function in mutants grown at RT. The above result is in accordance
with the fact that constitutively activated RAS is oncogenic and plays a key role in
tumorigenesis. Most importantly, the multi vulval phenotype seen in SD551 worms is
exacerbated upon chronic treatment. In conclusion, our studies further strengthen
our contention that the simple soil nematode C. elegans can be used
to investigate some very basic aspects of cancer biology. It would now be useful to
determine if this model can be used to test novel inhibitory strategies for various
mutants and environmental exposure.
Authors: Graham W Warren; Michelle A Romano; Mahesh R Kudrimoti; Marcus E Randall; Ronald C McGarry; Anurag K Singh; Vivek M Rangnekar Journal: Int J Cancer Date: 2012-04-16 Impact factor: 7.396
Authors: C Dechanet; T Anahory; J C Mathieu Daude; X Quantin; L Reyftmann; S Hamamah; B Hedon; H Dechaud Journal: Hum Reprod Update Date: 2010-08-04 Impact factor: 15.610
Authors: Daniel V T Catenacci; Gustavo Cervantes; Soheil Yala; Erik A Nelson; Essam El-Hashani; Rajani Kanteti; Mohamed El Dinali; Rifat Hasina; Johannes Brägelmann; Tanguy Seiwert; Michele Sanicola; Les Henderson; Tatyana A Grushko; Olufunmilayo Olopade; Theodore Karrison; Yung-Jue Bang; Woo Ho Kim; Maria Tretiakova; Everett Vokes; David A Frank; Hedy L Kindler; Heather Huet; Ravi Salgia Journal: Cancer Biol Ther Date: 2011-07-01 Impact factor: 4.742