| Literature DB >> 26574748 |
Haixia Han1,2, Qiuxia Lei1,2, Yan Zhou1,2, Jinbo Gao1,2, Wei Liu1,2, Fuwei Li1,2, Qian Zhang1,2, Yan Lu1,2, Dingguo Cao1,2.
Abstract
BMP15 (Bone morphogenetic protein 15) is an oocyte-secreted growth factor required for ovarian follicle development and ovulation in mammals, but its effects on reproduction in chickens are unclear. In this study, the association between BMP15 polymorphisms and reproduction traits were analyzed, and its expression characteristics in different tissues were explored in LaiWu Black chickens. Three single nucleotide polymorphisms (SNPs) were identified in four hundred LaiWu Black chickens. One SNP (NC_006091.3:g.1773T>C) located in exon 2 which was significantly associated with egg weight at first egg (EWFE) (P = 0.0389), was novel. Diplotypes based on the three SNPs were found to be significantly associated with egg weight at age of 43W (EW43) (P = 0.0058). The chickens with H3H3 diplotype had their first egg 0.57 days later than chickens with H5H5 diplotype and 1.21 days-3.96 days earlier than the other five diplotype chickens. The egg production at age of 43W (E43), egg production at age of 46W (E46) and egg production at age of 48W (E48) for chickens with H3H3 diplotype were the highest among all the chickens, and the E48 of chickens with H3H3 diplotype had 11.83 eggs higher than chickens with H1H5 diplotype. RT-qPCR results showed that the expression level of BMP15 gene in ovarian follicle was in the order of 4 mm>6 mm -8 mm> 15 mm -19 mm> 23 mm -29 mm > 33 mm -34 mm in diameter. The mRNA level in follicles of 4 mm and 6-8 mm in diameter were significantly higher than that in the other follicles (P<0.01). In the same week, the highest mRNA level was found in the ovary, and it was significantly different from that found in the liver and oviduct (P<0.01). Our results indicate that BMP15 plays a vital role in the development of ovary and follicles, especially in the development of primary follicles. H3H3 may be an potential advantageous molecular marker for improving reproduction traits in chickens.Entities:
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Year: 2015 PMID: 26574748 PMCID: PMC4648498 DOI: 10.1371/journal.pone.0143298
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Primer parameters for SNPs identification and genotyping of BMP15.
| Primer | Sequences (5′–3′) | Length of products/bp | Annealing temp (°C) | Usage |
|---|---|---|---|---|
|
| F: GGGACCTCTTTCTGCTTTACCR: CATCACCCATTGCCACCA | 406 | 58.4 | SNPs identification |
|
| F: GGACAACAAGGGCAAGGGR: ATCGCATCGAGTGGAGACAA | 1096 | 59.4 | SNPs identification |
| NC_006091.3:g.474A>G | F: GGGACCTCTTTCTGCTTTACCR: CATCACCCATTGCCACCA | 406 | 58.4 | Genotyping with |
| NC_006091.3:g.594C>T | F: GGGTTTTAGCCCTGATCTTGCACTCR: ATCACCCATTGCCACCACCTTACCT | 517 | 58 | Genotyping with |
| NC_006091.3:g.1773T>C | F: TGAGCACCTTCTCCGTGTCAR: ATCCAATGGTCCCAACCC | 462 | 59.6 | Genotyping with |
Primer parameters for RT-qPCR.
| Gene | Primer sequence(5’-3’) | Annealing temp (°C) | Product size(bp) |
|---|---|---|---|
|
| F: TTGATGCTTGGTGGGTGGTTR: CACCATAGACTGCCTCGTTC | 60 | 177 |
|
| F: CCATCTATGAAGGCTACGCR: CTCGGCTGTGGTGGTGAA | 60 | 124 |
Genotypes and alleles frequencies at site NC_006091.3: g.474A>G, NC_006091.3:g.594C>T and NC_006091.3:g.1773T>C of BMP15 gene.
| SNPs | Location | Genotypes frequency | Allele frequency |
| |||
|---|---|---|---|---|---|---|---|
| NC_006091.3:g.474A>G | Exon1 | AA | AG | GG | A | G | |
| 0.742 | 0.235 | 0.023 | 0.860 | 0.140 | 0.6299 | ||
| NC_006091.3:g.594C>T | Exon1 | CC | CT | TT | C | T | |
| 0.265 | 0.505 | 0.230 | 0.518 | 0.482 | 0.8221 | ||
| NC_006091.3:g.1773T>C | Exon2 | TT | TC | CC | T | C | |
| 0.000 | 0.043 | 0.957 | 0.021 | 0.979 | 0.6641 | ||
P-value is the probability of the χ2-text for the Hardy-Weinberg equilibrium
Least-squares means and standard errors for reproduction traits of different genotypes in SNPs.
| Traits | P -Value | NC_006091.3:g.474A>G | ||
|---|---|---|---|---|
| H1H1 (295) | H1H2 (94) | H2H2(9) | ||
| EWFE(g) | 0.9359 | 30.47±0.25 | 30.29±0.44 | 30.22±1.45 |
| AFE | 0.6978 | 139.55±0.52 | 140.02±0.93 | 137.44±3.01 |
| EW43(g) | 0.0519 | 47.62±0.21a | 47.47±0.38a | 44.34±1.32b |
| E43 | 0.8166 | 117.85±1.25 | 116.78±2.20 | 114.00±7.44 |
| E46 | 0.7993 | 130.82±1.38 | 129.83±2.43 | 125.87±8.21 |
| E48 | 0.7956 | 139.19±1.47 | 137.81±2.59 | 134.50±8.74 |
| NC_006091.3:g.594C>T | ||||
| M1M1(105) | M1M2(201) | M2M2 (92) | ||
| EWFE (g) | 0.9881 | 30.37±0.42 | 30.45±0.30 | 30.42±0.45 |
| AFE | 0.0534 | 140.99±0.87a | 139.69±0.63a | 137.88±0.93b |
| EW43(g) | 0.0529 | 47.76±0.36a | 47.76±0.25a | 46.66±0.39b |
| E43 | 0.1772 | 114.60±2.06 | 117.87±1.50 | 120.25±2.28 |
| E46 | 0.1352 | 127.21±2.27b | 130.70±1.66ab | 134.00±2.52a |
| E48 | 0.0683 | 134.80±2.42b | 138.95±1.76ab | 143.19±2.68a |
| NC_006091.3:g.1773T>C | ||||
| N1N2(17) | N2N2(381) | |||
| EWFE (g) | 0.0389* | 28.29±1.05b | 30.51±0.22a | |
| AFE | 0.4846 | 138.11±2.19 | 139.68±0.46 | |
| EW43(g) | 0.2865 | 46.63±0.85 | 47.56±0.19 | |
| E43 | 0.8110 | 118.70±5.10 | 117.45±1.10 | |
| E46 | 0.7426 | 132.29±5.62 | 130.40±1.21 | |
| E48 | 0.5950 | 141.88±5.99 | 138.61±1.29 | |
The least square means within a row lacking a common lowercase superscript differ significantly (P<0.05).
The numbers in the brackets are the chicken individuals of respective genotypes.
Haplotypes and diplotypes inferred based on the 3single nucleotide polymorphisms.
| Haplotype | NC_006091.3:g.474A>G | NC_006091.3:g.594C>T | NC_006091.3:g.1773T>C | Frequency (%) | Diplotype | Frequency(%) | Diplotype | Frequency(%) |
|---|---|---|---|---|---|---|---|---|
| H1 | A | C | C | 36.125 | H1H1 | 12.750 | H3H5 | 12.500 |
| H2 | A | C | T | 2.000 | H1H2 | 1.000 | H3H6 | 0.250 |
| H3 | A | T | C | 47.750 | H1H3 | 36.000 | H4H6 | 0.250 |
| H4 | A | T | T | 0.125 | H1H5 | 9.750 | H5H5 | 2.250 |
| H5 | G | C | C | 13.750 | H2H3 | 2.250 | ||
| H6 | G | T | C | 0.250 | H2H5 | 0.750 | ||
| H3H3 | 22.250 |
Association of diplotypes of chicken BMP15 gene with the reproductive traits.
| Traits | EWFE (g) | AFE | EW43 (g) | E43 | E46 | E48 |
|---|---|---|---|---|---|---|
| P value | 0.8798 | 0.2606 | 0.0058 | 0.4918 | 0.3473 | 0.1953 |
| H1H1(50) |
| 141.26±1.27 |
| 114.98±2.98 | 127.90±3.28 | 135.50±3.48 |
| H1H3(143) | 30.50±0.36 | 139.82±0.75 | 47.97±0.30 | 117.13±1.80 | 129.56±1.98 | 137.62±2.10 |
| H1H5(39) | 30.07±0.70 |
| 47.59±0.59 |
|
|
|
| H2H3(9) |
| 139.22±3.00 | 46.04±1.15 | 118.00±7.02 | 131.77±7.73 | 141.22±8.21 |
| H3H3(89) | 30.43±0.46 | 138.01±0.95 | 46.62±0.40 |
|
|
|
| H3H5(50) | 30.58±0.61 | 139.40±1.27 | 47.33±0.51 | 119.85±3.04 | 133.77±3.34 | 142.43±3.55 |
| H5H5(9) | 30.22±1.45 |
|
| 114.00±7.45 | 125.87±8.20 | 134.50±8.71 |
1 Bold values represent the advantageous diplotypes
2 Italic values represent the negative diplotypes.
** P ≤ 0.01
Fig 1Relative expression level of BMP15 mRNA in follicles of 40w Laiwu Black chicken.
Fig 2The expression of a chicken BMP15 gene in liver, ovary and oviduct at the age of the same week.