Literature DB >> 26574348

An On-the-Fly Surface-Hopping Program JADE for Nonadiabatic Molecular Dynamics of Polyatomic Systems: Implementation and Applications.

Likai Du1,2,3, Zhenggang Lan1,2,3.   

Abstract

Nonadiabatic dynamics simulations have rapidly become an indispensable tool for understanding ultrafast photochemical processes in complex systems. Here, we present our recently developed on-the-fly nonadiabatic dynamics package, JADE, which allows researchers to perform nonadiabatic excited-state dynamics simulations of polyatomic systems at an all-atomic level. The nonadiabatic dynamics is based on Tully's surface-hopping approach. Currently, several electronic structure methods (CIS, TDHF, TDDFT(RPA/TDA), and ADC(2)) are supported, especially TDDFT, aiming at performing nonadiabatic dynamics on medium- to large-sized molecules. The JADE package has been interfaced with several quantum chemistry codes, including Turbomole, Gaussian, and Gamess (US). To consider environmental effects, the Langevin dynamics was introduced as an easy-to-use scheme into the standard surface-hopping dynamics. The JADE package is mainly written in Fortran for greater numerical performance and Python for flexible interface construction, with the intent of providing open-source, easy-to-use, well-modularized, and intuitive software in the field of simulations of photochemical and photophysical processes. To illustrate the possible applications of the JADE package, we present a few applications of excited-state dynamics for various polyatomic systems, such as the methaniminium cation, fullerene (C20), p-dimethylaminobenzonitrile (DMABN) and its primary amino derivative aminobenzonitrile (ABN), and 10-hydroxybenzo[h]quinoline (10-HBQ).

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Year:  2015        PMID: 26574348     DOI: 10.1021/ct501106d

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  9 in total

1.  COBRAMM 2.0 - A software interface for tailoring molecular electronic structure calculations and running nanoscale (QM/MM) simulations.

Authors:  Oliver Weingart; Artur Nenov; Piero Altoè; Ivan Rivalta; Javier Segarra-Martí; Irina Dokukina; Marco Garavelli
Journal:  J Mol Model       Date:  2018-09-03       Impact factor: 1.810

2.  Efficient and Flexible Computation of Many-Electron Wave Function Overlaps.

Authors:  Felix Plasser; Matthias Ruckenbauer; Sebastian Mai; Markus Oppel; Philipp Marquetand; Leticia González
Journal:  J Chem Theory Comput       Date:  2016-02-25       Impact factor: 6.006

3.  Direct Learning Hidden Excited State Interaction Patterns from ab initio Dynamics and Its Implication as Alternative Molecular Mechanism Models.

Authors:  Fang Liu; Likai Du; Dongju Zhang; Jun Gao
Journal:  Sci Rep       Date:  2017-08-18       Impact factor: 4.379

4.  Coupled wave-packets for non-adiabatic molecular dynamics: a generalization of Gaussian wave-packet dynamics to multiple potential energy surfaces.

Authors:  Alexander White; Sergei Tretiak; Dmitry Mozyrsky
Journal:  Chem Sci       Date:  2016-04-25       Impact factor: 9.825

5.  Tracking excited state decay mechanisms of pyrimidine nucleosides in real time.

Authors:  Rocío Borrego-Varillas; Artur Nenov; Piotr Kabaciński; Irene Conti; Lucia Ganzer; Aurelio Oriana; Vishal Kumar Jaiswal; Ines Delfino; Oliver Weingart; Cristian Manzoni; Ivan Rivalta; Marco Garavelli; Giulio Cerullo
Journal:  Nat Commun       Date:  2021-12-14       Impact factor: 14.919

6.  Micro-Solvated DMABN: Excited State Quantum Dynamics and Dual Fluorescence Spectra.

Authors:  Sandra Gómez; Esra N Soysal; Graham A Worth
Journal:  Molecules       Date:  2021-11-29       Impact factor: 4.411

7.  Aggregation-induced emission spectra of triphenylamine salicylaldehyde derivatives via excited-state intramolecular proton transfer revealed by molecular spectral and dynamics simulations.

Authors:  Qing Zhang; Yuanyuan Li; Zexing Cao; Chaoyuan Zhu
Journal:  RSC Adv       Date:  2021-11-18       Impact factor: 4.036

8.  Tuning ESIPT fluorophores into dual emitters.

Authors:  Cloé Azarias; Šimon Budzák; Adèle D Laurent; Gilles Ulrich; Denis Jacquemin
Journal:  Chem Sci       Date:  2016-02-23       Impact factor: 9.825

Review 9.  Nonadiabatic dynamics: The SHARC approach.

Authors:  Sebastian Mai; Philipp Marquetand; Leticia González
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-05-09
  9 in total

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