Literature DB >> 26573656

Diagnosis of Brain Metastases from Lung Cancer Using a Modified Electromagnetism like Mechanism Algorithm.

Kun-Huang Chen1, Kung-Jeng Wang2, Angelia Melani Adrian3, Kung-Min Wang4, Nai-Chia Teng5.   

Abstract

Brain metastases are commonly found in patients that are diagnosed with primary malignancy on their lung. Lung cancer patients with brain metastasis tend to have a poor survivability, which is less than 6 months in median. Therefore, an early and effective detection system for such disease is needed to help prolong the patients' survivability and improved their quality of life. A modified electromagnetism-like mechanism (EM) algorithm, MEM-SVM, is proposed by combining EM algorithm with support vector machine (SVM) as the classifier and opposite sign test (OST) as the local search technique. The proposed method is applied to 44 UCI and IDA datasets, and 5 cancers microarray datasets as preliminary experiment. In addition, this method is tested on 4 lung cancer microarray public dataset. Further, we tested our method on a nationwide dataset of brain metastasis from lung cancer (BMLC) in Taiwan. Since the nature of real medical dataset to be highly imbalanced, the synthetic minority over-sampling technique (SMOTE) is utilized to handle this problem. The proposed method is compared against another 8 popular benchmark classifiers and feature selection methods. The performance evaluation is based on the accuracy and Kappa index. For the 44 UCI and IDA datasets and 5 cancer microarray datasets, a non-parametric statistical test confirmed that MEM-SVM outperformed the other methods. For the 4 lung cancer public microarray datasets, MEM-SVM still achieved the highest mean value for accuracy and Kappa index. Due to the imbalanced property on the real case of BMLC dataset, all methods achieve good accuracy without significance difference among the methods. However, on the balanced BMLC dataset, MEM-SVM appears to be the best method with higher accuracy and Kappa index. We successfully developed MEM-SVM to predict the occurrence of brain metastasis from lung cancer with the combination of SMOTE technique to handle the class imbalance properties. The results confirmed that MEM-SVM has good diagnosis power and can be applied as an alternative diagnosis tool in with other medical tests for the early detection of brain metastasis from lung cancer.

Entities:  

Keywords:  Brain metastases; Electromagnetism like mechanism; Feature selection; Lung cancer; Support vector machine; Synthetic minority over-sampling technique

Mesh:

Year:  2015        PMID: 26573656     DOI: 10.1007/s10916-015-0367-3

Source DB:  PubMed          Journal:  J Med Syst        ISSN: 0148-5598            Impact factor:   4.460


  17 in total

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Journal:  Cancer Res       Date:  2002-06-01       Impact factor: 12.701

5.  Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses.

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Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-13       Impact factor: 11.205

6.  Gene-expression profiles predict survival of patients with lung adenocarcinoma.

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7.  Factors relating to pregnancy and birth and the risk of childhood brain tumors: results from an Australian case-control study.

Authors:  Kathryn R Greenop; Eve M Blair; Carol Bower; Bruce K Armstrong; Elizabeth Milne
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8.  An improved survivability prognosis of breast cancer by using sampling and feature selection technique to solve imbalanced patient classification data.

Authors:  Kung-Jeng Wang; Bunjira Makond; Kung-Min Wang
Journal:  BMC Med Inform Decis Mak       Date:  2013-11-09       Impact factor: 2.796

9.  Brain metastases admissions in Sweden between 1987 and 2006.

Authors:  K E Smedby; L Brandt; M L Bäcklund; P Blomqvist
Journal:  Br J Cancer       Date:  2009-10-13       Impact factor: 7.640

10.  Treatment of brain metastasis from lung cancer.

Authors:  Alexander Chi; Ritsuko Komaki
Journal:  Cancers (Basel)       Date:  2010-12-15       Impact factor: 6.639

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Journal:  J Med Syst       Date:  2020-02-10       Impact factor: 4.460

2.  Identification of DEP domain-containing proteins by a machine learning method and experimental analysis of their expression in human HCC tissues.

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3.  Prediction of G Protein-Coupled Receptors with SVM-Prot Features and Random Forest.

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4.  Construction and Validation of a Lung Cancer Diagnostic Model Based on 6-Gene Methylation Frequency in Blood, Clinical Features, and Serum Tumor Markers.

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Journal:  Comput Math Methods Med       Date:  2021-06-26       Impact factor: 2.238

  4 in total

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