Literature DB >> 26573232

A genome-wide association study identifies WT1 variant with better response to 5-fluorouracil, pirarubicin and cyclophosphamide neoadjuvant chemotherapy in breast cancer patients.

Lina Wu1, Lu Yao2, Hong Zhang1, Tao Ouyang2, Jinfeng Li2, Tianfeng Wang2, Zhaoqing Fan2, Tie Fan2, Benyao Lin2, C Cameron Yin3, Yuntao Xie2.   

Abstract

Breast cancer is believed to result from the interplay of genetic and non-genetic risk factors, and individual genetic variation may influence the efficacy of chemotherapy. Here we conducted a genome-wide association study to identify single nucleotide polymorphisms (SNPs) associated with response to anthracycline- and taxane-based neoadjuvant chemotherapy in breast cancer patients. In the discovery stage, we divided 92 patients who received anthracycline-based neoadjuvant chemotherapy into 2 groups according to pathologic response and performed a genome-wide study using Affymetrix SNP6.0 genechip. Of 389,795 SNPs associated with pathologic complete response (pCR), we identified 2 SNPs, rs6044100 and rs1799937, that were significantly associated with pCR after neoadjuvant chemotherapy. In the validation stage, genotype analysis of samples from an independent cohort of 401 patients who received anthracycline-based neoadjuvant regimens and 467 patients who received taxane-based regimens was performed using sequencing analysis. We found that only SNP rs1799937, located in the WT1 gene, was associated with pCR after anthracycline-based neoadjuvant therapy (AA vs GG; odds ratio [OR], 2.81; 95% confidence interval [CI], 1.13-6.98; P < 0.05) but not after taxane-based neoadjuvant therapy (AA vs GG; OR, 0.85; 95% CI, 0.36-2.04; P = 0.72). These results suggest that WT1 may be a potential target of anthracycline-based neoadjuvant therapy for breast cancer.

Entities:  

Keywords:  WT1; anthracycline; breast cancer; neoadjuvant chemotherapy; rs1799937

Mesh:

Substances:

Year:  2016        PMID: 26573232      PMCID: PMC4826264          DOI: 10.18632/oncotarget.5837

Source DB:  PubMed          Journal:  Oncotarget        ISSN: 1949-2553


INTRODUCTION

Breast cancer is the most common malignant neoplasm among women in the world. It is believed to result from a complex interplay of genetic and non-genetic risk factors. Linkage and family-based studies have shown that germline mutations of high- and moderate-penetrance genes such as BRCA1/2, PTEN, ATM, CHEK2, TP53, PALB2, and BRIP1 account for 20%–25% of the genetic component of breast cancer [1]. Genetic association studies, such as genome-wide association studies (GWASs), have identified low-penetrance common variants (predominantly single nucleotide polymorphisms [SNPs]) associated with breast cancer risk. Since the first 3 GWASs that identified SNPs associated with breast cancer susceptibility were conducted in early 2007 [2-4], over 80 loci associated with increased breast cancer risk have been found [5-16]. These studies have suggested that high- and moderate-penetrance genes and GWAS-identified low-penetrance common variants together may explain about 50% of the familial risk of breast cancer [17]. Accumulating evidence has shown that certain genetic variations are associated with response to chemotherapy in patients with lung cancer [18, 19]. However, genetic variants associated with tumor response to specific chemotherapy regimens in breast cancer have rarely been studied [20-22]. Neoadjuvant chemotherapy is increasingly used for operable primary breast cancer because it yields survival rate at least equal to those of adjuvant chemotherapy [23-25]. Some of the most effective cytotoxic agents against breast cancer are the anthracyclines, which have formed the backbone of most adjuvant and neoadjuvant regimens for more than 2 decades [23, 26–29]. Another class of effective cytotoxic agents, taxanes (such as paclitaxel and docetaxel), are also used as standard therapy for breast cancer, as monochemotherapy, in combination therapy, or in sequential therapy [30-32]. As neoadjuvant therapy, taxanes have produced dramatic increases in response rates [33-35]. Still, only a minority of patients achieve pathologic complete response (pCR) after receiving either anthracycline- or taxane-based neoadjuvant regimens. Given the lack of a preferred neoadjuvant treatment regimen, identifying which patients are most likely to respond to a specific regimen could significantly improve breast cancer treatment outcomes and facilitate the development of targeted therapies. Since GWASs have been successful in identifying low-penetrance common variants for breast cancer predisposition, several studies have investigated the potential roles of GWAS-identified SNPs in the choice of neoadjuvant therapy and evaluation of patient prognosis [18, 19]. In the current GWAS, we aimed to identify associations between SNPs associated with breast cancer susceptibility and response to anthracycline- and taxane-based neoadjuvant chemotherapy in patients with breast cancer.

RESULTS

Patient characteristics

The demographic and clinicopathologic characteristics of the 960 breast cancer patients who received neoadjuvant chemotherapy and were included in the discovery or validation cohort are shown in Table 1. In the discovery stage, the pCR rate was 32.6%. In the validation stage, the pCR rate was 15.5% in patients who received anthracycline-based neoadjuvant therapy and 17.1% in those who received a taxane-based regimen.
Table 1

Patient characteristics

CharacteristicNo. of patientsDiscoverycohort (N = 92)Validation cohortP value
Anthracycline (N = 401)Taxane (N = 467)
N%N%N%N%
Age (years)
 ≤ 5057159.56570.725062.325654.80.006*
 > 5038940.52729.315137.721145.2
Tumor size
≤ 2cm38140.02223.914737.321245.5< 0.001*
> 2cm57160.07076.124762.725454.5
Unknown8071
Tumor grade
 I9510.366.74511.6449.80.21
 II69174.76876.427771.234677.4
 III13915.01516.96717.25712.8
 Unknown3531220
Lymph node involvement
 Negative52555.46369.223057.623250.70.002*
 Positive42344.62830.816942.422649.3
 Unknown12129
Estrogen receptor status
 Negative37739.44448.415538.817838.20.18
 Positive57960.64751.624461.228861.8
 Unknown4121
Progesterone receptor status
 Negative47950.25156.720651.622247.70.23
 Positive47549.83943.319348.424352.3
 Unknown6222
HER2 status
 Negative69472.45661.529673.834273.40.05
 Positive26427.63538.510526.212426.6
 Unknown2101
Surgery type
 BCS40642.35155.417142.618439.40.017*
 Mastectomy55457.74144.623057.428360.6
Chemotherapy cycles
 ≥ 489793.492100.036190.044495.1< 0.001*
 < 4636.600.04010.0234.9
Adjuvant chemotherapy
 No33234.61516.311328.220443.7< 0.001*
 Yes62865.47783.728871.826356.3
Adjuvant endocrine therapy
 No39541.13538.016240.419842.40.68
 Yes56558.95762.023959.626957.6
Pathologic complete response
 non-pCR78882.16267.433984.538782.9< 0.001*
 pCR17217.93032.66215.58017.1

HER2, human epidermal growth factor receptor 2; BCS, breast-conserving surgery; pCR, pathologic complete response

A P value < 0.05 was considered statistically significant.

HER2, human epidermal growth factor receptor 2; BCS, breast-conserving surgery; pCR, pathologic complete response A P value < 0.05 was considered statistically significant.

Identification of SNPs

The discovery cohort included 92 patients who each received 4 cycles of the anthracycline-based CTF neoadjuvant regimen. pCR was used to differentiate cases from controls. All individuals had < 10% of missing genotypes, and all were genotyped as females based on X-chromosome genotypes, and therefore all were included. GWAS was performed using PLINK on genotype data from 30 patients with pCR and 62 patients with non-pCR. Of 389,795 SNPs included in the analysis, 351 SNPs showed significant associations with pCR. We then employed 3 additional criteria to select SNPs for inclusion in the validation stage. First, the 351 SNPs that showed significant association with pCR were confirmed using a genome-wide significance at P < 1e-03 (Figure 1). Second, the data set was narrowed down to 32 SNPs that are known to be related to genes that correlate with cancer using a search of gene annotation databases and published literature (ORs ranging from 2.89 [95% CI, 1.53–5.48] to 6.14 [95% CI, 2.07–18.20]) (Table 2). Third, using unadjusted univariate Cox proportional hazard models (P < 0.05), we ended up with only 2 SNPs with a pCR rate that was significantly higher for both homozygotes (Table 3).
Figure 1

Scatter plot of P values (shown as -log10) in association test of 389,795 single nucleotide polymorphismalleles with pathologic response status at the end of anthracycline-based neoadjuvant chemotherapy in discovery cohort of 92 breast cancer patients. Colors indicate chromosomes

Table 2

SNPs significantly associated with breast cancer in patients who received anthracycline-based CTF chemotherapy regimens in discovery cohort

MAF
SNPMinor alleleChr.PositionGeneLocationpCRnon-pCROR (95%CI)P value
rs6135795G2016534948KIF16BIntron0.620.284.07 (2.11–7.83)1.61 × 10−5*
rs4748316T1016779881RSU1Intron0.480.184.17 (2.10–8.27)2.55 × 10−5*
rs6686072C157936193DAB1Intron0.400.134.33 (2.07–9.06)4.98 × 10−5*
rs687660A1170111532PPFIA1Upstream0.320.085.10 (2.19–11.87)5.97 × 10−5*
rs3102072A120964066PINK1Intron0.620.313.61 (1.89–6.90)7.39 × 10−5*
rs6044100T2016524972KIF16BIntron0.420.154.05 (1.98–8.29)7.65 × 10−5*
rs9806453G1560943845RORAIntron0.670.373.46 (1.80–6.64)1.43 × 10−4*
rs6075070G2016536424KIF16BIntron0.420.163.80 (1.87–7.72)1.44 × 10−4*
rs4811431T2052031569TSHZ2Intron0.280.084.88 (2.02–11.77)1.78 × 10−4*
rs4580153T1681817239PLCG2Intron0.320.104.17 (1.86–9.35)2.84 × 10−4*
rs12481468C2043532438YWHABintron0.220.046.14(2.07–18.20)3.16 × 10−4*
rs1799937A1132410774WT1Intron0.470.213.33 (1.70–6.51)3.38 × 10−4*
rs1004895A2016540600KIF16BIntron0.400.163.54 (1.74–7.22)3.38 × 10−4*
rs32496A555641639MAP3K1Upstream0.680.403.24 (1.68–6.23)3.38 × 10−4*
rs16944877C12115459615TBX3Upstream0.350.133.77 (1.77–8.04)3.74 × 10−4*
rs12530912G7116127529CAV2Intron0.280.084.35 (1.85–10.25)3.96 × 10−4*
rs17191246C1560386336ANXA2Downstream0.270.084.49 (1.85–10.90)4.56 × 10−4*
rs10443217G157979666DAB1Intron0.380.143.64 (1.73–7.66)4.58 × 10−4*
rs1620195T1232084747H3F3CUpstream0.420.183.37 (1.68–6.76)4.58 × 10−4*
rs10493224A157938752DAB1Intron0.250.074.67 (1.85–11.77)5.14 × 10−4*
rs4833326C4126424441FAT4Downstream0.670.403.00 (1.57–5.74)7.41 × 10−4*
rs1467089T849960530SNAI2Upstream0.400.173.27 (1.61–6.62)7.52 × 10−4*
rs12151836G286601052KDM3AUpstream0.280.093.92 (1.70–9.04)8.24 × 10−4*
rs17588172G7116154015CAV2Downstream0.280.093.92 (1.70–9.04)8.24 × 10−4*
rs4631527G9110270036KLF4Upstream0.570.312.93 (1.55–5.57)8.29 × 10−4*
rs10857592C1049732975ARHGAP22Intron0.240.074.46 (1.75–11.36)9.02 × 10−4*
rs1080954T2016506016KIF16BIntron0.470.233.01 (1.55–5.85)9.07 × 10−4*
rs3821629C325620132RARBIntron0.520.272.94 (1.54–5.62)9.17 × 10−4*
rs3019286A899895405STK3Intron0.600.342.89 (1.53–5.48)9.59 × 10−4*
rs12039126A156681381PPAP2BDownstream0.270.084.00 (1.69–9.49)9.73 × 10−4*
rs7307249G12117077849MAP1LC3B2Downstream0.370.153.28 (1.59–6.78)9.80 × 10−4*
rs527912A120934283CDAIntron0.430.203.06 (1.55–6.03)9.85 × 10−4*

SNP, single nucleotide polymorphism; CTF, 5-fluorouracil, pirarubicin, and cyclophosphamide; Chr., chromosome; MAF, minor allele frequency; pCR, pathologic complete response; OR, odds ratio; CI, confidence interval

A P value < 0.05 was considered statistically significant.

The two SNPs examined in the validation phase were marked by bold.

Table 3

SNPs for which homozygosity was significantly associated with pCR in the discovery cohort

SNPGenotypeNo. (N = 92)%Pathologic responseP value
non-pCR (N = 62)pCR (N = 30)
No.%No.%
rs1799937A A1010.9440.0660.00.002*a
G A3437.01852.91647.1
G G4852.24083.3816.7
rs6044100C C5559.84683.6916.4< 0.001*b
T C3032.61446.71653.3
T T77.6228.6571.4

SNP, single nucleotide polymorphism; pCR, pathologic complete response

A P value < 0.05 was considered statistically significant

AA vs GG in rs11799937

CC vs TT in rs6044100.

SNP, single nucleotide polymorphism; CTF, 5-fluorouracil, pirarubicin, and cyclophosphamide; Chr., chromosome; MAF, minor allele frequency; pCR, pathologic complete response; OR, odds ratio; CI, confidence interval A P value < 0.05 was considered statistically significant. The two SNPs examined in the validation phase were marked by bold. SNP, single nucleotide polymorphism; pCR, pathologic complete response A P value < 0.05 was considered statistically significant AA vs GG in rs11799937 CC vs TT in rs6044100. One of these two SNPs, rs1799937, is located in an intron of the WT1 gene at 11p13; the A allele had an OR of 3.33 (95% CI, 1.70–6.51) compared with the G allele. The other SNP, rs6044100, is located in an intron of the KIF16B gene at 20p11, and the T allele had an OR of 4.05 (95% CI, 1.98–8.29) compared with the C allele. We found significantly higher pCR rates in patients with the rs1799937 AA genotype (60.0%) and the rs6044100 TT genotype (71.4%) than in patients with the rs1799937 GG genotype (16.7%) and the rs6044100 CC genotype (16.4%) (Table 3).

Association of rs1799937genotype and response to anthracycline-based regimens

Having confirming that the SNPs rs1799937 AA genotype and rs6044100 TT genotype are associated with pCR, we investigated the potential association between these two genetic variants and pCR after anthracycline-based neoadjuvant chemotherapy. We attempted to validate rs1799937 and rs6044100 in an independent cohort of 401 patients who received CTF regimens by sequencing analysis. The results showed that patients with the rs1799937 AA genotype benefited from anthracycline-based neoadjuvant chemotherapy more than patients with the GG genotype; the pCR rates of the AA versus GG genotypes were 26.7% and 11.5%, respectively (P = 0.035). Logistic regression models showed an odds ratio for patients with the rs1799937 AA genotype compared with those with the GG genotype of 2.81 (95% CI, 1.13–6.98; P = 0.026, Table 4). However, no association was identified between rs6044100 and pCR; the pCR rates after CTF therapy for patients with the TT genotype versus those with the CC genotype were 18.8% and 15.2%, respectively (P = 0.86).
Table 4

Associations between SNP genotypes and pCR in 401 validation cohort patients who underwent anthracycline-based (CTF) chemotherapy. Two SNPs were examined

SNPGenotypeNo. (N = 401)%Pathologic responseP valueOR (95%CI)P value
non-pCR (N = 339)pCR (N = 62)
No.%No.%
rs1799937A A307.52273.3826.70.035*2.81(1.13–6.98)0.026*a
G A15338.21248129191.81(1.01–3.23)0.046*b
G G21854.419388.52511.5
rs6044100C C22457.319084.83415.20.860.78(0.30–2.03)0.60c
T C13534.511383.72216.30.84(0.31–2.29)0.74d
T T328.22681.2618.8
Unknown10100

SNP, single nucleotide polymorphism; pCR, pathologic complete response; CTF, 5-fluorouracil, pirarubicin, and cyclophosphamide; OR, odds ratio; CI, confidence interval

A P value of < 0.05 was considered statistically significant.

AA vs GG

AG vs GG

CC vs TT

CT vs TT.

SNP, single nucleotide polymorphism; pCR, pathologic complete response; CTF, 5-fluorouracil, pirarubicin, and cyclophosphamide; OR, odds ratio; CI, confidence interval A P value of < 0.05 was considered statistically significant. AA vs GG AG vs GG CC vs TT CT vs TT.

Association between rs1799937genotype and response to taxane-based regimens

Further, we explored the association of rs1799937 with pCR in patients receiving taxane-based neoadjuvant chemotherapy. Rs1799937 genotypes were assessed by sequencing in an independent cohort of 467 patients who received taxane-based regimens. No association was observed between rs1799937 genotype and pCR status; the two homozygous genotypes showed similar pCR rates (17.1% vs 19.5%; P = 0.34, Table 5).
Table 5

Associations between SNP genotypes and pCR in 467 validation cohort patients who underwent taxane-based chemotherapy

SNPGenotypeNo.(N = 467)%Pathologic responseP valueOR (95%CI)P value
non-pCRpCR
No. (N = 387)%No.(N = 80)%
rs1799937A A418.83482.9717.10.340.85 (0.36–2.04)0.72a
G A18539.615985.92614.10.68 (0.40–1.14)0.14b
G G24151.619480.54719.5

pCR, pathologic complete response; SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval

A P value of < 0.05 was considered statistically significant.

AA vs GG

GA vs GG.

pCR, pathologic complete response; SNP, single nucleotide polymorphism; OR, odds ratio; CI, confidence interval A P value of < 0.05 was considered statistically significant. AA vs GG GA vs GG.

Association between rs1799937genotype and survival

Among the 493 patients who received CTF regimen, including 92 from the discovery stage and 401 from the validation stage, patients with the rs1799937 AA genotype had a slightly higher but not statistically significant 5-year recurrence-free survival (RFS) rate (89.3%; 95% CI, 79.5%-99.1%; AA vs GA+GG; P = 0.35) and 5-year distant recurrence-free survival (DRFS) rate (92.2%; 95% CI, 83.8%-100.1%; AA vs GA+GG; P = 0.31) than those with the rs1799937 GG genotype (RFS, 84.0%; 95% CI, 79.1%-88.9%; DRFS, 87.4%; 95% CI, 82.9%-91.9%; Figures 2a and 2b). However, no difference in RFS and DRFS was detected between rs1799937 AA versus GG genotype in the 467 breast cancer patients treated with taxane-based neoadjuvant chemotherapy (Figures 2c and 2d).
Figure 2

Kaplan-Meier estimates of recurrence-free survival (RFS) and distant recurrence-free survival (DRFS) by rs1799937 genotype and neoadjuvant chemotherapy regimen

Panel A. 10-year RFS by rs1799937 genotype in patients receiving anthracycline-based regimen. Panel B. 10-year DRFS by rs1799937 genotype in patients receiving anthracycline-based regimen. Panel C. 10-year RFS by rs1799937 genotype in patients receiving taxane-based regimen. Panel D. 10-year DRFS by rs1799937 genotype in patients receiving taxane-based regimen.

Kaplan-Meier estimates of recurrence-free survival (RFS) and distant recurrence-free survival (DRFS) by rs1799937 genotype and neoadjuvant chemotherapy regimen

Panel A. 10-year RFS by rs1799937 genotype in patients receiving anthracycline-based regimen. Panel B. 10-year DRFS by rs1799937 genotype in patients receiving anthracycline-based regimen. Panel C. 10-year RFS by rs1799937 genotype in patients receiving taxane-based regimen. Panel D. 10-year DRFS by rs1799937 genotype in patients receiving taxane-based regimen.

DISCUSSION

We performed a GWAS to assess genetic variants that may be associated with pCR in patients receiving neoadjuvant chemotherapy for breast cancer. We identified 1 SNP, rs1799937 A > G, as a genetic variant associated with response to anthracycline-based CTF neoadjuvant chemotherapy. Patients with the rs1799937 AA genotype showed significantly higher rates of pCR and better prognosis after treatment with CTF than patients with the GG genotype. However, we found that the AA allele of rs1799937 was not associated with sensitivity to taxane-based neoadjuvant chemotherapy regimens. The rs1799937 A > G SNP is located in an intron region of the WT1 gene at 11p13. WT1 encodes a transcription factor that contains 4 zinc-finger motifs at the C-terminus and plays an important role in organ development and cell survival [36]. In addition to regulating nuclear transcription, WT1 is also involved in RNA splicing and metabolism [37, 38]. WT1 was first identified as a tumor suppressor gene in Wilms' tumor. However, accumulating evidence has shown that overexpression of WT1 exerts an oncogenic effect in other tumors [36, 39, 40] and is linked to poor prognoses in leukemia and breast cancer [41, 42]. Previous studies have also shown that WT1 gene expresion is related to sensitivity to chemotherapy. Perugorria et al. have reported that WT1 knockdown markedly sensitized hepatocellular carcinoma cell lines to doxorubicin-induced apoptosis [43]. Interestingly, the effect of WT1 expression on apoptosis of hepatocellular carcinoma cells seems to be specific to doxorubicin, and not to other chemotherapeutic agents. Doxorubicin, an anthracycline, is a potent inhibitor of Top2 isozymes and exerts its genotoxic effect by impeding DNA duplication [44-36]. We speculate that rs1799937 may function by altering WT1 gene expression, thus rendering cancer cells in patients with the AA allele more sensitive to anthracycline-based chemotherapy. In summary, our results indicate that anthracycline-based neoadjuvant chemotherapy may benefit breast cancer patients with the rs1799937 AA allele more than those with the GG allele. Therefore, further investigation of WT1 as a potential target of chemotherapy for breast cancer is warranted.

MATERIALS AND METHODS

Patient selection

The GWAS included 960 patients with breast cancer who were treated at Peking University Cancer Hospital between October 2003 and November 2011. Written informed consent was obtained from all patients, and this study was approved by the Research and Ethical Committee of Peking University Cancer Hospital. The discovery stage included 92 patients from a pool of 493 patients who had received 4 cycles of an anthracycline-based neoadjuvant regimen consisting of cyclophosphamide, pirarubicin (THPADM), 5-fluorouracil (CTF). This regimen included pirarubicin 35 mg/m2 i.v. on day 1 and day 8, cyclophosphamide 500 mg/m2 i.v. on day 1 and day 8, and 5-fluorouracil 200 mg/m2/day i.v. continuous infusion for 28 days, every 4 weeks. All the 92 patients received an identical CTF regimen with the same dosage and same number of cycles. There was no bias in terms of any patient characteristics. Using pCR, defined as the absence of invasive breast tumor cells in the breast and axillary lymph nodes after completion of neoadjuvant chemotherapy, the patients were divided into 2 pathologic response groups with 30 in the pCR group and 62 in the non-pCR group. In the validation stage, 401 patients who had received 2–6 cycles of CTF and 467 patients who had received a taxane-based regimen using paclitaxel were included.

Genotyping methods and quality control

In the discovery stage, we isolated DNA from peripheral blood lymphocytes using phenol-chloroform extraction and ultrapurification. Genotyping was conducted using Affymetrix Genome-Wide Human SNP Array 6.0 chips (Santa Clara, CA). We performed systematic quality control on the raw genotyping data to filter out unqualified samples and SNPs. As quality control, we excluded DNA samples that failed to be genotyped as female based on X-chromosome genotypes. SNPs were excluded if (1) they were not mapped on autosomal chromosomes; (2) they had a call rate < 95%; (3) they had minor allele frequency < 0.01; (4) they deviated from the Hardy-Weinberg equilibrium at P < 1e−05; or (5) their genotyping clusters had poor resolution. These led to a total of 389,795 SNPs to be analyzed using a GWAS toolset PLINK [47]. The genotypes of the patients with and without pCR were compared. We selected SNPs that were (1) associated with pCR in the discovery stage at P < 1e-03; (2) located in genes that have been correlated with cancer in gene annotation databases and published literature; and (3) associated with pCR status in the discovery stage at P < 0.05 using unadjusted univariate Cox proportional hazard models. Finally, 2 SNPs, rs1799937 and rs6044100, were identified. For the validation phase, genomic DNA samples were extracted from peripheral blood lymphocytes of an additional 868 patients, including 401 who received anthracyclin-based regimens and 467 who received taxane-based regimens. Genotyping of the samples was conducted using a polymerase chain reaction/sequencing assay (ABI 3730 system, Applied Biosystems, Foster City, CA).

Statistical analysis

Association between SNPs and response to neoadjuvant chemotherapy in patients with breast cancer was assessed using logistic regression models and reported as odds ratios (ORs) and 95% confidence intervals (CIs). ORs were estimated for heterozygotes and homozygotes for the variant allele compared with homozygotes for the common allele. A logistic regression model was applied to determine whether a factor was an independent predictor of pCR in a multivariate analysis. Survival analysis was performed using the Kaplan-Meier curves. All statistical tests were two-sided. All statistical analyses were performed using SPSS 16.0 software (SPSS Inc., Chicago, IL).
  47 in total

1.  A protease pathway for the repair of topoisomerase II-DNA covalent complexes.

Authors:  Ailing Zhang; Yi Lisa Lyu; Chao-Po Lin; Nai Zhou; Anna M Azarova; Laurence M Wood; Leroy F Liu
Journal:  J Biol Chem       Date:  2006-09-13       Impact factor: 5.157

2.  High expression of Wilms' tumor suppressor gene predicts poor prognosis in breast cancer patients.

Authors:  Yasuo Miyoshi; Akiko Ando; Chiyomi Egawa; Tetsuya Taguchi; Yasuhiro Tamaki; Hiroya Tamaki; Haruo Sugiyama; Shinzaburo Noguchi
Journal:  Clin Cancer Res       Date:  2002-05       Impact factor: 12.531

3.  HER2/neu increases the expression of Wilms' Tumor 1 (WT1) protein to stimulate S-phase proliferation and inhibit apoptosis in breast cancer cells.

Authors:  Musaffe Tuna; Arturo Chavez-Reyes; Ana M Tari
Journal:  Oncogene       Date:  2005-02-24       Impact factor: 9.867

4.  Genome-wide association study identifies a new breast cancer susceptibility locus at 6q25.1.

Authors:  Wei Zheng; Jirong Long; Yu-Tang Gao; Chun Li; Ying Zheng; Yong-Bin Xiang; Wanqing Wen; Shawn Levy; Sandra L Deming; Jonathan L Haines; Kai Gu; Alecia Malin Fair; Qiuyin Cai; Wei Lu; Xiao-Ou Shu
Journal:  Nat Genet       Date:  2009-02-15       Impact factor: 38.330

Review 5.  Hereditary breast cancer: new genetic developments, new therapeutic avenues.

Authors:  Philippe M Campeau; William D Foulkes; Marc D Tischkowitz
Journal:  Hum Genet       Date:  2008-06-25       Impact factor: 4.132

Review 6.  The many facets of the Wilms' tumour gene, WT1.

Authors:  Peter Hohenstein; Nicholas D Hastie
Journal:  Hum Mol Genet       Date:  2006-10-15       Impact factor: 6.150

7.  Genome-wide association analysis identifies three new breast cancer susceptibility loci.

Authors:  Maya Ghoussaini; Olivia Fletcher; Kyriaki Michailidou; Clare Turnbull; Marjanka K Schmidt; Ed Dicks; Joe Dennis; Qin Wang; Manjeet K Humphreys; Craig Luccarini; Caroline Baynes; Don Conroy; Melanie Maranian; Shahana Ahmed; Kristy Driver; Nichola Johnson; Nicholas Orr; Isabel dos Santos Silva; Quinten Waisfisz; Hanne Meijers-Heijboer; Andre G Uitterlinden; Fernando Rivadeneira; Per Hall; Kamila Czene; Astrid Irwanto; Jianjun Liu; Heli Nevanlinna; Kristiina Aittomäki; Carl Blomqvist; Alfons Meindl; Rita K Schmutzler; Bertram Müller-Myhsok; Peter Lichtner; Jenny Chang-Claude; Rebecca Hein; Stefan Nickels; Dieter Flesch-Janys; Helen Tsimiklis; Enes Makalic; Daniel Schmidt; Minh Bui; John L Hopper; Carmel Apicella; Daniel J Park; Melissa Southey; David J Hunter; Stephen J Chanock; Annegien Broeks; Senno Verhoef; Frans B L Hogervorst; Peter A Fasching; Michael P Lux; Matthias W Beckmann; Arif B Ekici; Elinor Sawyer; Ian Tomlinson; Michael Kerin; Frederik Marme; Andreas Schneeweiss; Christof Sohn; Barbara Burwinkel; Pascal Guénel; Thérèse Truong; Emilie Cordina-Duverger; Florence Menegaux; Stig E Bojesen; Børge G Nordestgaard; Sune F Nielsen; Henrik Flyger; Roger L Milne; M Rosario Alonso; Anna González-Neira; Javier Benítez; Hoda Anton-Culver; Argyrios Ziogas; Leslie Bernstein; Christina Clarke Dur; Hermann Brenner; Heiko Müller; Volker Arndt; Christa Stegmaier; Christina Justenhoven; Hiltrud Brauch; Thomas Brüning; Shan Wang-Gohrke; Ursula Eilber; Thilo Dörk; Peter Schürmann; Michael Bremer; Peter Hillemanns; Natalia V Bogdanova; Natalia N Antonenkova; Yuri I Rogov; Johann H Karstens; Marina Bermisheva; Darya Prokofieva; Elza Khusnutdinova; Annika Lindblom; Sara Margolin; Arto Mannermaa; Vesa Kataja; Veli-Matti Kosma; Jaana M Hartikainen; Diether Lambrechts; Betul T Yesilyurt; Giuseppe Floris; Karin Leunen; Siranoush Manoukian; Bernardo Bonanni; Stefano Fortuzzi; Paolo Peterlongo; Fergus J Couch; Xianshu Wang; Kristen Stevens; Adam Lee; Graham G Giles; Laura Baglietto; Gianluca Severi; Catriona McLean; Grethe Grenaker Alnaes; Vessela Kristensen; Anne-Lise Børrensen-Dale; Esther M John; Alexander Miron; Robert Winqvist; Katri Pylkäs; Arja Jukkola-Vuorinen; Saila Kauppila; Irene L Andrulis; Gord Glendon; Anna Marie Mulligan; Peter Devilee; Christie J van Asperen; Rob A E M Tollenaar; Caroline Seynaeve; Jonine D Figueroa; Montserrat Garcia-Closas; Louise Brinton; Jolanta Lissowska; Maartje J Hooning; Antoinette Hollestelle; Rogier A Oldenburg; Ans M W van den Ouweland; Angela Cox; Malcolm W R Reed; Mitul Shah; Ania Jakubowska; Jan Lubinski; Katarzyna Jaworska; Katarzyna Durda; Michael Jones; Minouk Schoemaker; Alan Ashworth; Anthony Swerdlow; Jonathan Beesley; Xiaoqing Chen; Kenneth R Muir; Artitaya Lophatananon; Suthee Rattanamongkongul; Arkom Chaiwerawattana; Daehee Kang; Keun-Young Yoo; Dong-Young Noh; Chen-Yang Shen; Jyh-Cherng Yu; Pei-Ei Wu; Chia-Ni Hsiung; Annie Perkins; Ruth Swann; Louiza Velentzis; Diana M Eccles; Will J Tapper; Susan M Gerty; Nikki J Graham; Bruce A J Ponder; Georgia Chenevix-Trench; Paul D P Pharoah; Mark Lathrop; Alison M Dunning; Nazneen Rahman; Julian Peto; Douglas F Easton
Journal:  Nat Genet       Date:  2012-01-22       Impact factor: 38.330

8.  Comparisons between different polychemotherapy regimens for early breast cancer: meta-analyses of long-term outcome among 100,000 women in 123 randomised trials.

Authors:  R Peto; C Davies; J Godwin; R Gray; H C Pan; M Clarke; D Cutter; S Darby; P McGale; C Taylor; Y C Wang; J Bergh; A Di Leo; K Albain; S Swain; M Piccart; K Pritchard
Journal:  Lancet       Date:  2011-12-05       Impact factor: 79.321

9.  Newly discovered breast cancer susceptibility loci on 3p24 and 17q23.2.

Authors:  Shahana Ahmed; Gilles Thomas; Maya Ghoussaini; Catherine S Healey; Manjeet K Humphreys; Radka Platte; Jonathan Morrison; Melanie Maranian; Karen A Pooley; Robert Luben; Diana Eccles; D Gareth Evans; Olivia Fletcher; Nichola Johnson; Isabel dos Santos Silva; Julian Peto; Michael R Stratton; Nazneen Rahman; Kevin Jacobs; Ross Prentice; Garnet L Anderson; Aleksandar Rajkovic; J David Curb; Regina G Ziegler; Christine D Berg; Saundra S Buys; Catherine A McCarty; Heather Spencer Feigelson; Eugenia E Calle; Michael J Thun; W Ryan Diver; Stig Bojesen; Børge G Nordestgaard; Henrik Flyger; Thilo Dörk; Peter Schürmann; Peter Hillemanns; Johann H Karstens; Natalia V Bogdanova; Natalia N Antonenkova; Iosif V Zalutsky; Marina Bermisheva; Sardana Fedorova; Elza Khusnutdinova; Daehee Kang; Keun-Young Yoo; Dong Young Noh; Sei-Hyun Ahn; Peter Devilee; Christi J van Asperen; R A E M Tollenaar; Caroline Seynaeve; Montserrat Garcia-Closas; Jolanta Lissowska; Louise Brinton; Beata Peplonska; Heli Nevanlinna; Tuomas Heikkinen; Kristiina Aittomäki; Carl Blomqvist; John L Hopper; Melissa C Southey; Letitia Smith; Amanda B Spurdle; Marjanka K Schmidt; Annegien Broeks; Richard R van Hien; Sten Cornelissen; Roger L Milne; Gloria Ribas; Anna González-Neira; Javier Benitez; Rita K Schmutzler; Barbara Burwinkel; Claus R Bartram; Alfons Meindl; Hiltrud Brauch; Christina Justenhoven; Ute Hamann; Jenny Chang-Claude; Rebecca Hein; Shan Wang-Gohrke; Annika Lindblom; Sara Margolin; Arto Mannermaa; Veli-Matti Kosma; Vesa Kataja; Janet E Olson; Xianshu Wang; Zachary Fredericksen; Graham G Giles; Gianluca Severi; Laura Baglietto; Dallas R English; Susan E Hankinson; David G Cox; Peter Kraft; Lars J Vatten; Kristian Hveem; Merethe Kumle; Alice Sigurdson; Michele Doody; Parveen Bhatti; Bruce H Alexander; Maartje J Hooning; Ans M W van den Ouweland; Rogier A Oldenburg; Mieke Schutte; Per Hall; Kamila Czene; Jianjun Liu; Yuqing Li; Angela Cox; Graeme Elliott; Ian Brock; Malcolm W R Reed; Chen-Yang Shen; Jyh-Cherng Yu; Giu-Cheng Hsu; Shou-Tung Chen; Hoda Anton-Culver; Argyrios Ziogas; Irene L Andrulis; Julia A Knight; Jonathan Beesley; Ellen L Goode; Fergus Couch; Georgia Chenevix-Trench; Robert N Hoover; Bruce A J Ponder; David J Hunter; Paul D P Pharoah; Alison M Dunning; Stephen J Chanock; Douglas F Easton
Journal:  Nat Genet       Date:  2009-03-29       Impact factor: 38.330

10.  Genome-wide association study identifies novel breast cancer susceptibility loci.

Authors:  Douglas F Easton; Karen A Pooley; Alison M Dunning; Paul D P Pharoah; Deborah Thompson; Dennis G Ballinger; Jeffery P Struewing; Jonathan Morrison; Helen Field; Robert Luben; Nicholas Wareham; Shahana Ahmed; Catherine S Healey; Richard Bowman; Kerstin B Meyer; Christopher A Haiman; Laurence K Kolonel; Brian E Henderson; Loic Le Marchand; Paul Brennan; Suleeporn Sangrajrang; Valerie Gaborieau; Fabrice Odefrey; Chen-Yang Shen; Pei-Ei Wu; Hui-Chun Wang; Diana Eccles; D Gareth Evans; Julian Peto; Olivia Fletcher; Nichola Johnson; Sheila Seal; Michael R Stratton; Nazneen Rahman; Georgia Chenevix-Trench; Stig E Bojesen; Børge G Nordestgaard; Christen K Axelsson; Montserrat Garcia-Closas; Louise Brinton; Stephen Chanock; Jolanta Lissowska; Beata Peplonska; Heli Nevanlinna; Rainer Fagerholm; Hannaleena Eerola; Daehee Kang; Keun-Young Yoo; Dong-Young Noh; Sei-Hyun Ahn; David J Hunter; Susan E Hankinson; David G Cox; Per Hall; Sara Wedren; Jianjun Liu; Yen-Ling Low; Natalia Bogdanova; Peter Schürmann; Thilo Dörk; Rob A E M Tollenaar; Catharina E Jacobi; Peter Devilee; Jan G M Klijn; Alice J Sigurdson; Michele M Doody; Bruce H Alexander; Jinghui Zhang; Angela Cox; Ian W Brock; Gordon MacPherson; Malcolm W R Reed; Fergus J Couch; Ellen L Goode; Janet E Olson; Hanne Meijers-Heijboer; Ans van den Ouweland; André Uitterlinden; Fernando Rivadeneira; Roger L Milne; Gloria Ribas; Anna Gonzalez-Neira; Javier Benitez; John L Hopper; Margaret McCredie; Melissa Southey; Graham G Giles; Chris Schroen; Christina Justenhoven; Hiltrud Brauch; Ute Hamann; Yon-Dschun Ko; Amanda B Spurdle; Jonathan Beesley; Xiaoqing Chen; Arto Mannermaa; Veli-Matti Kosma; Vesa Kataja; Jaana Hartikainen; Nicholas E Day; David R Cox; Bruce A J Ponder
Journal:  Nature       Date:  2007-06-28       Impact factor: 49.962

View more
  5 in total

1.  Identification of a synonymous variant in TRIM59 gene for gastric cancer risk in a Chinese population.

Authors:  Dakui Luo; Younan Wang; Xiangkun Huan; Chi Huang; Chao Yang; Hao Fan; Zekuan Xu; Li Yang
Journal:  Oncotarget       Date:  2017-02-14

2.  Association of genetic variants in ATR-CHEK1 and ATM-CHEK2 pathway genes with risk of colorectal cancer in a Chinese population.

Authors:  Shijia Wang; Yue Zhang; Min Chen; Yong Wang; Yifei Feng; Ziwei Xu; Dongsheng Zhang; Yueming Sun; Zan Fu
Journal:  Oncotarget       Date:  2018-01-23

3.  LINA: A Linearizing Neural Network Architecture for Accurate First-Order and Second-Order Interpretations.

Authors:  Adrien Badré; Chongle Pan
Journal:  IEEE Access       Date:  2022-03-30       Impact factor: 3.476

4.  The impact of EGFR gene polymorphisms on the response and toxicity derived from neoadjuvant chemotherapy for breast cancer.

Authors:  Yan Wang; Ziping Wu; Liheng Zhou; Jinglu Lu; Yaohui Wang; Yanping Lin; Shuguang Xu; Yumei Ye; Jing Peng; Jie Zhang; Wenjin Yin; Jinsong Lu
Journal:  Gland Surg       Date:  2020-08

Review 5.  The role of WT1 in breast cancer: clinical implications, biological effects and molecular mechanism.

Authors:  Ye Zhang; Wen-Ting Yan; Ze-Yu Yang; Yan-Ling Li; Xuan-Ni Tan; Jun Jiang; Yi Zhang; Xiao-Wei Qi
Journal:  Int J Biol Sci       Date:  2020-02-24       Impact factor: 6.580

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.