Literature DB >> 26568704

Joint Estimation of Multiple Precision Matrices with Common Structures.

Wonyul Lee1, Yufeng Liu2.   

Abstract

Estimation of inverse covariance matrices, known as precision matrices, is important in various areas of statistical analysis. In this article, we consider estimation of multiple precision matrices sharing some common structures. In this setting, estimating each precision matrix separately can be suboptimal as it ignores potential common structures. This article proposes a new approach to parameterize each precision matrix as a sum of common and unique components and estimate multiple precision matrices in a constrained l1 minimization framework. We establish both estimation and selection consistency of the proposed estimator in the high dimensional setting. The proposed estimator achieves a faster convergence rate for the common structure in certain cases. Our numerical examples demonstrate that our new estimator can perform better than several existing methods in terms of the entropy loss and Frobenius loss. An application to a glioblastoma cancer data set reveals some interesting gene networks across multiple cancer subtypes.

Entities:  

Keywords:  covariance matrix; graphical model; high dimension; joint estimation; precision matrix

Year:  2015        PMID: 26568704      PMCID: PMC4643293     

Source DB:  PubMed          Journal:  J Mach Learn Res        ISSN: 1532-4435            Impact factor:   3.654


  9 in total

1.  Sparse inverse covariance estimation with the graphical lasso.

Authors:  Jerome Friedman; Trevor Hastie; Robert Tibshirani
Journal:  Biostatistics       Date:  2007-12-12       Impact factor: 5.899

2.  Joint estimation of multiple graphical models.

Authors:  Jian Guo; Elizaveta Levina; George Michailidis; Ji Zhu
Journal:  Biometrika       Date:  2011-02-09       Impact factor: 2.445

3.  Multiple Response Regression for Gaussian Mixture Models with Known Labels.

Authors:  Wonyul Lee; Ying Du; Wei Sun; D Neil Hayes; Yufeng Liu
Journal:  Stat Anal Data Min       Date:  2012-12-01       Impact factor: 1.051

4.  NETWORK EXPLORATION VIA THE ADAPTIVE LASSO AND SCAD PENALTIES.

Authors:  Jianqing Fan; Yang Feng; Yichao Wu
Journal:  Ann Appl Stat       Date:  2009-06-01       Impact factor: 2.083

5.  Sparsistency and Rates of Convergence in Large Covariance Matrix Estimation.

Authors:  Clifford Lam; Jianqing Fan
Journal:  Ann Stat       Date:  2009       Impact factor: 4.028

6.  Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1.

Authors:  Roel G W Verhaak; Katherine A Hoadley; Elizabeth Purdom; Victoria Wang; Yuan Qi; Matthew D Wilkerson; C Ryan Miller; Li Ding; Todd Golub; Jill P Mesirov; Gabriele Alexe; Michael Lawrence; Michael O'Kelly; Pablo Tamayo; Barbara A Weir; Stacey Gabriel; Wendy Winckler; Supriya Gupta; Lakshmi Jakkula; Heidi S Feiler; J Graeme Hodgson; C David James; Jann N Sarkaria; Cameron Brennan; Ari Kahn; Paul T Spellman; Richard K Wilson; Terence P Speed; Joe W Gray; Matthew Meyerson; Gad Getz; Charles M Perou; D Neil Hayes
Journal:  Cancer Cell       Date:  2010-01-19       Impact factor: 31.743

7.  The joint graphical lasso for inverse covariance estimation across multiple classes.

Authors:  Patrick Danaher; Pei Wang; Daniela M Witten
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2014-03       Impact factor: 4.488

8.  Partial Correlation Estimation by Joint Sparse Regression Models.

Authors:  Jie Peng; Pei Wang; Nengfeng Zhou; Ji Zhu
Journal:  J Am Stat Assoc       Date:  2009-06-01       Impact factor: 5.033

9.  Comprehensive genomic characterization defines human glioblastoma genes and core pathways.

Authors: 
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962

  9 in total
  5 in total

1.  Multiple Matrix Gaussian Graphs Estimation.

Authors:  Yunzhang Zhu; Lexin Li
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2018-06-14       Impact factor: 4.488

2.  Joint Estimation of Multiple Dependent Gaussian Graphical Models with Applications to Mouse Genomics.

Authors:  Yuying Xie; Yufeng Liu; William Valdar
Journal:  Biometrika       Date:  2016-09       Impact factor: 2.445

3.  A random covariance model for bi-level graphical modeling with application to resting-state fMRI data.

Authors:  Lin Zhang; Andrew DiLernia; Karina Quevedo; Jazmin Camchong; Kelvin Lim; Wei Pan
Journal:  Biometrics       Date:  2020-09-11       Impact factor: 2.571

4.  Differential network analysis from cross-platform gene expression data.

Authors:  Xiao-Fei Zhang; Le Ou-Yang; Xing-Ming Zhao; Hong Yan
Journal:  Sci Rep       Date:  2016-09-28       Impact factor: 4.379

5.  Multi-subject hierarchical inverse covariance modelling improves estimation of functional brain networks.

Authors:  Giles L Colclough; Mark W Woolrich; Samuel J Harrison; Pedro A Rojas López; Pedro A Valdes-Sosa; Stephen M Smith
Journal:  Neuroimage       Date:  2018-05-07       Impact factor: 6.556

  5 in total

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