Literature DB >> 26567876

QuBiLs-MAS method in early drug discovery and rational drug identification of antifungal agents.

R Medina Marrero1,2, Y Marrero-Ponce1,3,4,5, S J Barigye1,6, Y Echeverría Díaz1, R Acevedo-Barrios3, G M Casañola-Martín1,4,7, M García Bernal2, F Torrens8, F Pérez-Giménez4.   

Abstract

The QuBiLs-MAS approach is used for the in silico modelling of the antifungal activity of organic molecules. To this effect, non-stochastic (NS) and simple-stochastic (SS) atom-based quadratic indices are used to codify chemical information for a comprehensive dataset of 2478 compounds having a great structural variability, with 1087 of them being antifungal agents, covering the broadest antifungal mechanisms of action known so far. The NS and SS index-based antifungal activity classification models obtained using linear discriminant analysis (LDA) yield correct classification percentages of 90.73% and 92.47%, respectively, for the training set. Additionally, these models are able to correctly classify 92.16% and 87.56% of 706 compounds in an external test set. A comparison of the statistical parameters of the QuBiLs-MAS LDA-based models with those for models reported in the literature reveals comparable to superior performance, although the latter were built over much smaller and less diverse datasets, representing fewer mechanisms of action. It may therefore be inferred that the QuBiLs-MAS method constitutes a valuable tool useful in the design and/or selection of new and broad spectrum agents against life-threatening fungal infections.

Entities:  

Keywords:  QSAR model; QuBiLs-MAS software; atom-based quadratic indices; linear discriminant analysis; virtual screening, antifungal agent

Mesh:

Substances:

Year:  2015        PMID: 26567876     DOI: 10.1080/1062936X.2015.1104517

Source DB:  PubMed          Journal:  SAR QSAR Environ Res        ISSN: 1026-776X            Impact factor:   3.000


  5 in total

Review 1.  Trehalose pathway as an antifungal target.

Authors:  John R Perfect; Jennifer L Tenor; Yi Miao; Richard G Brennan
Journal:  Virulence       Date:  2016-06-01       Impact factor: 5.882

2.  Use of big data in drug development for precision medicine: an update.

Authors:  Tongqi Qian; Shijia Zhu; Yujin Hoshida
Journal:  Expert Rev Precis Med Drug Dev       Date:  2019-05-20

3.  PTML Modeling for Pancreatic Cancer Research: In Silico Design of Simultaneous Multi-Protein and Multi-Cell Inhibitors.

Authors:  Valeria V Kleandrova; Alejandro Speck-Planche
Journal:  Biomedicines       Date:  2022-02-18

4.  Choquet integral-based fuzzy molecular characterizations: when global definitions are computed from the dependency among atom/bond contributions (LOVIs/LOEIs).

Authors:  César R García-Jacas; Lisset Cabrera-Leyva; Yovani Marrero-Ponce; José Suárez-Lezcano; Fernando Cortés-Guzmán; Mario Pupo-Meriño; Ricardo Vivas-Reyes
Journal:  J Cheminform       Date:  2018-10-25       Impact factor: 5.514

5.  Multi-Target Chemometric Modelling, Fragment Analysis and Virtual Screening with ERK Inhibitors as Potential Anticancer Agents.

Authors:  Amit Kumar Halder; Amal Kanta Giri; Maria Natália Dias Soeiro Cordeiro
Journal:  Molecules       Date:  2019-10-30       Impact factor: 4.411

  5 in total

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