Literature DB >> 26567655

Solvation free-energy pressure corrections in the three dimensional reference interaction site model.

Volodymyr Sergiievskyi1, Guillaume Jeanmairet2, Maximilien Levesque3, Daniel Borgis3.   

Abstract

Solvation free energies are efficiently predicted by molecular density functional theory if one corrects the overpressure introduced by the usual homogeneous reference fluid approximation. Sergiievskyi et al. [J. Phys. Chem. Lett. 5, 1935-1942 (2014)] recently derived the rigorous compensation of this excess of pressure (referred as "pressure correction" or PC) and proposed an empirical "ideal gas" supplementary correction (referred as "advanced pressure correction" or PC+) that further enhances the calculated solvation free energies. In a recent paper [M. Misin, M. V. Fedorov, and D. S. Palmer, J. Chem. Phys. 142, 091105 (2015)], those corrections were applied to solvation free energy calculations using the three-dimensional reference interaction site model (3D-RISM). As for classical DFT, PC and PC+ improve greatly the predictions of 3D-RISM, but PC+ is described as decreasing the accuracy. In this article, we derive rigorously the expression of the pressure in 3D-RISM as well as the associated PC and PC+. This provides a consistent way to correct the solvation free-energies calculated by 3D-RISM method.

Entities:  

Year:  2015        PMID: 26567655     DOI: 10.1063/1.4935065

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  10 in total

1.  The SAMPL6 challenge on predicting aqueous pKa values from EC-RISM theory.

Authors:  Nicolas Tielker; Lukas Eberlein; Stefan Güssregen; Stefan M Kast
Journal:  J Comput Aided Mol Des       Date:  2018-08-02       Impact factor: 3.686

2.  The SAMPL5 challenge for embedded-cluster integral equation theory: solvation free energies, aqueous pK a, and cyclohexane-water log D.

Authors:  Nicolas Tielker; Daniel Tomazic; Jochen Heil; Thomas Kloss; Sebastian Ehrhart; Stefan Güssregen; K Friedemann Schmidt; Stefan M Kast
Journal:  J Comput Aided Mol Des       Date:  2016-08-23       Impact factor: 3.686

3.  SAMPL5: 3D-RISM partition coefficient calculations with partial molar volume corrections and solute conformational sampling.

Authors:  Tyler Luchko; Nikolay Blinov; Garrett C Limon; Kevin P Joyce; Andriy Kovalenko
Journal:  J Comput Aided Mol Des       Date:  2016-09-01       Impact factor: 3.686

4.  Solvation Thermodynamics from the Perspective of Endpoints DFT.

Authors:  Ronald M Levy; Nobuyuki Matubayasi; Bin W Zhang
Journal:  J Phys Chem B       Date:  2020-12-11       Impact factor: 2.991

5.  Spatially-Decomposed Free Energy of Solvation Based on the Endpoint Density-Functional Method.

Authors:  Yoshiki Ishii; Naoki Yamamoto; Nobuyuki Matubayasi; Bin W Zhang; Di Cui; Ronald M Levy
Journal:  J Chem Theory Comput       Date:  2019-04-16       Impact factor: 6.006

6.  Small molecule hydration energy and entropy from 3D-RISM.

Authors:  J Johnson; D A Case; T Yamazaki; S Gusarov; A Kovalenko; T Luchko
Journal:  J Phys Condens Matter       Date:  2016-07-01       Impact factor: 2.333

7.  The SAMPL6 challenge on predicting octanol-water partition coefficients from EC-RISM theory.

Authors:  Nicolas Tielker; Daniel Tomazic; Lukas Eberlein; Stefan Güssregen; Stefan M Kast
Journal:  J Comput Aided Mol Des       Date:  2020-01-24       Impact factor: 3.686

8.  Implementation and Optimization of the Embedded Cluster Reference Interaction Site Model with Atomic Charges.

Authors:  Ádám Ganyecz; Mihály Kállay
Journal:  J Phys Chem A       Date:  2022-04-08       Impact factor: 2.944

9.  Quantum-mechanical property prediction of solvated drug molecules: what have we learned from a decade of SAMPL blind prediction challenges?

Authors:  Nicolas Tielker; Lukas Eberlein; Gerhard Hessler; K Friedemann Schmidt; Stefan Güssregen; Stefan M Kast
Journal:  J Comput Aided Mol Des       Date:  2020-10-20       Impact factor: 3.686

Review 10.  Biomolecular Simulations with the Three-Dimensional Reference Interaction Site Model with the Kovalenko-Hirata Closure Molecular Solvation Theory.

Authors:  Dipankar Roy; Andriy Kovalenko
Journal:  Int J Mol Sci       Date:  2021-05-11       Impact factor: 5.923

  10 in total

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