Literature DB >> 26567649

A parallel algorithm for implicit depletant simulations.

Jens Glaser1, Andrew S Karas1, Sharon C Glotzer1.   

Abstract

We present an algorithm to simulate the many-body depletion interaction between anisotropic colloids in an implicit way, integrating out the degrees of freedom of the depletants, which we treat as an ideal gas. Because the depletant particles are statistically independent and the depletion interaction is short-ranged, depletants are randomly inserted in parallel into the excluded volume surrounding a single translated and/or rotated colloid. A configurational bias scheme is used to enhance the acceptance rate. The method is validated and benchmarked both on multi-core processors and graphics processing units for the case of hard spheres, hemispheres, and discoids. With depletants, we report novel cluster phases in which hemispheres first assemble into spheres, which then form ordered hcp/fcc lattices. The method is significantly faster than any method without cluster moves and that tracks depletants explicitly, for systems of colloid packing fraction ϕc < 0.50, and additionally enables simulation of the fluid-solid transition.

Entities:  

Year:  2015        PMID: 26567649     DOI: 10.1063/1.4935175

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Depletion-driven crystallization of cubic colloids sedimented on a surface.

Authors:  Harold W Hatch; William P Krekelberg; Steven D Hudson; Vincent K Shen
Journal:  J Chem Phys       Date:  2016-05-21       Impact factor: 3.488

2.  Phase behaviour of colloidal superballs mixed with non-adsorbing polymers.

Authors:  Álvaro González García; Joeri Opdam; Remco Tuinier
Journal:  Eur Phys J E Soft Matter       Date:  2018-09-21       Impact factor: 1.890

3.  Metastable orientational order of colloidal discoids.

Authors:  Lilian C Hsiao; Benjamin A Schultz; Jens Glaser; Michael Engel; Megan E Szakasits; Sharon C Glotzer; Michael J Solomon
Journal:  Nat Commun       Date:  2015-10-07       Impact factor: 14.919

4.  Monte Carlo simulation of cylinders with short-range attractions.

Authors:  Harold W Hatch; Nathan A Mahynski; Ryan P Murphy; Marco A Blanco; Vincent K Shen
Journal:  AIP Adv       Date:  2018-09-12       Impact factor: 1.548

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.