Literature DB >> 26567170

Putting chromatin in its place: the pioneer factor NeuroD1 modulates chromatin state to drive cell fate decisions.

Alexander Glahs1, Robert P Zinzen1.   

Abstract

Cell fate decisions require the deployment of distinct transcriptional programmes - how this is controlled and orchestrated is a key question from basic developmental biology to regenerative medicine. In this issue of The EMBO Journal, Pataskar and Jung et al (Pataskar et al, 2015) demonstrate how the transcription factor NeuroD1 acts genome-wide to elicit a specific neurogenic programme, including differentiation and migration. Much of that activity is due to NeuroD1 acting as a pioneer factor. NeuroD1 is able to bind its targets within repressive chromatin and can induce a more open chromatin state amenable to cell type‐specific regulation.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26567170      PMCID: PMC4718001          DOI: 10.15252/embj.201593324

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  11 in total

1.  Control of pancreas and liver gene expression by HNF transcription factors.

Authors:  Duncan T Odom; Nora Zizlsperger; D Benjamin Gordon; George W Bell; Nicola J Rinaldi; Heather L Murray; Tom L Volkert; Jörg Schreiber; P Alexander Rolfe; David K Gifford; Ernest Fraenkel; Graeme I Bell; Richard A Young
Journal:  Science       Date:  2004-02-27       Impact factor: 47.728

2.  NeuroD1 reprograms chromatin and transcription factor landscapes to induce the neuronal program.

Authors:  Abhijeet Pataskar; Johannes Jung; Pawel Smialowski; Florian Noack; Federico Calegari; Tobias Straub; Vijay K Tiwari
Journal:  EMBO J       Date:  2015-10-29       Impact factor: 11.598

3.  Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells.

Authors:  Annie Yang; Zhou Zhu; Philipp Kapranov; Frank McKeon; George M Church; Thomas R Gingeras; Kevin Struhl
Journal:  Mol Cell       Date:  2006-11-17       Impact factor: 17.970

4.  Pioneer transcription factors target partial DNA motifs on nucleosomes to initiate reprogramming.

Authors:  Abdenour Soufi; Meilin Fernandez Garcia; Artur Jaroszewicz; Nebiyu Osman; Matteo Pellegrini; Kenneth S Zaret
Journal:  Cell       Date:  2015-04-16       Impact factor: 41.582

5.  Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.

Authors:  Yi Cao; Zizhen Yao; Deepayan Sarkar; Michael Lawrence; Gilson J Sanchez; Maura H Parker; Kyle L MacQuarrie; Jerry Davison; Martin T Morgan; Walter L Ruzzo; Robert C Gentleman; Stephen J Tapscott
Journal:  Dev Cell       Date:  2010-04-20       Impact factor: 12.270

6.  Conversion of Xenopus ectoderm into neurons by NeuroD, a basic helix-loop-helix protein.

Authors:  J E Lee; S M Hollenberg; L Snider; D L Turner; N Lipnick; H Weintraub
Journal:  Science       Date:  1995-05-12       Impact factor: 47.728

Review 7.  Pioneer transcription factors: establishing competence for gene expression.

Authors:  Kenneth S Zaret; Jason S Carroll
Journal:  Genes Dev       Date:  2011-11-01       Impact factor: 11.361

8.  Dynamic CRM occupancy reflects a temporal map of developmental progression.

Authors:  Bartek Wilczyński; Eileen E M Furlong
Journal:  Mol Syst Biol       Date:  2010-06-22       Impact factor: 11.429

9.  Insm1 cooperates with Neurod1 and Foxa2 to maintain mature pancreatic β-cell function.

Authors:  Shiqi Jia; Andranik Ivanov; Dinko Blasevic; Thomas Müller; Bettina Purfürst; Wei Sun; Wei Chen; Matthew N Poy; Nikolaus Rajewsky; Carmen Birchmeier
Journal:  EMBO J       Date:  2015-03-31       Impact factor: 11.598

Review 10.  Pioneer transcription factors in cell reprogramming.

Authors:  Makiko Iwafuchi-Doi; Kenneth S Zaret
Journal:  Genes Dev       Date:  2014-12-15       Impact factor: 11.361

View more
  1 in total

1.  TFAP2 paralogs regulate melanocyte differentiation in parallel with MITF.

Authors:  Hannah E Seberg; Eric Van Otterloo; Stacie K Loftus; Huan Liu; Greg Bonde; Ramakrishna Sompallae; Derek E Gildea; Juan F Santana; J Robert Manak; William J Pavan; Trevor Williams; Robert A Cornell
Journal:  PLoS Genet       Date:  2017-03-01       Impact factor: 5.917

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.