Literature DB >> 26566828

Exciting journey of 10 years from genomes to fields and markets: Some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut.

Rajeev K Varshney1.   

Abstract

Legume crops such as chickpea, pigeonpea and groundnut, mostly grown in marginal environments, are the major source of nutrition and protein to the human population in Asia and Sub-Saharan Africa. These crops, however, have a low productivity, mainly due to their exposure to several biotic and abiotic stresses in the marginal environments. Until 2005, these crops had limited genomics resources and molecular breeding was very challenging. During the last decade (2005-2015), ICRISAT led demand-driven innovations in genome science and translated the massive genome information in breeding. For instance, large-scale genomic resources including draft genome assemblies, comprehensive genetic and physical maps, thousands of SSR markers, millions of SNPs, several high-throughput as well as low cost marker genotyping platforms have been developed in these crops. After mapping several breeding related traits, several success stories of translational genomics have become available in these legumes. These include development of superior lines with enhanced drought tolerance in chickpea, enhanced and pyramided resistance to Fusarium wilt and Ascochyta blight in chickpea, enhanced resistance to leaf rust in groundnut, improved oil quality in groundnut and utilization of markers for assessing purity of hybrids/parental lines in pigeonpea. Some of these stories together with future prospects have been discussed.
Copyright © 2015 The Author. Published by Elsevier Ireland Ltd.. All rights reserved.

Entities:  

Keywords:  Chickpea; Genomic resources; Genomics-assisted breeding; Groundnut; Legumes; Pigeonpea

Mesh:

Year:  2015        PMID: 26566828     DOI: 10.1016/j.plantsci.2015.09.009

Source DB:  PubMed          Journal:  Plant Sci        ISSN: 0168-9452            Impact factor:   4.729


  40 in total

1.  Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea.

Authors:  Akash Sharma; Udita Basu; Naveen Malik; Anurag Daware; Virevol Thakro; Laxmi Narnoliya; Deepak Bajaj; Shailesh Tripathi; V S Hegde; Hari D Upadhyaya; Akhilesh K Tyagi; Swarup K Parida
Journal:  Funct Integr Genomics       Date:  2019-06-08       Impact factor: 3.410

2.  Detection of a major QTL and development of KASP markers for seed weight by combining QTL-seq, QTL-mapping and RNA-seq in peanut.

Authors:  Zhihui Wang; Liying Yan; Yuning Chen; Xin Wang; Dongxin Huai; Yanping Kang; Huifang Jiang; Kede Liu; Yong Lei; Boshou Liao
Journal:  Theor Appl Genet       Date:  2022-03-09       Impact factor: 5.699

3.  A high-density SNP-based linkage map using genotyping-by-sequencing and its utilization for improved genome assembly of chickpea (Cicer arietinum L.).

Authors:  Rashmi Gaur; Subodh Verma; Seema Pradhan; Heena Ambreen; Sabhyata Bhatia
Journal:  Funct Integr Genomics       Date:  2020-08-27       Impact factor: 3.410

Review 4.  African Orphan Crops Consortium (AOCC): status of developing genomic resources for African orphan crops.

Authors:  Prasad S Hendre; Samuel Muthemba; Robert Kariba; Alice Muchugi; Yuan Fu; Yue Chang; Bo Song; Huan Liu; Min Liu; Xuezhu Liao; Sunil Kumar Sahu; Sibo Wang; Linzhou Li; Haorong Lu; Shufeng Peng; Shifeng Cheng; Xun Xu; Huanming Yang; Jian Wang; Xin Liu; Anthony Simons; Howard-Yana Shapiro; Rita H Mumm; Allen Van Deynze; Ramni Jamnadass
Journal:  Planta       Date:  2019-05-09       Impact factor: 4.116

5.  A deep convolutional neural network approach for predicting phenotypes from genotypes.

Authors:  Wenlong Ma; Zhixu Qiu; Jie Song; Jiajia Li; Qian Cheng; Jingjing Zhai; Chuang Ma
Journal:  Planta       Date:  2018-08-12       Impact factor: 4.116

6.  QTL mapping for Fusarium wilt resistance based on the whole-genome resequencing and their association with functional genes in Raphanus sativus.

Authors:  Yinbo Ma; Sushil Satish Chhapekar; Lu Lu; Xiaona Yu; Seungho Kim; Soo Min Lee; Tae Hyoung Gan; Gyung Ja Choi; Yong Pyo Lim; Su Ryun Choi
Journal:  Theor Appl Genet       Date:  2021-08-13       Impact factor: 5.699

Review 7.  Advancing crop genomics from lab to field.

Authors:  Michael D Purugganan; Scott A Jackson
Journal:  Nat Genet       Date:  2021-05-06       Impact factor: 38.330

Review 8.  Genomic Tools in Groundnut Breeding Program: Status and Perspectives.

Authors:  P Janila; Murali T Variath; Manish K Pandey; Haile Desmae; Babu N Motagi; Patrick Okori; Surendra S Manohar; A L Rathnakumar; T Radhakrishnan; Boshou Liao; Rajeev K Varshney
Journal:  Front Plant Sci       Date:  2016-03-17       Impact factor: 5.753

Review 9.  Potential Uses of Wild Germplasms of Grain Legumes for Crop Improvement.

Authors:  Nacira Muñoz; Ailin Liu; Leo Kan; Man-Wah Li; Hon-Ming Lam
Journal:  Int J Mol Sci       Date:  2017-02-04       Impact factor: 5.923

Review 10.  Emerging Genomic Tools for Legume Breeding: Current Status and Future Prospects.

Authors:  Manish K Pandey; Manish Roorkiwal; Vikas K Singh; Abirami Ramalingam; Himabindu Kudapa; Mahendar Thudi; Anu Chitikineni; Abhishek Rathore; Rajeev K Varshney
Journal:  Front Plant Sci       Date:  2016-05-02       Impact factor: 5.753

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