| Literature DB >> 26562302 |
Eleonora Zorzan1, Katia Hanssens2, Mery Giantin1, Mauro Dacasto1, Patrice Dubreuil2.
Abstract
INTRODUCTION: Both canine cutaneous mast cell tumor (MCT) and human systemic mastocytosis (SM) are characterized by abnormal proliferation and accumulation of mast cells in tissues and, frequently, by the presence of activating mutations in the receptor tyrosine kinase V-Kit Hardy-Zuckerman 4 Feline Sarcoma Viral Oncogene Homolog (c-KIT), albeit at different incidence (>80% in SM and 10-30% in MCT). In the last few years, it has been discovered that additional mutations in other genes belonging to the methylation system, the splicing machinery and cell signaling, contribute, with c-KIT, to SM pathogenesis and/or phenotype. In the present study, the mutational profile of the Tet methylcytosine dioxygenase 2 (TET2), the isocitrate dehydrogenases 1 and 2 (IDH1 and IDH2), the serine/arginine-rich splicing factor 2 (SRSF2), the splicing factor 3b subunit 1 (SF3B1), the Kirsten rat sarcoma viral oncogene homolog (KRAS) and the neuroblastoma RAS viral oncogene homolog (NRAS), commonly mutated in human myeloid malignancies and mastocytosis, was investigated in canine MCTs.Entities:
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Year: 2015 PMID: 26562302 PMCID: PMC4643045 DOI: 10.1371/journal.pone.0142450
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.752
Forward (F) and reverse (R) primer sequences of canine genes included in the present study and used for polymerase chain reaction with the corresponding annealing temperature and product length.
| GENE AND PRIMER SEQUENCES (5´-3´) | EXON | TEMP. ANNEALING | PRODUCT LENGHT |
|---|---|---|---|
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| F: | 1 | 60°C | 466 bp |
| R: | |||
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| F: | 2 | 70°C | 163 bp |
| R: | |||
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| F: | 4 | 67°C | 343 bp |
| R: | |||
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| F: | 1 | 65°C | 223 bp |
| R: | |||
| F: | 2 | 60°C | 367 bp |
| R: | |||
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| F: | 13 | 67°C | 1101 bp |
| R: | |||
| F: | 14 | 67°C | 855 bp |
| R: | |||
| F: | 15–16 | 67°C | 529 bp |
| R: | |||
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| F: | 3 | 60°C | 782 bp |
| R: | |||
| F: | 3 | 60°C | 718 bp |
| R: | |||
| F: | 3 | 60°C | 605 bp |
| R: | |||
| F: | 3 | 60°C | 702 bp |
| R: | |||
| F: | 3 | 60°C | 715 bp |
| R: | |||
| F: | 3 | 60°C | 760 bp |
| R: | |||
| F: | 3 | 60°C | 784 bp |
| R: | |||
| F: | 4 | 60°C | 371 bp |
| R: | |||
| F: | 5 | 60°C | 380 bp |
| R: | |||
| F: | 6 | 60°C | 421 bp |
| R: | |||
| F: | 7 | 60°C | 295 bp |
| R: | |||
| F: | 8 | 65°C | 336 bp |
| R: | |||
| F: | 9 | 60°C | 398 bp |
| R: | |||
| F: | 10 | 60°C | 638 bp |
| R: | |||
| F: | 11 | 65°C | 920 bp |
| R: | |||
| F: | 11 | 60°C | 853 bp |
| R: |
List of target genes and percentage of protein sequence identity between dog and other reference species (Homo sapiens, Felis catus, Mus musculus, Rattus norvegicus).
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|---|---|---|---|---|
| TET2 | 84% | 91% | 58% | 60% |
| IDH1 | 97% | 99% | 95% | 96% |
| IDH2 | 96% | 99% | 97% | 96% |
| NRAS | 100% | 100% | 100% | 100% |
| KRAS | 99% | 97% | 96% | 96% |
| SF3B1 | 100% | 100% | 100% | 100% |
| SRSF2 | 100% | NA | 100% | 100% |
NA: sequence not available in the databases.
List of genetic variations grouped for gene, relative population frequency and allelic frequencies in the MCT cohort of samples.
| Gene | Intron/Exon | Variation | Population Frequency | Allelic frequencies |
|---|---|---|---|---|
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| exon 3 | c.732G>A p. = | 3/75 (4%) | G: 0.98, A: 0.02 |
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| exon 3 | c. 2315G>A: p.Gly772Asp | 4/75 (5.3%) | G: 0.97, A: 0.03 |
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| intron 3 | c.3439+75del | 6/75 (8%) | T: 0.96, delT: 0.04 |
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| intron 8 | c.4075-38del | 5/75 (6.67%) | T: 0.97, delT: 0.03 |
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| intron 10 | c.4212+63_4212+65insCAG | 62/75 (82.7%) | WT: 0.31, insCAG: 0.69 |
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| intron 10 | c.4568-65C>T | 6/75 (8%) | C: 0.95, T: 0.05 |
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| exon 11 | c.4914T>C:p = | 58/75 (77.3%) | T: 0.41, C: 0.59 |
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| exon 11 | c.5213A>G: p.Asn1728Ser | 57/75 (76%) | G: 0.41, A: 0.59 |
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| exon 11 | c.5278G>A: p.Ala1760Thr | 1/75 (1.33%) | G: 0.01, A: 0.99 |
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| intron 2 | c. 292+37T>C | 3/75 (4%) | T: 0.98, C: 0.02 |
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| intron 2 | c. 290+44C>T | 18/75 (24%) | C: 0.87, T: 0.13 |
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| intron 1 | c. 93+104A>T | 8/75 (10.67%) | A: 0.95, T: 0.05 |
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| intron 1 | c. 93+139T>C | 8/75 (10.67%) | T: 0.95, C: 0.05 |
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| intron 1 | 362+59_362+62dup | 21/37 (58%) | WT: 0.64, Dup: 0.36 |
Fig 1Sequence alignment between dog, cat, human, mouse and rat specific glutamine-rich regions located in exon 3 and 11 of TET2 gene.
The image was obtained using the tool ClustalW2 (http://www.ebi.ac.uk/Tools/msa/clustalw2/).
List of genetic variations detected in the glutamine rich region of TET2 exon 11 with relative population frequency and total glutamine residues number in the 75 MCT samples.
| Variation | Population Frequency | Glutamine repetitions |
|---|---|---|
| Wild-type sequence | 59/75 | 12 |
| c. 4682insGCA; p. 1562insQ | 5/75 | 13 |
| c.4686_4697del; p. 1564_1567del | 4/75 | 8 |
| c.4686_4694del; p. 1564_1566del | 3/75 | 9 |
| c.4698_4700del; p.1568del | 4/75 | 11 |
Fig 2Association between the number of glutamine (Gln) repetitions and healthy/pathologic state in 114 canine blood and MCT samples.
Pearson χ2 test (p = 0.3454; not significant).