Literature DB >> 26559655

Emerging methodologies for pathogen identification in positive blood culture testing.

Grégory Dubourg1,2, Didier Raoult1,2.   

Abstract

Bloodstream infections (BSIs) represent a major cause of death in developed countries and are associated with long-term loss of functions. Blood culture remains the gold standard for BSI diagnosis, as it is easy to perform and displays a good analytical sensitivity. However, its major drawback remains the long turnaround time, which can result in inappropriate therapy, fall of survival rate, emergence of antibiotic resistance and increase of medical costs. Over the last 10 years, molecular tools have been the alternative to blood cultures, allowing early identification of pathogens involved in sepsis, as well detection of critical antibiotic resistance genes. Besides, the advent of MALDI-TOF revolutionized practice in routine microbiology significantly reduced the time to result. Reviewed here are recent improvements in early BSI diagnosis and these authors' view for the future is presented, including innovative high-throughput technologies.

Entities:  

Keywords:  Blood culture; MALDI-TOF MS; NGS; PCR ESI-MS; bloodstream infections; multiplex PCR; next-generation sequencing

Mesh:

Year:  2015        PMID: 26559655     DOI: 10.1586/14737159.2016.1112274

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  15 in total

1.  In vitro blood culture bottle inoculation of whole blood with clinically relevant antibiotic concentrations: a word of caution.

Authors:  M Grupper; J L Kuti; D P Nicolau
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2016-12-28       Impact factor: 3.267

Review 2.  Consolidation of Clinical Microbiology Laboratories and Introduction of Transformative Technologies.

Authors:  Zisis Kozlakidis; Alex van Belkum; Olivier Vandenberg; Géraldine Durand; Marie Hallin; Andreas Diefenbach; Vanya Gant; Patrick Murray
Journal:  Clin Microbiol Rev       Date:  2020-02-26       Impact factor: 26.132

3.  Emerging Microtechnologies and Automated Systems for Rapid Bacterial Identification and Antibiotic Susceptibility Testing.

Authors:  Yiyan Li; Xing Yang; Weian Zhao
Journal:  SLAS Technol       Date:  2017-08-29       Impact factor: 3.047

4.  Effects of Clinically Meaningful Concentrations of Antipseudomonal β-Lactams on Time to Detection and Organism Growth in Blood Culture Bottles.

Authors:  Mordechai Grupper; David P Nicolau; Jaber Aslanzadeh; Linda K Tanner; Joseph L Kuti
Journal:  J Clin Microbiol       Date:  2017-10-11       Impact factor: 5.948

Review 5.  Diagnosis of Bloodstream Infections: An Evolution of Technologies towards Accurate and Rapid Identification and Antibiotic Susceptibility Testing.

Authors:  Kristel C Tjandra; Nikhil Ram-Mohan; Ryuichiro Abe; Marjan M Hashemi; Jyong-Huei Lee; Siew Mei Chin; Manuel A Roshardt; Joseph C Liao; Pak Kin Wong; Samuel Yang
Journal:  Antibiotics (Basel)       Date:  2022-04-12

6.  Rapid Classification and Identification of Multiple Microorganisms with Accurate Statistical Significance via High-Resolution Tandem Mass Spectrometry.

Authors:  Gelio Alves; Guanghui Wang; Aleksey Y Ogurtsov; Steven K Drake; Marjan Gucek; David B Sacks; Yi-Kuo Yu
Journal:  J Am Soc Mass Spectrom       Date:  2018-06-05       Impact factor: 3.109

7.  Scanning Electron Microscope: A New Potential Tool to Replace Gram Staining for Microbe Identification in Blood Cultures.

Authors:  Gabriel Haddad; Sara Bellali; Tatsuki Takakura; Anthony Fontanini; Yusuke Ominami; Jacques Bou Khalil; Didier Raoult
Journal:  Microorganisms       Date:  2021-05-28

Review 8.  New Microbiological Techniques for the Diagnosis of Bacterial Infections and Sepsis in ICU Including Point of Care.

Authors:  Anna Maria Peri; Adam Stewart; Anna Hume; Adam Irwin; Patrick N A Harris
Journal:  Curr Infect Dis Rep       Date:  2021-06-16       Impact factor: 3.725

9.  DNA extraction from primary liquid blood cultures for bloodstream infection diagnosis using whole genome sequencing.

Authors:  Luke W Anson; Kevin Chau; Nicholas Sanderson; Sarah Hoosdally; Phelim Bradley; Zamin Iqbal; Hang Phan; Dona Foster; Sarah Oakley; Marcus Morgan; Tim E A Peto; Derrick W Crook; Louise J Pankhurst
Journal:  J Med Microbiol       Date:  2018-01-10       Impact factor: 2.472

10.  An Automated Sample Preparation Instrument to Accelerate Positive Blood Cultures Microbial Identification by MALDI-TOF Mass Spectrometry (Vitek®MS).

Authors:  Patrick Broyer; Nadine Perrot; Hervé Rostaing; Jérome Blaze; Frederic Pinston; Gaspard Gervasi; Marie-Hélène Charles; Fabien Dachaud; Jacques Dachaud; Frederic Moulin; Sylvain Cordier; Olivier Dauwalder; Hélène Meugnier; Francois Vandenesch
Journal:  Front Microbiol       Date:  2018-05-15       Impact factor: 5.640

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