Literature DB >> 26555177

Using Nested Contractions and a Hierarchical Tensor Format To Compute Vibrational Spectra of Molecules with Seven Atoms.

Phillip S Thomas1, Tucker Carrington1.   

Abstract

We propose a method for solving the vibrational Schrödinger equation with which one can compute hundreds of energy levels of seven-atom molecules using at most a few gigabytes of memory. It uses nested contractions in conjunction with the reduced-rank block power method (RRBPM) described in J. Chem. Phys. 2014, 140, 174111. Successive basis contractions are organized into a tree, the nodes of which are associated with eigenfunctions of reduced-dimension Hamiltonians. The RRBPM is used recursively to compute eigenfunctions of nodes in bases of products of reduced-dimension eigenfunctions of nodes with fewer coordinates. The corresponding vectors are tensors in what is called CP-format. The final wave functions are therefore represented in a hierarchical CP-format. Computational efficiency and accuracy are significantly improved by representing the Hamiltonian in the same hierarchical format as the wave function. We demonstrate that with this hierarchical RRBPM it is possible to compute energy levels of a 64-D coupled-oscillator model Hamiltonian and also of acetonitrile (CH3CN) and ethylene oxide (C2H4O), for which we use quartic potentials. The most accurate acetonitrile calculation uses 139 MB of memory and takes 3.2 h on a single processor. The most accurate ethylene oxide calculation uses 6.1 GB of memory and takes 14 d on 63 processors. The hierarchical RRBPM shatters the memory barrier that impedes the calculation of vibrational spectra.

Entities:  

Year:  2015        PMID: 26555177     DOI: 10.1021/acs.jpca.5b10015

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  5 in total

1.  A-VCI: A flexible method to efficiently compute vibrational spectra.

Authors:  Marc Odunlami; Vincent Le Bris; Didier Bégué; Isabelle Baraille; Olivier Coulaud
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

2.  Systematically expanding nondirect product bases within the pruned multi-configuration time-dependent Hartree (MCTDH) method: A comparison with multi-layer MCTDH.

Authors:  Robert Wodraszka; Tucker Carrington
Journal:  J Chem Phys       Date:  2017-05-21       Impact factor: 3.488

3.  An intertwined method for making low-rank, sum-of-product basis functions that makes it possible to compute vibrational spectra of molecules with more than 10 atoms.

Authors:  Phillip S Thomas; Tucker Carrington
Journal:  J Chem Phys       Date:  2017-05-28       Impact factor: 3.488

4.  Anharmonic vibrational spectroscopy of polycyclic aromatic hydrocarbons (PAHs).

Authors:  Giacomo Mulas; Cyril Falvo; Patrick Cassam-Chenaï; Christine Joblin
Journal:  J Chem Phys       Date:  2018-10-14       Impact factor: 3.488

5.  Machine learning molecular dynamics for the simulation of infrared spectra.

Authors:  Michael Gastegger; Jörg Behler; Philipp Marquetand
Journal:  Chem Sci       Date:  2017-08-10       Impact factor: 9.825

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.