Literature DB >> 26552817

Preparation of SELEX Samples for Next-Generation Sequencing.

Fabian Tolle1, Günter Mayer2.   

Abstract

Fuelled by massive whole genome sequencing projects such as the human genome project, enormous technological advancements and therefore tremendous price drops could be achieved, rendering next-generation sequencing very attractive for deep sequencing of SELEX libraries. Herein we describe the preparation of SELEX samples for Illumina sequencing, based on the already established whole genome sequencing workflow. We describe the addition of barcode sequences for multiplexing and the adapter ligation, avoiding associated pitfalls.

Entities:  

Keywords:  Aptamer; High-throughput sequencing; Illumina dye sequencing; Next-generation sequencing; SELEX

Mesh:

Substances:

Year:  2016        PMID: 26552817     DOI: 10.1007/978-1-4939-3197-2_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  Identification and characterization of nucleobase-modified aptamers by click-SELEX.

Authors:  Franziska Pfeiffer; Fabian Tolle; Malte Rosenthal; Gerhard Markus Brändle; Jörg Ewers; Günter Mayer
Journal:  Nat Protoc       Date:  2018-04-26       Impact factor: 13.491

Review 2.  Applications of High-Throughput Sequencing for In Vitro Selection and Characterization of Aptamers.

Authors:  Nam Nguyen Quang; Gérald Perret; Frédéric Ducongé
Journal:  Pharmaceuticals (Basel)       Date:  2016-12-10

3.  Systematic evaluation of error rates and causes in short samples in next-generation sequencing.

Authors:  Franziska Pfeiffer; Carsten Gröber; Michael Blank; Kristian Händler; Marc Beyer; Joachim L Schultze; Günter Mayer
Journal:  Sci Rep       Date:  2018-07-19       Impact factor: 4.379

4.  Robotic assisted generation of 2'-deoxy-2'-fluoro-modifed RNA aptamers - High performance enabling strategies in aptamer selection.

Authors:  Stefan Breuers; Laura Lledo Bryant; Tjasa Legen; Günter Mayer
Journal:  Methods       Date:  2019-05-30       Impact factor: 3.608

5.  A blue light receptor that mediates RNA binding and translational regulation.

Authors:  Anna M Weber; Jennifer Kaiser; Thea Ziegler; Sebastian Pilsl; Christian Renzl; Lisa Sixt; Georg Pietruschka; Sébastien Moniot; Ankana Kakoti; Marc Juraschitz; Stefanie Schrottke; Laura Lledo Bryant; Clemens Steegborn; Robert Bittl; Günter Mayer; Andreas Möglich
Journal:  Nat Chem Biol       Date:  2019-08-26       Impact factor: 15.040

Review 6.  Implementation of High-Throughput Sequencing (HTS) in Aptamer Selection Technology.

Authors:  Natalia Komarova; Daria Barkova; Alexander Kuznetsov
Journal:  Int J Mol Sci       Date:  2020-11-20       Impact factor: 5.923

7.  Functional and Structural Characterization of Nucleic Acid Ligands That Bind to Activated Coagulation Factor XIII.

Authors:  Nasim Shahidi Hamedani; Arijit Biswas; Oliver Rudan; Rosa Tönges; Carlotta Meyring; Fabian Tolle; Günter Mayer; Johannes Oldenburg; Jens Müller; Bernd Pötzsch
Journal:  J Clin Med       Date:  2021-02-10       Impact factor: 4.241

8.  Enhancing the throughput and multiplexing capabilities of next generation sequencing for efficient implementation of pooled shRNA and CRISPR screens.

Authors:  Md Fahmid Islam; Atsushi Watanabe; Lai Wong; Conor Lazarou; Frederick S Vizeacoumar; Omar Abuhussein; Wayne Hill; Maruti Uppalapati; C Ronald Geyer; Franco J Vizeacoumar
Journal:  Sci Rep       Date:  2017-04-21       Impact factor: 4.379

9.  The Diversity of a Polyclonal FluCell-SELEX Library Outperforms Individual Aptamers as Emerging Diagnostic Tools for the Identification of Carbapenem Resistant Pseudomonas aeruginosa.

Authors:  Dennis Kubiczek; Heinz Raber; Nicholas Bodenberger; Thomas Oswald; Melis Sahan; Daniel Mayer; Sebastian Wiese; Steffen Stenger; Tanja Weil; Frank Rosenau
Journal:  Chemistry       Date:  2020-10-15       Impact factor: 5.236

  9 in total

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